Wall clock time and date at job start Wed Apr 1 2020 04:13:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.46725 * 2 1 4 4 H 1.09005 * 109.46748 * 183.88091 * 3 2 1 5 5 C 1.50694 * 109.47340 * 303.87846 * 3 2 1 6 6 H 1.08000 * 119.99803 * 115.40209 * 5 3 2 7 7 C 1.37877 * 120.00189 * 295.40750 * 5 3 2 8 8 N 1.31518 * 120.00060 * 354.12777 * 7 5 3 9 9 Si 1.86806 * 120.00212 * 174.12968 * 7 5 3 10 10 H 1.48496 * 109.47255 * 179.97438 * 9 7 5 11 11 H 1.48497 * 109.47115 * 300.00071 * 9 7 5 12 12 H 1.48505 * 109.46905 * 59.99824 * 9 7 5 13 13 N 1.46899 * 109.47183 * 63.88075 * 3 2 1 14 14 C 1.46905 * 110.99666 * 80.81644 * 13 3 2 15 15 C 1.50705 * 109.46913 * 184.69027 * 14 13 3 16 16 O 1.21281 * 119.99715 * 0.02562 * 15 14 13 17 17 N 1.34772 * 119.99972 * 179.97438 * 15 14 13 18 18 C 1.47079 * 120.88303 * 359.73043 * 17 15 14 19 19 C 1.53699 * 108.27747 * 128.75055 * 18 17 15 20 20 N 1.46893 * 109.25815 * 54.08078 * 19 18 17 21 21 C 1.39679 * 111.00177 * 172.60557 * 20 19 18 22 22 C 1.38933 * 120.07199 * 124.29922 * 21 20 19 23 23 C 1.38085 * 119.92267 * 179.97438 * 22 21 20 24 24 C 1.38309 * 120.07201 * 359.97438 * 23 22 21 25 25 C 1.38256 * 120.15311 * 0.02562 * 24 23 22 26 26 C 1.50701 * 119.96605 * 180.02562 * 25 24 23 27 27 C 1.38127 * 120.07462 * 359.74791 * 25 24 23 28 28 C 1.46899 * 111.27002 * 296.75847 * 20 19 18 29 29 C 1.47083 * 120.87982 * 179.97438 * 17 15 14 30 30 H 1.09004 * 109.46778 * 64.86826 * 1 2 3 31 31 H 1.09000 * 109.47135 * 184.86349 * 1 2 3 32 32 H 1.08994 * 109.47538 * 304.86719 * 1 2 3 33 33 H 1.08996 * 109.47206 * 240.00009 * 2 1 3 34 34 H 1.09002 * 109.47150 * 119.99639 * 2 1 3 35 35 H 0.97000 * 119.99813 * 354.18112 * 8 7 5 36 36 H 1.00894 * 111.00124 * 316.86756 * 13 3 2 37 37 H 1.08995 * 109.47546 * 304.68963 * 14 13 3 38 38 H 1.09001 * 109.47386 * 64.69406 * 14 13 3 39 39 H 1.09002 * 109.62722 * 248.51643 * 18 17 15 40 40 H 1.09004 * 109.62745 * 9.09905 * 18 17 15 41 41 H 1.09005 * 109.64430 * 294.07814 * 19 18 17 42 42 H 1.09004 * 109.42253 * 173.95018 * 19 18 17 43 43 H 1.07992 * 120.03821 * 0.02562 * 22 21 20 44 44 H 1.07994 * 119.96349 * 180.02562 * 23 22 21 45 45 H 1.08003 * 119.92192 * 179.97438 * 24 23 22 46 46 H 1.09000 * 109.47421 * 89.99346 * 26 25 24 47 47 H 1.08993 * 109.47118 * 210.00287 * 26 25 24 48 48 H 1.09004 * 109.46425 * 330.00269 * 26 25 24 49 49 H 1.08006 * 120.04172 * 180.27354 * 27 25 24 50 50 H 1.08997 * 109.49197 * 303.14160 * 28 20 19 51 51 H 1.09003 * 109.51441 * 183.07663 * 28 20 19 52 52 H 1.08993 * 109.62981 * 350.91082 * 29 17 15 53 53 H 1.09007 * 109.62300 * 111.48720 * 29 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 3.1277 1.4433 -0.0696 5 6 1.4606 2.1801 -1.1795 6 1 0.7881 3.0100 -1.0202 7 6 1.7891 1.7955 -2.4622 8 7 2.6952 0.8624 -2.6572 9 14 0.9473 2.5997 -3.9230 10 1 1.4741 2.0143 -5.1819 11 1 -0.5167 2.3645 -3.8418 12 1 1.2156 4.0602 -3.9066 13 7 1.6282 2.1074 1.2435 14 6 2.5278 1.7567 2.3507 15 6 2.0099 2.3623 3.6299 16 8 0.9915 3.0207 3.6201 17 7 2.6779 2.1712 4.7847 18 6 3.9110 1.3703 4.8199 19 6 4.9990 2.1915 5.5301 20 7 4.5011 2.6223 6.8433 21 6 5.5150 3.2281 7.5889 22 6 5.3396 4.5130 8.0876 23 6 6.3438 5.1087 8.8248 24 6 7.5228 4.4276 9.0674 25 6 7.7006 3.1489 8.5726 26 6 8.9868 2.4104 8.8400 27 6 6.6984 2.5453 7.8384 28 6 3.3425 3.5150 6.7072 29 6 2.1902 2.7537 6.0441 30 1 -0.3633 0.4365 -0.9304 31 1 -0.3633 -1.0240 0.0871 32 1 -0.3634 0.5874 0.8431 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 3.1927 0.5048 -1.9052 36 1 0.6706 1.8864 1.4719 37 1 2.5717 0.6725 2.4537 38 1 3.5260 2.1427 2.1441 39 1 3.7310 0.4448 5.3669 40 1 4.2285 1.1419 3.8025 41 1 5.2475 3.0670 4.9302 42 1 5.8890 1.5763 5.6625 43 1 4.4187 5.0448 7.8996 44 1 6.2080 6.1073 9.2131 45 1 8.3068 4.8960 9.6440 46 1 8.8943 1.8431 9.7661 47 1 9.1924 1.7284 8.0150 48 1 9.8040 3.1258 8.9323 49 1 6.8361 1.5446 7.4559 50 1 3.6141 4.3721 6.0910 51 1 3.0309 3.8601 7.6931 52 1 1.3694 3.4401 5.8365 53 1 1.8478 1.9588 6.7067 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000577505743.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:13:16 Heat of formation + Delta-G solvation = -13.967175 kcal Electronic energy + Delta-G solvation = -30334.455907 eV Core-core repulsion = 26398.148038 eV Total energy + Delta-G solvation = -3936.307869 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.73392 -40.66075 -38.84288 -38.20662 -35.92879 -34.65137 -33.45911 -32.83254 -32.16709 -31.11670 -29.11807 -27.92297 -27.60453 -26.27771 -25.46205 -24.85183 -23.20615 -22.62481 -21.61362 -21.26153 -20.06835 -19.09863 -18.36057 -17.62297 -17.44912 -16.87454 -16.77706 -16.37335 -16.23121 -15.81013 -15.75791 -15.46430 -15.35835 -15.11787 -14.84918 -14.65252 -14.61169 -14.33163 -14.14286 -13.88164 -13.64745 -13.45366 -13.26360 -13.10509 -13.00610 -12.87207 -12.67029 -12.62493 -12.57936 -12.41661 -12.12723 -12.11253 -11.95646 -11.90856 -11.80440 -11.69033 -10.97850 -10.80459 -10.58914 -10.38699 -9.80564 -9.64350 -9.09365 -8.84471 -8.49838 -6.19314 0.40893 0.46451 1.49223 1.56241 1.62319 1.77266 1.82092 2.53496 2.60402 2.88875 3.25378 3.34526 3.57694 3.71324 3.78703 3.82624 3.98722 4.07132 4.15699 4.18549 4.20878 4.25821 4.26909 4.33830 4.40240 4.40745 4.45509 4.47764 4.53481 4.54229 4.63221 4.68633 4.72381 4.85183 4.89453 4.91483 4.92445 5.01655 5.06451 5.19117 5.20469 5.30999 5.36637 5.42334 5.51324 5.51711 5.68822 5.80964 5.91410 5.92729 6.17392 6.21632 6.30765 6.53597 6.63682 6.80268 7.07065 7.53791 8.86734 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.018167 B = 0.002012 C = 0.001954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1540.892163 B =13910.009353 C =14325.258279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.144 4.144 3 C 0.210 3.790 4 H 0.006 0.994 5 C -0.578 4.578 6 H 0.038 0.962 7 C -0.023 4.023 8 N -0.936 5.936 9 Si 1.105 2.895 10 H -0.284 1.284 11 H -0.275 1.275 12 H -0.279 1.279 13 N -0.677 5.677 14 C 0.044 3.956 15 C 0.519 3.481 16 O -0.568 6.568 17 N -0.615 5.615 18 C 0.108 3.892 19 C 0.047 3.953 20 N -0.488 5.488 21 C 0.101 3.899 22 C -0.192 4.192 23 C -0.097 4.097 24 C -0.156 4.156 25 C -0.070 4.070 26 C -0.114 4.114 27 C -0.151 4.151 28 C 0.046 3.954 29 C 0.116 3.884 30 H 0.042 0.958 31 H 0.054 0.946 32 H 0.044 0.956 33 H 0.046 0.954 34 H 0.046 0.954 35 H 0.260 0.740 36 H 0.337 0.663 37 H 0.069 0.931 38 H 0.099 0.901 39 H 0.097 0.903 40 H 0.102 0.898 41 H 0.038 0.962 42 H 0.114 0.886 43 H 0.129 0.871 44 H 0.138 0.862 45 H 0.137 0.863 46 H 0.079 0.921 47 H 0.072 0.928 48 H 0.075 0.925 49 H 0.134 0.866 50 H 0.039 0.961 51 H 0.109 0.891 52 H 0.084 0.916 53 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.101 1.240 26.991 29.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.184 4.184 3 C 0.101 3.899 4 H 0.024 0.976 5 C -0.617 4.617 6 H 0.056 0.944 7 C -0.222 4.222 8 N -0.574 5.574 9 Si 0.929 3.071 10 H -0.210 1.210 11 H -0.200 1.200 12 H -0.205 1.205 13 N -0.310 5.310 14 C -0.088 4.088 15 C 0.308 3.692 16 O -0.446 6.446 17 N -0.349 5.349 18 C -0.014 4.014 19 C -0.079 4.079 20 N -0.204 5.204 21 C 0.004 3.996 22 C -0.212 4.212 23 C -0.116 4.116 24 C -0.175 4.175 25 C -0.071 4.071 26 C -0.170 4.170 27 C -0.171 4.171 28 C -0.081 4.081 29 C -0.006 4.006 30 H 0.061 0.939 31 H 0.073 0.927 32 H 0.063 0.937 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.070 0.930 36 H 0.157 0.843 37 H 0.087 0.913 38 H 0.117 0.883 39 H 0.115 0.885 40 H 0.120 0.880 41 H 0.056 0.944 42 H 0.132 0.868 43 H 0.147 0.853 44 H 0.156 0.844 45 H 0.155 0.845 46 H 0.097 0.903 47 H 0.091 0.909 48 H 0.094 0.906 49 H 0.151 0.849 50 H 0.058 0.942 51 H 0.127 0.873 52 H 0.102 0.898 53 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 10.550 1.680 25.388 27.544 hybrid contribution 0.015 -0.096 1.316 1.320 sum 10.565 1.585 26.704 28.761 Atomic orbital electron populations 1.21471 0.95646 0.99903 1.01023 1.22083 0.97138 0.99712 0.99476 1.19146 0.93888 0.89498 0.87378 0.97586 1.22053 1.29916 1.17299 0.92426 0.94412 1.26857 0.96700 0.95895 1.02733 1.70907 1.23524 1.28022 1.34971 0.83069 0.75631 0.75324 0.73122 1.20991 1.20045 1.20496 1.60470 1.05805 1.62716 1.02011 1.21882 0.98744 0.99151 0.89016 1.20854 0.83382 0.79665 0.85343 1.90657 1.26325 1.41292 1.86337 1.48245 1.26793 1.52614 1.07259 1.22195 0.82247 0.94305 1.02691 1.22744 0.98443 0.99568 0.87152 1.59070 1.06171 1.39019 1.16099 1.19086 0.91367 0.92013 0.97150 1.21487 1.01404 0.94350 1.03983 1.21262 0.93111 1.00296 0.96907 1.21264 0.98543 0.95174 1.02515 1.20112 0.96418 0.94773 0.95786 1.20843 0.93133 1.00224 1.02821 1.20833 0.92804 1.00541 1.02891 1.22602 0.90163 0.93535 1.01847 1.21728 0.96395 0.98545 0.83943 0.93887 0.92735 0.93710 0.93571 0.93584 0.92980 0.84315 0.91297 0.88332 0.88472 0.87972 0.94393 0.86753 0.85290 0.84440 0.84511 0.90269 0.90935 0.90561 0.84863 0.94238 0.87266 0.89755 0.89417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.09 9.38 71.98 0.68 -4.42 16 2 C -0.14 -6.39 5.46 30.60 0.17 -6.22 16 3 C 0.21 10.28 1.95 44.17 0.09 10.36 16 4 H 0.01 0.33 7.31 -2.38 -0.02 0.31 16 5 C -0.58 -32.35 7.43 25.60 0.19 -32.16 16 6 H 0.04 2.21 7.82 -2.91 -0.02 2.19 16 7 C -0.02 -1.32 5.27 84.65 0.45 -0.87 16 8 N -0.94 -55.06 12.87 21.45 0.28 -54.78 16 9 Si 1.10 50.93 29.91 68.60 2.05 52.98 16 10 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 11 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 12 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 13 N -0.68 -29.85 5.93 -499.45 -2.96 -32.81 16 14 C 0.04 1.50 4.35 85.56 0.37 1.88 16 15 C 0.52 17.05 7.74 87.66 0.68 17.73 16 16 O -0.57 -23.33 15.55 -3.03 -0.05 -23.37 16 17 N -0.61 -14.84 3.00 -817.11 -2.45 -17.29 16 18 C 0.11 1.88 6.53 86.50 0.57 2.45 16 19 C 0.05 0.77 5.44 86.54 0.47 1.24 16 20 N -0.49 -8.55 4.67 -693.54 -3.24 -11.79 16 21 C 0.10 1.81 5.64 38.21 0.22 2.02 16 22 C -0.19 -3.29 8.83 22.40 0.20 -3.09 16 23 C -0.10 -1.46 10.04 22.25 0.22 -1.23 16 24 C -0.16 -2.19 9.70 22.29 0.22 -1.98 16 25 C -0.07 -1.00 5.88 -19.89 -0.12 -1.12 16 26 C -0.11 -1.04 10.01 71.24 0.71 -0.33 16 27 C -0.15 -2.40 8.80 22.40 0.20 -2.21 16 28 C 0.05 0.83 4.30 86.37 0.37 1.20 16 29 C 0.12 2.46 6.59 86.33 0.57 3.03 16 30 H 0.04 1.98 7.30 -2.38 -0.02 1.96 16 31 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 32 H 0.04 1.76 6.24 -2.39 -0.01 1.75 16 33 H 0.05 2.28 6.27 -2.39 -0.01 2.26 16 34 H 0.05 1.76 7.04 -2.39 -0.02 1.75 16 35 H 0.26 15.21 6.05 -92.71 -0.56 14.65 16 36 H 0.34 15.08 6.02 -89.70 -0.54 14.54 16 37 H 0.07 2.07 6.85 -2.39 -0.02 2.05 16 38 H 0.10 3.19 7.67 -2.39 -0.02 3.17 16 39 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 40 H 0.10 1.69 6.02 -2.38 -0.01 1.67 16 41 H 0.04 0.74 8.14 -2.38 -0.02 0.72 16 42 H 0.11 1.42 6.67 -2.39 -0.02 1.41 16 43 H 0.13 2.01 5.81 -2.91 -0.02 2.00 16 44 H 0.14 1.49 8.06 -2.91 -0.02 1.47 16 45 H 0.14 1.35 8.06 -2.91 -0.02 1.32 16 46 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 47 H 0.07 0.59 8.09 -2.39 -0.02 0.57 16 48 H 0.08 0.56 8.08 -2.38 -0.02 0.54 16 49 H 0.13 1.78 7.16 -2.91 -0.02 1.76 16 50 H 0.04 0.82 7.82 -2.39 -0.02 0.80 16 51 H 0.11 1.62 6.89 -2.39 -0.02 1.61 16 52 H 0.08 2.09 7.06 -2.39 -0.02 2.07 16 53 H 0.09 1.63 8.14 -2.38 -0.02 1.61 16 Total: -1.00 -70.37 405.57 0.44 -69.93 By element: Atomic # 1 Polarization: 30.28 SS G_CDS: 0.58 Total: 30.86 kcal Atomic # 6 Polarization: -19.95 SS G_CDS: 6.24 Total: -13.71 kcal Atomic # 7 Polarization: -108.30 SS G_CDS: -8.38 Total: -116.68 kcal Atomic # 8 Polarization: -23.33 SS G_CDS: -0.05 Total: -23.37 kcal Atomic # 14 Polarization: 50.93 SS G_CDS: 2.05 Total: 52.98 kcal Total: -70.37 0.44 -69.93 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000577505743.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.962 kcal (2) G-P(sol) polarization free energy of solvation -70.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds