Wall clock time and date at job start Wed Apr 1 2020 04:09:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 109.46638 * 2 1 4 4 H 1.09001 * 109.48351 * 57.60944 * 3 2 1 5 5 C 1.53044 * 109.51077 * 297.55282 * 3 2 1 6 6 N 1.46948 * 109.36799 * 181.61961 * 5 3 2 7 7 C 1.46904 * 111.00466 * 183.18303 * 6 5 3 8 8 C 1.46963 * 110.87938 * 59.31839 * 6 5 3 9 9 C 1.53045 * 109.36402 * 300.67962 * 8 6 5 10 10 N 1.46951 * 109.48620 * 177.64667 * 3 2 1 11 11 C 1.46902 * 111.00336 * 303.17910 * 10 3 2 12 12 C 1.50704 * 109.47091 * 163.45478 * 11 10 3 13 13 O 1.21282 * 119.99894 * 359.95576 * 12 11 10 14 14 N 1.34776 * 119.99673 * 179.97438 * 12 11 10 15 15 C 1.46498 * 120.00318 * 355.35179 * 14 12 11 16 16 C 1.50695 * 109.47269 * 89.99785 * 15 14 12 17 17 H 1.08003 * 120.00418 * 0.02562 * 16 15 14 18 18 C 1.37883 * 120.00358 * 180.02562 * 16 15 14 19 19 N 1.31511 * 120.00552 * 180.02562 * 18 16 15 20 20 Si 1.86797 * 119.99584 * 359.97438 * 18 16 15 21 21 H 1.48498 * 109.47200 * 90.00102 * 20 18 16 22 22 H 1.48499 * 109.47081 * 210.00499 * 20 18 16 23 23 H 1.48500 * 109.47365 * 330.00173 * 20 18 16 24 24 C 1.39926 * 119.99714 * 175.34859 * 14 12 11 25 25 C 1.38871 * 120.07148 * 300.87026 * 24 14 12 26 26 C 1.38114 * 119.92687 * 179.74605 * 25 24 14 27 27 C 1.38285 * 120.07209 * 0.53057 * 26 25 24 28 28 C 1.38288 * 120.13858 * 359.74520 * 27 26 25 29 29 C 1.38115 * 120.07037 * 359.97438 * 28 27 26 30 30 H 1.08995 * 109.47496 * 305.52678 * 1 2 3 31 31 H 1.08995 * 109.47505 * 65.53510 * 1 2 3 32 32 H 1.09009 * 109.46474 * 185.52992 * 1 2 3 33 33 H 1.09003 * 109.47194 * 240.00888 * 2 1 3 34 34 H 1.08997 * 109.47205 * 119.99990 * 2 1 3 35 35 H 1.09003 * 109.48933 * 301.58810 * 5 3 2 36 36 H 1.09004 * 109.49380 * 61.64814 * 5 3 2 37 37 H 1.08992 * 109.47095 * 300.15772 * 7 6 5 38 38 H 1.09000 * 109.46475 * 60.15684 * 7 6 5 39 39 H 1.09000 * 109.47427 * 180.15265 * 7 6 5 40 40 H 1.09002 * 109.48727 * 180.71096 * 8 6 5 41 41 H 1.09000 * 109.50591 * 60.66204 * 8 6 5 42 42 H 1.09003 * 109.49292 * 298.43310 * 9 8 6 43 43 H 1.09001 * 109.51125 * 178.37856 * 9 8 6 44 44 H 1.09004 * 109.46941 * 283.45689 * 11 10 3 45 45 H 1.08994 * 109.46904 * 43.45730 * 11 10 3 46 46 H 1.09002 * 109.47167 * 209.99784 * 15 14 12 47 47 H 1.09005 * 109.47116 * 329.99968 * 15 14 12 48 48 H 0.96991 * 120.00304 * 180.02562 * 19 18 16 49 49 H 1.07993 * 120.03615 * 0.02562 * 25 24 14 50 50 H 1.07997 * 119.96375 * 180.27122 * 26 25 24 51 51 H 1.07994 * 119.93172 * 179.76169 * 27 26 25 52 52 H 1.08001 * 119.96414 * 179.97438 * 28 27 26 53 53 H 1.08002 * 120.03205 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6421 1.9688 0.8677 5 6 1.5811 2.1469 -1.2790 6 7 2.1049 3.5198 -1.2940 7 6 1.6233 4.2542 -2.4715 8 6 3.5735 3.5207 -1.2371 9 6 4.0322 2.8165 0.0419 10 7 3.5083 1.4435 0.0569 11 6 3.9901 0.7091 1.2344 12 6 5.4498 0.3786 1.0578 13 8 6.0313 0.7205 0.0498 14 7 6.1089 -0.2972 2.0198 15 6 5.4354 -0.6214 3.2797 16 6 4.7562 -1.9609 3.1560 17 1 4.8201 -2.5155 2.2315 18 6 4.0530 -2.4786 4.2232 19 7 3.4606 -3.6478 4.1154 20 14 3.9431 -1.5197 5.8225 21 1 2.7520 -0.6335 5.7874 22 1 3.8222 -2.4666 6.9600 23 1 5.1675 -0.6968 5.9915 24 6 7.4364 -0.6891 1.8150 25 6 7.7607 -1.5185 0.7495 26 6 9.0727 -1.8993 0.5471 27 6 10.0615 -1.4644 1.4105 28 6 9.7410 -0.6430 2.4759 29 6 8.4316 -0.2540 2.6803 30 1 -0.3634 0.5971 0.8363 31 1 -0.3634 0.4256 -0.9353 32 1 -0.3632 -1.0230 0.0990 33 1 1.8934 -0.5137 -0.8901 34 1 1.8934 -0.5138 0.8900 35 1 1.9563 1.6050 -2.1471 36 1 0.4918 2.1729 -1.3091 37 1 1.9500 3.7432 -3.3771 38 1 0.5344 4.2983 -2.4518 39 1 2.0281 5.2662 -2.4592 40 1 3.9367 4.5484 -1.2368 41 1 3.9716 2.9947 -2.1048 42 1 3.6570 3.3584 0.9101 43 1 5.1215 2.7904 0.0724 44 1 3.8621 1.3253 2.1244 45 1 3.4197 -0.2130 1.3458 46 1 6.1693 -0.6592 4.0848 47 1 4.6917 0.1440 3.5016 48 1 2.9657 -4.0117 4.8660 49 1 6.9883 -1.8618 0.0772 50 1 9.3262 -2.5408 -0.2839 51 1 11.0862 -1.7667 1.2524 52 1 10.5154 -0.3054 3.1487 53 1 8.1821 0.3878 3.5123 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000564880828.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:09:35 Heat of formation + Delta-G solvation = -0.377437 kcal Electronic energy + Delta-G solvation = -31898.768265 eV Core-core repulsion = 27963.049691 eV Total energy + Delta-G solvation = -3935.718574 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.66863 -40.53199 -39.19824 -36.82144 -36.62903 -34.82298 -34.57663 -31.85598 -31.71778 -30.66135 -29.96613 -29.30852 -27.08112 -25.60382 -24.73625 -24.41412 -23.42042 -23.02628 -22.04675 -20.74703 -20.27207 -19.12425 -18.52056 -17.87992 -17.23066 -16.88781 -16.75667 -16.50276 -16.30681 -15.93485 -15.67136 -15.55988 -15.17036 -15.04863 -14.84641 -14.62024 -14.56635 -14.32168 -14.16041 -13.97334 -13.79818 -13.49660 -13.44361 -13.15072 -12.95104 -12.78776 -12.65522 -12.57827 -12.52023 -12.43253 -12.22343 -12.16368 -11.98808 -11.89964 -11.74192 -11.65452 -11.23704 -10.86095 -10.77753 -10.29200 -9.84051 -9.44712 -9.28515 -9.09437 -8.31875 -6.40137 0.38855 0.49807 1.36996 1.39051 1.47969 1.62997 2.01352 2.31539 2.81635 2.90410 2.93388 3.01619 3.66288 3.70947 3.88317 4.00804 4.06711 4.09208 4.14299 4.19660 4.26243 4.27012 4.31809 4.40222 4.45242 4.48338 4.57402 4.58540 4.61245 4.63381 4.70087 4.70180 4.74873 4.82433 4.83310 4.86441 4.93625 4.99899 5.01569 5.11190 5.20407 5.25235 5.35879 5.36817 5.45361 5.53338 5.59454 5.73156 5.82637 5.92125 6.08460 6.12811 6.15787 6.21338 6.48497 6.64295 7.19616 7.29264 8.84193 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.008479 B = 0.004296 C = 0.003192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3301.297689 B = 6516.394077 C = 8769.182253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.123 4.123 3 C 0.092 3.908 4 H 0.050 0.950 5 C 0.070 3.930 6 N -0.553 5.553 7 C 0.026 3.974 8 C 0.067 3.933 9 C 0.061 3.939 10 N -0.532 5.532 11 C 0.045 3.955 12 C 0.521 3.479 13 O -0.556 6.556 14 N -0.560 5.560 15 C 0.219 3.781 16 C -0.540 4.540 17 H 0.028 0.972 18 C 0.026 3.974 19 N -0.937 5.937 20 Si 0.935 3.065 21 H -0.258 1.258 22 H -0.283 1.283 23 H -0.241 1.241 24 C 0.139 3.861 25 C -0.137 4.137 26 C -0.113 4.113 27 C -0.129 4.129 28 C -0.104 4.104 29 C -0.145 4.145 30 H 0.060 0.940 31 H 0.072 0.928 32 H 0.055 0.945 33 H 0.057 0.943 34 H 0.051 0.949 35 H 0.031 0.969 36 H 0.102 0.898 37 H 0.024 0.976 38 H 0.081 0.919 39 H 0.079 0.921 40 H 0.096 0.904 41 H 0.028 0.972 42 H 0.041 0.959 43 H 0.069 0.931 44 H 0.072 0.928 45 H 0.110 0.890 46 H 0.045 0.955 47 H 0.050 0.950 48 H 0.269 0.731 49 H 0.090 0.910 50 H 0.142 0.858 51 H 0.159 0.841 52 H 0.159 0.841 53 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.047 13.607 -6.172 14.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.161 4.161 3 C -0.016 4.016 4 H 0.068 0.932 5 C -0.058 4.058 6 N -0.278 5.278 7 C -0.121 4.121 8 C -0.061 4.061 9 C -0.067 4.067 10 N -0.257 5.257 11 C -0.085 4.085 12 C 0.311 3.689 13 O -0.434 6.434 14 N -0.287 5.287 15 C 0.098 3.902 16 C -0.578 4.578 17 H 0.046 0.954 18 C -0.173 4.173 19 N -0.576 5.576 20 Si 0.757 3.243 21 H -0.182 1.182 22 H -0.209 1.209 23 H -0.164 1.164 24 C 0.048 3.952 25 C -0.156 4.156 26 C -0.131 4.131 27 C -0.146 4.146 28 C -0.122 4.122 29 C -0.165 4.165 30 H 0.080 0.920 31 H 0.091 0.909 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.069 0.931 35 H 0.049 0.951 36 H 0.120 0.880 37 H 0.042 0.958 38 H 0.100 0.900 39 H 0.098 0.902 40 H 0.114 0.886 41 H 0.046 0.954 42 H 0.059 0.941 43 H 0.088 0.912 44 H 0.089 0.911 45 H 0.127 0.873 46 H 0.063 0.937 47 H 0.068 0.932 48 H 0.078 0.922 49 H 0.108 0.892 50 H 0.160 0.840 51 H 0.177 0.823 52 H 0.177 0.823 53 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 1.190 13.698 -6.616 15.258 hybrid contribution -0.387 -0.672 0.680 1.031 sum 0.803 13.026 -5.936 14.337 Atomic orbital electron populations 1.21720 0.93207 1.02218 1.02738 1.21650 0.97621 0.95090 1.01778 1.21741 0.85572 0.96061 0.98186 0.93246 1.22193 1.00542 0.87577 0.95469 1.62218 1.08648 1.15022 1.41866 1.22404 1.01691 0.98516 0.89525 1.22063 0.87652 1.00403 0.95975 1.22175 0.99742 0.87010 0.97784 1.61749 1.09337 1.15344 1.39311 1.21960 0.92257 1.01279 0.93051 1.20852 0.89348 0.76856 0.81886 1.90588 1.69557 1.54233 1.29069 1.45669 1.10649 1.54091 1.18327 1.19756 0.93201 0.95458 0.81740 1.21356 1.33000 1.03614 0.99876 0.95372 1.25705 0.93964 0.95550 1.02130 1.70036 1.34656 1.19510 1.33366 0.85903 0.80657 0.79212 0.78523 1.18215 1.20896 1.16420 1.17972 0.84235 0.96146 0.96864 1.21171 0.97822 0.98003 0.98653 1.21280 0.91494 0.99943 1.00422 1.21502 1.00372 0.98135 0.94637 1.21374 0.95259 0.97343 0.98260 1.21349 0.93129 1.01610 1.00414 0.92050 0.90887 0.92564 0.92378 0.93073 0.95118 0.88004 0.95779 0.89996 0.90240 0.88574 0.95386 0.94078 0.91216 0.91075 0.87272 0.93674 0.93243 0.92158 0.89205 0.83983 0.82313 0.82297 0.85218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.22 9.46 71.98 0.68 -2.54 16 2 C -0.12 -3.64 5.24 30.60 0.16 -3.48 16 3 C 0.09 2.65 2.06 44.92 0.09 2.74 16 4 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 5 C 0.07 1.70 4.56 86.31 0.39 2.10 16 6 N -0.55 -12.82 4.97 -921.96 -4.58 -17.40 16 7 C 0.03 0.45 9.60 127.69 1.23 1.68 16 8 C 0.07 1.73 5.62 86.31 0.49 2.21 16 9 C 0.06 1.86 5.27 86.31 0.45 2.31 16 10 N -0.53 -18.04 4.14 -875.02 -3.62 -21.67 16 11 C 0.04 1.70 3.97 85.56 0.34 2.04 16 12 C 0.52 22.41 7.19 87.66 0.63 23.04 16 13 O -0.56 -25.87 14.34 -3.04 -0.04 -25.91 16 14 N -0.56 -24.40 2.55 -635.31 -1.62 -26.02 16 15 C 0.22 9.75 3.92 85.63 0.34 10.08 16 16 C -0.54 -29.16 9.72 25.60 0.25 -28.91 16 17 H 0.03 1.77 8.06 -2.91 -0.02 1.75 16 18 C 0.03 1.41 5.47 84.66 0.46 1.87 16 19 N -0.94 -55.26 13.96 21.45 0.30 -54.96 16 20 Si 0.93 39.58 27.47 68.60 1.88 41.46 16 21 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16 22 H -0.28 -12.05 7.11 99.48 0.71 -11.35 16 23 H -0.24 -9.24 6.54 99.48 0.65 -8.59 16 24 C 0.14 5.75 5.08 38.15 0.19 5.95 16 25 C -0.14 -5.56 9.07 22.39 0.20 -5.36 16 26 C -0.11 -3.58 10.04 22.25 0.22 -3.35 16 27 C -0.13 -3.36 10.04 22.29 0.22 -3.13 16 28 C -0.10 -2.81 10.04 22.25 0.22 -2.59 16 29 C -0.15 -4.97 9.35 22.39 0.21 -4.77 16 30 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.07 1.36 6.82 -2.39 -0.02 1.34 16 32 H 0.06 1.30 8.14 -2.38 -0.02 1.28 16 33 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 34 H 0.05 1.79 5.91 -2.39 -0.01 1.78 16 35 H 0.03 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.10 2.01 6.71 -2.39 -0.02 2.00 16 37 H 0.02 0.42 8.14 -2.39 -0.02 0.40 16 38 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.08 1.16 8.13 -2.39 -0.02 1.14 16 40 H 0.10 2.05 8.13 -2.39 -0.02 2.03 16 41 H 0.03 0.81 8.14 -2.39 -0.02 0.79 16 42 H 0.04 1.19 8.14 -2.39 -0.02 1.18 16 43 H 0.07 2.41 6.45 -2.39 -0.02 2.40 16 44 H 0.07 2.48 7.16 -2.38 -0.02 2.47 16 45 H 0.11 4.55 5.21 -2.39 -0.01 4.54 16 46 H 0.05 1.95 6.55 -2.39 -0.02 1.93 16 47 H 0.05 2.02 5.90 -2.38 -0.01 2.01 16 48 H 0.27 14.82 8.31 -92.72 -0.77 14.05 16 49 H 0.09 4.05 8.06 -2.91 -0.02 4.03 16 50 H 0.14 3.69 8.06 -2.91 -0.02 3.66 16 51 H 0.16 2.83 8.06 -2.91 -0.02 2.81 16 52 H 0.16 3.01 8.06 -2.91 -0.02 2.99 16 53 H 0.13 4.04 7.94 -2.91 -0.02 4.02 16 Total: -1.00 -69.03 410.66 -0.07 -69.11 By element: Atomic # 1 Polarization: 34.69 SS G_CDS: 0.82 Total: 35.50 kcal Atomic # 6 Polarization: -6.90 SS G_CDS: 6.79 Total: -0.11 kcal Atomic # 7 Polarization: -110.53 SS G_CDS: -9.52 Total: -120.05 kcal Atomic # 8 Polarization: -25.87 SS G_CDS: -0.04 Total: -25.91 kcal Atomic # 14 Polarization: 39.58 SS G_CDS: 1.88 Total: 41.46 kcal Total: -69.03 -0.07 -69.11 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000564880828.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.728 kcal (2) G-P(sol) polarization free energy of solvation -69.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds