Wall clock time and date at job start Wed Apr 1 2020 04:13:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53000 * 109.47393 * 2 1 4 4 H 1.08994 * 109.47107 * 185.59800 * 3 2 1 5 5 C 1.50705 * 109.47053 * 305.60458 * 3 2 1 6 6 H 1.07999 * 120.00329 * 119.99874 * 5 3 2 7 7 C 1.37881 * 119.99606 * 299.99890 * 5 3 2 8 8 N 1.31515 * 119.99715 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 120.00040 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47478 * 89.99818 * 9 7 5 11 11 H 1.48503 * 109.47188 * 210.00205 * 9 7 5 12 12 H 1.48507 * 109.46808 * 329.99613 * 9 7 5 13 13 N 1.46901 * 109.47012 * 65.59949 * 3 2 1 14 14 C 1.46892 * 110.99904 * 87.52460 * 13 3 2 15 15 C 1.50706 * 109.47370 * 184.28361 * 14 13 3 16 16 O 1.21279 * 119.99692 * 359.97438 * 15 14 13 17 17 N 1.34774 * 120.00449 * 179.97438 * 15 14 13 18 18 C 1.46496 * 120.00146 * 179.97438 * 17 15 14 19 19 C 1.53002 * 109.47180 * 180.02562 * 18 17 15 20 20 H 1.09000 * 110.87555 * 57.39054 * 19 18 17 21 21 C 1.55141 * 110.98980 * 293.55066 * 19 18 17 22 22 C 1.54320 * 103.01697 * 206.21962 * 21 19 18 23 23 N 1.47438 * 107.23305 * 22.27897 * 22 21 19 24 24 C 1.39677 * 110.99889 * 123.26487 * 23 22 21 25 25 C 1.38913 * 120.07734 * 36.48354 * 24 23 22 26 26 C 1.38101 * 119.92640 * 179.97438 * 25 24 23 27 27 C 1.38283 * 120.07456 * 0.02562 * 26 25 24 28 28 C 1.38286 * 120.14917 * 0.27475 * 27 26 25 29 29 C 1.38104 * 120.07511 * 359.45072 * 28 27 26 30 30 C 1.47838 * 108.57061 * 0.99335 * 23 22 21 31 31 H 1.08993 * 109.47479 * 183.51109 * 1 2 3 32 32 H 1.09001 * 109.47076 * 303.51327 * 1 2 3 33 33 H 1.09004 * 109.46621 * 63.50877 * 1 2 3 34 34 H 1.08997 * 109.46996 * 239.99512 * 2 1 3 35 35 H 1.08999 * 109.46844 * 119.99683 * 2 1 3 36 36 H 0.97011 * 119.99583 * 180.02562 * 8 7 5 37 37 H 1.00905 * 111.00239 * 323.57038 * 13 3 2 38 38 H 1.08995 * 109.47484 * 64.28546 * 14 13 3 39 39 H 1.09006 * 109.47312 * 304.28036 * 14 13 3 40 40 H 0.97004 * 120.00032 * 0.02562 * 17 15 14 41 41 H 1.09003 * 109.47005 * 60.00326 * 18 17 15 42 42 H 1.08997 * 109.47490 * 300.00276 * 18 17 15 43 43 H 1.08993 * 110.70974 * 87.83128 * 21 19 18 44 44 H 1.09001 * 110.85102 * 324.66493 * 21 19 18 45 45 H 1.09004 * 109.88167 * 262.87708 * 22 21 19 46 46 H 1.09002 * 109.89125 * 141.68924 * 22 21 19 47 47 H 1.08003 * 120.03756 * 359.96088 * 25 24 23 48 48 H 1.08003 * 119.96410 * 180.02562 * 26 25 24 49 49 H 1.08006 * 119.92545 * 179.97438 * 27 26 25 50 50 H 1.08004 * 119.95829 * 179.69997 * 28 27 26 51 51 H 1.07999 * 120.03611 * 180.27276 * 29 28 27 52 52 H 1.09007 * 110.37452 * 94.73091 * 30 23 22 53 53 H 1.09000 * 110.37746 * 217.07537 * 30 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1255 1.4441 -0.1002 5 6 1.4277 2.1918 -1.1552 6 1 0.8199 3.0653 -0.9709 7 6 1.6434 1.7622 -2.4475 8 7 2.3832 0.6982 -2.6719 9 14 0.8850 2.6914 -3.8796 10 1 1.8238 3.7467 -4.3378 11 1 0.6173 1.7486 -4.9952 12 1 -0.3893 3.3174 -3.4441 13 7 1.6639 2.0949 1.2613 14 6 2.6792 1.8627 2.2972 15 6 2.2108 2.4553 3.6014 16 8 1.1372 3.0162 3.6617 17 7 2.9850 2.3619 4.7006 18 6 2.5299 2.9385 5.9682 19 6 3.5873 2.6966 7.0473 20 1 4.5477 3.1189 6.7516 21 6 3.7199 1.1841 7.3662 22 6 4.2378 1.1796 8.8200 23 7 3.8682 2.4750 9.4193 24 6 3.1034 2.2923 10.5738 25 6 3.3753 1.2314 11.4283 26 6 2.6175 1.0541 12.5692 27 6 1.5888 1.9308 12.8610 28 6 1.3115 2.9844 12.0093 29 6 2.0689 3.1709 10.8697 30 6 3.1279 3.2653 8.4129 31 1 -0.3634 -1.0256 0.0629 32 1 -0.3633 0.5674 0.8568 33 1 -0.3633 0.4584 -0.9198 34 1 1.8934 -0.5139 -0.8899 35 1 1.8933 -0.5138 0.8900 36 1 2.5352 0.3962 -3.5811 37 1 0.7544 1.7864 1.5708 38 1 3.6160 2.3338 1.9999 39 1 2.8344 0.7908 2.4202 40 1 3.8439 1.9136 4.6523 41 1 1.5927 2.4681 6.2655 42 1 2.3755 4.0104 5.8452 43 1 4.4404 0.7112 6.6990 44 1 2.7519 0.6874 7.3004 45 1 5.3216 1.0634 8.8271 46 1 3.7718 0.3668 9.3771 47 1 4.1782 0.5459 11.2007 48 1 2.8286 0.2297 13.2342 49 1 0.9974 1.7896 13.7537 50 1 0.5042 3.6645 12.2377 51 1 1.8546 3.9965 10.2072 52 1 2.0537 3.1292 8.5387 53 1 3.3893 4.3206 8.4918 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000579855194.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:13:40 Heat of formation + Delta-G solvation = -21.603191 kcal Electronic energy + Delta-G solvation = -29385.659422 eV Core-core repulsion = 25449.020431 eV Total energy + Delta-G solvation = -3936.638992 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.53661 -40.66843 -38.86582 -38.03180 -36.10077 -34.43602 -33.46471 -32.45010 -32.23858 -30.58703 -29.51356 -28.88136 -27.25689 -25.65596 -24.90227 -23.95455 -23.20899 -21.83534 -21.27799 -21.21028 -20.99958 -18.82370 -18.34723 -17.64038 -17.52583 -16.92105 -16.70886 -16.59859 -16.31956 -15.96113 -15.73918 -15.34895 -15.17705 -14.98220 -14.66652 -14.50435 -14.46049 -14.17073 -14.09204 -13.92269 -13.76720 -13.63024 -13.28634 -13.12577 -12.81944 -12.71054 -12.66297 -12.43742 -12.35389 -12.26796 -11.93576 -11.89731 -11.79094 -11.72045 -11.65424 -11.42306 -11.09315 -10.76305 -10.71801 -10.40650 -10.09503 -9.84249 -8.93135 -8.76845 -8.04667 -6.11461 0.47903 0.48577 1.43293 1.45115 1.54984 1.66948 2.10855 2.47972 2.66451 3.03764 3.24341 3.45791 3.53504 3.73542 3.76359 3.96840 3.99782 4.09020 4.22412 4.27074 4.28358 4.33088 4.45925 4.49591 4.53763 4.55794 4.58482 4.58969 4.63380 4.64013 4.72657 4.76216 4.84831 4.87800 4.93070 5.02096 5.10769 5.11054 5.22054 5.28727 5.33391 5.41999 5.45165 5.52622 5.67405 5.68448 5.76105 5.84069 5.84837 5.96814 6.31850 6.32881 6.51527 6.69216 6.82150 6.98715 7.30336 7.55729 9.00518 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.027218 B = 0.001584 C = 0.001575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.500247 B =17669.279179 C =17772.382226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.137 4.137 3 C 0.221 3.779 4 H 0.012 0.988 5 C -0.501 4.501 6 H 0.045 0.955 7 C 0.017 3.983 8 N -0.916 5.916 9 Si 0.948 3.052 10 H -0.279 1.279 11 H -0.283 1.283 12 H -0.275 1.275 13 N -0.683 5.683 14 C 0.042 3.958 15 C 0.517 3.483 16 O -0.572 6.572 17 N -0.715 5.715 18 C 0.135 3.865 19 C -0.096 4.096 20 H 0.106 0.894 21 C -0.134 4.134 22 C 0.037 3.963 23 N -0.484 5.484 24 C 0.097 3.903 25 C -0.170 4.170 26 C -0.099 4.099 27 C -0.162 4.162 28 C -0.101 4.101 29 C -0.181 4.181 30 C 0.047 3.953 31 H 0.046 0.954 32 H 0.041 0.959 33 H 0.039 0.961 34 H 0.067 0.933 35 H 0.032 0.968 36 H 0.259 0.741 37 H 0.334 0.666 38 H 0.103 0.897 39 H 0.067 0.933 40 H 0.416 0.584 41 H 0.056 0.944 42 H 0.061 0.939 43 H 0.099 0.901 44 H 0.065 0.935 45 H 0.095 0.905 46 H 0.072 0.928 47 H 0.134 0.866 48 H 0.141 0.859 49 H 0.137 0.863 50 H 0.137 0.863 51 H 0.129 0.871 52 H 0.062 0.938 53 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.205 -1.410 30.928 31.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.177 4.177 3 C 0.112 3.888 4 H 0.030 0.970 5 C -0.540 4.540 6 H 0.063 0.937 7 C -0.181 4.181 8 N -0.557 5.557 9 Si 0.775 3.225 10 H -0.205 1.205 11 H -0.209 1.209 12 H -0.200 1.200 13 N -0.316 5.316 14 C -0.090 4.090 15 C 0.304 3.696 16 O -0.450 6.450 17 N -0.369 5.369 18 C 0.011 3.989 19 C -0.116 4.116 20 H 0.125 0.875 21 C -0.172 4.172 22 C -0.088 4.088 23 N -0.197 5.197 24 C -0.002 4.002 25 C -0.190 4.190 26 C -0.118 4.118 27 C -0.181 4.181 28 C -0.119 4.119 29 C -0.202 4.202 30 C -0.079 4.079 31 H 0.065 0.935 32 H 0.060 0.940 33 H 0.058 0.942 34 H 0.085 0.915 35 H 0.051 0.949 36 H 0.069 0.931 37 H 0.154 0.846 38 H 0.121 0.879 39 H 0.085 0.915 40 H 0.252 0.748 41 H 0.074 0.926 42 H 0.080 0.920 43 H 0.117 0.883 44 H 0.084 0.916 45 H 0.113 0.887 46 H 0.090 0.910 47 H 0.152 0.848 48 H 0.159 0.841 49 H 0.155 0.845 50 H 0.155 0.845 51 H 0.147 0.853 52 H 0.080 0.920 53 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 5.268 -0.225 30.720 31.170 hybrid contribution -0.704 -0.897 -1.003 1.519 sum 4.564 -1.122 29.718 30.087 Atomic orbital electron populations 1.21464 0.96525 0.99232 1.00599 1.21959 0.96071 0.99822 0.99862 1.19031 0.94370 0.89448 0.85906 0.97032 1.21257 1.30428 1.11314 0.91029 0.93663 1.25508 0.96005 0.95918 1.00688 1.69981 1.40002 1.24863 1.20828 0.85709 0.78861 0.78518 0.79431 1.20505 1.20877 1.20014 1.60502 1.04364 1.63534 1.03180 1.21872 0.97929 0.99795 0.89426 1.20854 0.84118 0.78817 0.85834 1.90670 1.24209 1.44382 1.85782 1.45755 1.23077 1.59432 1.08629 1.21174 0.96879 0.98508 0.82313 1.22440 0.99435 0.96655 0.93036 0.87544 1.22879 1.02485 0.95525 0.96353 1.23170 1.02563 0.88780 0.94266 1.60582 1.37784 1.16752 1.04625 1.19373 0.91731 0.95204 0.93899 1.21095 1.02801 0.98622 0.96523 1.21313 0.94833 0.99290 0.96321 1.21371 0.99495 0.96205 1.01018 1.21301 0.99043 0.97896 0.93709 1.21241 0.96864 1.01813 1.00263 1.23226 0.96991 0.98960 0.88744 0.93539 0.94027 0.94155 0.91482 0.94925 0.93131 0.84642 0.87947 0.91519 0.74750 0.92595 0.92042 0.88286 0.91576 0.88720 0.90986 0.84831 0.84093 0.84475 0.84540 0.85269 0.91950 0.88747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.14 9.38 71.98 0.68 -4.46 16 2 C -0.14 -6.26 5.51 30.60 0.17 -6.09 16 3 C 0.22 10.83 2.34 44.17 0.10 10.93 16 4 H 0.01 0.62 7.81 -2.39 -0.02 0.60 16 5 C -0.50 -27.66 7.40 25.60 0.19 -27.47 16 6 H 0.05 2.61 7.81 -2.91 -0.02 2.58 16 7 C 0.02 0.94 5.24 84.66 0.44 1.39 16 8 N -0.92 -51.33 11.38 21.45 0.24 -51.09 16 9 Si 0.95 44.24 29.54 68.60 2.03 46.27 16 10 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 11 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 12 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 13 N -0.68 -29.63 5.94 -499.47 -2.97 -32.60 16 14 C 0.04 1.39 5.95 85.56 0.51 1.90 16 15 C 0.52 15.93 7.86 87.66 0.69 16.62 16 16 O -0.57 -22.88 16.10 -3.02 -0.05 -22.93 16 17 N -0.71 -14.45 5.41 -463.06 -2.50 -16.95 16 18 C 0.14 2.45 5.12 86.38 0.44 2.89 16 19 C -0.10 -1.17 3.10 -9.41 -0.03 -1.20 16 20 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 21 C -0.13 -1.45 6.11 31.78 0.19 -1.26 16 22 C 0.04 0.43 6.18 86.65 0.54 0.97 16 23 N -0.48 -7.20 5.27 -685.17 -3.61 -10.82 16 24 C 0.10 1.60 5.78 38.21 0.22 1.82 16 25 C -0.17 -2.51 8.59 22.40 0.19 -2.32 16 26 C -0.10 -1.29 10.04 22.25 0.22 -1.07 16 27 C -0.16 -2.12 10.04 22.29 0.22 -1.90 16 28 C -0.10 -1.44 10.04 22.25 0.22 -1.22 16 29 C -0.18 -2.92 8.66 22.40 0.19 -2.73 16 30 C 0.05 0.64 4.94 86.77 0.43 1.07 16 31 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.04 1.67 6.34 -2.39 -0.02 1.65 16 33 H 0.04 1.90 7.15 -2.38 -0.02 1.88 16 34 H 0.07 3.45 6.24 -2.39 -0.01 3.43 16 35 H 0.03 1.30 7.48 -2.39 -0.02 1.28 16 36 H 0.26 13.94 8.31 -92.70 -0.77 13.17 16 37 H 0.33 14.70 6.05 -89.69 -0.54 14.16 16 38 H 0.10 3.17 8.13 -2.39 -0.02 3.15 16 39 H 0.07 1.95 7.47 -2.38 -0.02 1.94 16 40 H 0.42 5.72 8.34 -92.71 -0.77 4.95 16 41 H 0.06 1.17 8.11 -2.39 -0.02 1.15 16 42 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 43 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 44 H 0.07 0.87 8.02 -2.39 -0.02 0.85 16 45 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 46 H 0.07 0.83 5.95 -2.39 -0.01 0.82 16 47 H 0.13 1.60 6.78 -2.91 -0.02 1.58 16 48 H 0.14 1.18 8.06 -2.91 -0.02 1.16 16 49 H 0.14 1.21 8.06 -2.91 -0.02 1.18 16 50 H 0.14 1.41 8.06 -2.91 -0.02 1.39 16 51 H 0.13 1.86 6.40 -2.91 -0.02 1.85 16 52 H 0.06 0.92 6.38 -2.38 -0.02 0.90 16 53 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 Total: -1.00 -68.40 413.05 -1.64 -70.04 By element: Atomic # 1 Polarization: 30.60 SS G_CDS: -0.40 Total: 30.20 kcal Atomic # 6 Polarization: -17.74 SS G_CDS: 5.63 Total: -12.12 kcal Atomic # 7 Polarization: -102.61 SS G_CDS: -8.84 Total: -111.46 kcal Atomic # 8 Polarization: -22.88 SS G_CDS: -0.05 Total: -22.93 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.27 kcal Total: -68.40 -1.64 -70.04 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000579855194.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.433 kcal (2) G-P(sol) polarization free energy of solvation -68.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds