Wall clock time and date at job start Wed Apr 1 2020 04:13:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47280 * 2 1 4 4 H 1.09009 * 109.46913 * 177.95386 * 3 2 1 5 5 C 1.50697 * 109.47322 * 57.95359 * 3 2 1 6 6 H 1.07999 * 119.99814 * 240.00661 * 5 3 2 7 7 C 1.37872 * 120.00163 * 59.99521 * 5 3 2 8 8 N 1.31517 * 119.99745 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 120.00462 * 180.02562 * 7 5 3 10 10 H 1.48507 * 109.46642 * 60.00175 * 9 7 5 11 11 H 1.48497 * 109.47520 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.46882 * 300.00372 * 9 7 5 13 13 N 1.46899 * 109.47161 * 297.95187 * 3 2 1 14 14 C 1.46904 * 111.00036 * 273.83263 * 13 3 2 15 15 C 1.50701 * 109.47439 * 174.45838 * 14 13 3 16 16 O 1.21284 * 119.99468 * 0.02562 * 15 14 13 17 17 N 1.34771 * 120.00564 * 179.97438 * 15 14 13 18 18 C 1.46494 * 120.00354 * 180.02562 * 17 15 14 19 19 C 1.53005 * 109.47238 * 180.02562 * 18 17 15 20 20 H 1.09002 * 110.28295 * 304.32643 * 19 18 17 21 21 C 1.54253 * 110.32659 * 66.44989 * 19 18 17 22 22 C 1.54380 * 105.06064 * 118.89586 * 21 19 18 23 23 N 1.48556 * 104.59282 * 23.85636 * 22 21 19 24 24 C 1.39679 * 110.99822 * 200.96155 * 23 22 21 25 25 C 1.38908 * 120.07604 * 119.84781 * 24 23 22 26 26 C 1.38110 * 119.92191 * 179.76389 * 25 24 23 27 27 C 1.38283 * 120.07499 * 0.51327 * 26 25 24 28 28 C 1.38284 * 120.15084 * 359.73752 * 27 26 25 29 29 C 1.38104 * 120.07234 * 0.02562 * 28 27 26 30 30 C 1.48560 * 104.22121 * 320.51315 * 23 22 21 31 31 H 1.08995 * 109.46966 * 174.46649 * 1 2 3 32 32 H 1.09005 * 109.46367 * 294.46616 * 1 2 3 33 33 H 1.08995 * 109.47070 * 54.45861 * 1 2 3 34 34 H 1.09001 * 109.46862 * 240.00434 * 2 1 3 35 35 H 1.08999 * 109.47292 * 120.00206 * 2 1 3 36 36 H 0.97005 * 120.00129 * 179.97438 * 8 7 5 37 37 H 1.00902 * 111.00211 * 149.88148 * 13 3 2 38 38 H 1.08992 * 109.47351 * 54.45531 * 14 13 3 39 39 H 1.09004 * 109.47015 * 294.45870 * 14 13 3 40 40 H 0.96999 * 119.99650 * 359.97438 * 17 15 14 41 41 H 1.09002 * 109.47210 * 59.99777 * 18 17 15 42 42 H 1.09004 * 109.47102 * 300.00064 * 18 17 15 43 43 H 1.08993 * 110.32648 * 237.79828 * 21 19 18 44 44 H 1.09006 * 110.32682 * 359.89913 * 21 19 18 45 45 H 1.08999 * 110.41133 * 142.63423 * 22 21 19 46 46 H 1.08999 * 110.41422 * 265.07473 * 22 21 19 47 47 H 1.07997 * 120.03699 * 0.02562 * 25 24 23 48 48 H 1.07997 * 119.96152 * 180.25274 * 26 25 24 49 49 H 1.08003 * 119.92485 * 179.76337 * 27 26 25 50 50 H 1.08001 * 119.96123 * 180.02562 * 28 27 26 51 51 H 1.08001 * 120.03457 * 179.97438 * 29 28 27 52 52 H 1.08995 * 110.41295 * 280.70448 * 30 23 22 53 53 H 1.08999 * 110.41056 * 158.26031 * 30 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1295 1.4426 0.0367 5 6 1.4968 2.1674 1.2043 6 1 0.8797 3.0441 1.0738 7 6 1.7873 1.7114 2.4725 8 7 2.5390 0.6439 2.6313 9 14 1.1133 2.6095 3.9654 10 1 -0.3709 2.6087 3.9151 11 1 1.5675 1.9245 5.2021 12 1 1.6078 4.0097 3.9655 13 7 1.5912 2.1205 -1.2234 14 6 2.5277 1.8839 -2.3303 15 6 1.9683 2.4778 -3.5973 16 8 0.8953 3.0429 -3.5799 17 7 2.6607 2.3818 -4.7496 18 6 2.1171 2.9595 -5.9812 19 6 3.0924 2.7130 -7.1340 20 1 4.0776 3.1083 -6.8866 21 6 3.1831 1.2050 -7.4458 22 6 2.7008 1.0676 -8.9059 23 7 2.9392 2.4054 -9.5063 24 6 2.1476 2.5926 -10.6418 25 6 1.2290 3.6336 -10.6861 26 6 0.4514 3.8188 -11.8124 27 6 0.5790 2.9629 -12.8910 28 6 1.4888 1.9224 -12.8481 29 6 2.2730 1.7345 -11.7270 30 6 2.5630 3.3599 -8.4319 31 1 -0.3633 -1.0228 -0.0991 32 1 -0.3632 0.4257 0.9355 33 1 -0.3633 0.5973 -0.8362 34 1 1.8933 -0.5138 -0.8900 35 1 1.8934 -0.5139 0.8899 36 1 2.7437 0.3233 3.5236 37 1 1.4632 3.1085 -1.0631 38 1 2.6694 0.8114 -2.4633 39 1 3.4856 2.3513 -2.1020 40 1 3.5193 1.9307 -4.7633 41 1 1.9754 4.0320 -5.8477 42 1 1.1592 2.4922 -6.2098 43 1 4.2130 0.8605 -7.3533 44 1 2.5342 0.6402 -6.7764 45 1 3.2818 0.3075 -9.4282 46 1 1.6393 0.8219 -8.9341 47 1 1.1260 4.3000 -9.8425 48 1 -0.2601 4.6304 -11.8491 49 1 -0.0330 3.1076 -13.7690 50 1 1.5863 1.2560 -13.6924 51 1 2.9831 0.9214 -11.6940 52 1 1.4799 3.4729 -8.3859 53 1 3.0402 4.3258 -8.5972 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000579855195.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:13:44 Heat of formation + Delta-G solvation = -20.797639 kcal Electronic energy + Delta-G solvation = -29367.448808 eV Core-core repulsion = 25430.844747 eV Total energy + Delta-G solvation = -3936.604060 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -41.46445 -40.59791 -38.90313 -37.84375 -36.07110 -34.44915 -33.47472 -32.52722 -32.11045 -30.67363 -29.45153 -28.95714 -27.15746 -25.57865 -24.86226 -23.89529 -23.47078 -21.84718 -21.33981 -20.97424 -20.68926 -18.84543 -18.41335 -17.61167 -17.47085 -16.98010 -16.80499 -16.50542 -16.43836 -15.98082 -15.55477 -15.31204 -15.18395 -15.03159 -14.88214 -14.55017 -14.32361 -14.26476 -13.95460 -13.73653 -13.54729 -13.47140 -13.16482 -13.06582 -12.97550 -12.79881 -12.67034 -12.41760 -12.37951 -12.18138 -11.99285 -11.94442 -11.87442 -11.72459 -11.49237 -11.32143 -10.84960 -10.74353 -10.65061 -10.49885 -10.06745 -9.87001 -8.97738 -8.91382 -8.08710 -6.19421 0.42374 0.47331 1.43328 1.44835 1.51854 1.71234 2.13151 2.44915 2.70219 3.00224 3.20291 3.50869 3.56785 3.76481 3.78570 3.99464 4.02309 4.06672 4.19609 4.25302 4.32758 4.34979 4.46236 4.52090 4.53311 4.55425 4.57825 4.65806 4.67594 4.70246 4.81482 4.84817 4.85268 4.96133 4.96296 5.05606 5.12824 5.17034 5.30431 5.34287 5.38313 5.48655 5.49941 5.56759 5.64763 5.72726 5.80560 5.82199 5.89198 5.89655 6.29115 6.31617 6.46254 6.56562 6.81375 7.00453 7.34739 7.48627 8.96041 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.028515 B = 0.001579 C = 0.001561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.697188 B =17729.253641 C =17937.483110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.097 4.097 3 C 0.222 3.778 4 H -0.021 1.021 5 C -0.527 4.527 6 H 0.051 0.949 7 C 0.022 3.978 8 N -0.912 5.912 9 Si 0.951 3.049 10 H -0.276 1.276 11 H -0.283 1.283 12 H -0.273 1.273 13 N -0.675 5.675 14 C 0.043 3.957 15 C 0.518 3.482 16 O -0.570 6.570 17 N -0.717 5.717 18 C 0.133 3.867 19 C -0.092 4.092 20 H 0.103 0.897 21 C -0.121 4.121 22 C 0.040 3.960 23 N -0.472 5.472 24 C 0.084 3.916 25 C -0.184 4.184 26 C -0.106 4.106 27 C -0.153 4.153 28 C -0.104 4.104 29 C -0.148 4.148 30 C 0.036 3.964 31 H 0.035 0.965 32 H 0.029 0.971 33 H 0.046 0.954 34 H 0.028 0.972 35 H 0.061 0.939 36 H 0.261 0.739 37 H 0.333 0.667 38 H 0.104 0.896 39 H 0.064 0.936 40 H 0.415 0.585 41 H 0.061 0.939 42 H 0.053 0.947 43 H 0.093 0.907 44 H 0.075 0.925 45 H 0.096 0.904 46 H 0.044 0.956 47 H 0.132 0.868 48 H 0.137 0.863 49 H 0.139 0.861 50 H 0.143 0.857 51 H 0.131 0.869 52 H 0.060 0.940 53 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.319 1.548 -30.957 31.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.136 4.136 3 C 0.114 3.886 4 H -0.003 1.003 5 C -0.565 4.565 6 H 0.069 0.931 7 C -0.178 4.178 8 N -0.551 5.551 9 Si 0.777 3.223 10 H -0.202 1.202 11 H -0.209 1.209 12 H -0.199 1.199 13 N -0.306 5.306 14 C -0.090 4.090 15 C 0.305 3.695 16 O -0.448 6.448 17 N -0.371 5.371 18 C 0.009 3.991 19 C -0.111 4.111 20 H 0.122 0.878 21 C -0.159 4.159 22 C -0.085 4.085 23 N -0.187 5.187 24 C -0.014 4.014 25 C -0.204 4.204 26 C -0.124 4.124 27 C -0.171 4.171 28 C -0.122 4.122 29 C -0.168 4.168 30 C -0.091 4.091 31 H 0.054 0.946 32 H 0.048 0.952 33 H 0.065 0.935 34 H 0.046 0.954 35 H 0.079 0.921 36 H 0.071 0.929 37 H 0.150 0.850 38 H 0.122 0.878 39 H 0.082 0.918 40 H 0.252 0.748 41 H 0.079 0.921 42 H 0.071 0.929 43 H 0.111 0.889 44 H 0.094 0.906 45 H 0.114 0.886 46 H 0.062 0.938 47 H 0.150 0.850 48 H 0.155 0.845 49 H 0.157 0.843 50 H 0.161 0.839 51 H 0.148 0.852 52 H 0.078 0.922 53 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 2.805 1.366 -31.106 31.262 hybrid contribution 0.033 0.749 1.482 1.661 sum 2.837 2.115 -29.624 29.835 Atomic orbital electron populations 1.21312 0.96678 0.98315 1.00348 1.21323 0.95792 0.97600 0.98861 1.18973 0.91729 0.92183 0.85671 1.00321 1.21383 1.31612 1.12028 0.91507 0.93088 1.25530 0.95347 0.95714 1.01201 1.69984 1.38151 1.24020 1.22934 0.85726 0.78722 0.78822 0.79029 1.20200 1.20872 1.19862 1.60282 1.47596 1.16542 1.06217 1.21838 0.95015 1.02295 0.89806 1.20855 0.84364 0.78747 0.85568 1.90669 1.23320 1.44305 1.86488 1.45793 1.24349 1.59437 1.07549 1.21321 0.96483 0.98329 0.83004 1.22046 0.99829 0.96635 0.92578 0.87827 1.22459 1.03484 0.95128 0.94809 1.23213 0.99978 0.90143 0.95202 1.62566 1.47612 1.04958 1.03577 1.19306 0.92086 0.96567 0.93421 1.21570 0.97394 1.01057 1.00371 1.21326 0.98644 0.99393 0.93059 1.21421 1.00154 0.95987 0.99566 1.21347 0.95099 0.97885 0.97907 1.21009 1.01760 1.00747 0.93282 1.23285 0.99912 0.96889 0.89037 0.94590 0.95206 0.93487 0.95364 0.92054 0.92939 0.84973 0.87830 0.91810 0.74798 0.92112 0.92889 0.88860 0.90593 0.88586 0.93754 0.84979 0.84538 0.84268 0.83911 0.85156 0.92164 0.88610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.98 9.46 71.98 0.68 -4.30 16 2 C -0.10 -4.63 5.57 30.59 0.17 -4.46 16 3 C 0.22 10.96 2.30 44.17 0.10 11.06 16 4 H -0.02 -1.09 7.84 -2.38 -0.02 -1.11 16 5 C -0.53 -28.53 7.33 25.60 0.19 -28.34 16 6 H 0.05 2.79 7.60 -2.91 -0.02 2.77 16 7 C 0.02 1.18 5.30 84.65 0.45 1.63 16 8 N -0.91 -51.09 11.34 21.45 0.24 -50.84 16 9 Si 0.95 43.53 29.54 68.60 2.03 45.55 16 10 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 11 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 12 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 13 N -0.67 -28.96 5.07 -499.46 -2.53 -31.49 16 14 C 0.04 1.42 5.94 85.56 0.51 1.93 16 15 C 0.52 16.00 7.88 87.66 0.69 16.69 16 16 O -0.57 -22.86 16.32 -3.04 -0.05 -22.91 16 17 N -0.72 -14.69 5.32 -463.06 -2.46 -17.16 16 18 C 0.13 2.45 4.76 86.38 0.41 2.86 16 19 C -0.09 -1.15 3.13 -9.90 -0.03 -1.18 16 20 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 21 C -0.12 -1.40 6.33 31.49 0.20 -1.20 16 22 C 0.04 0.53 5.92 86.45 0.51 1.04 16 23 N -0.47 -7.27 5.43 -681.37 -3.70 -10.97 16 24 C 0.08 1.41 5.47 38.21 0.21 1.62 16 25 C -0.18 -2.97 8.82 22.40 0.20 -2.77 16 26 C -0.11 -1.50 10.04 22.25 0.22 -1.27 16 27 C -0.15 -1.96 10.04 22.29 0.22 -1.73 16 28 C -0.10 -1.34 10.04 22.25 0.22 -1.12 16 29 C -0.15 -2.24 9.37 22.40 0.21 -2.03 16 30 C 0.04 0.50 4.80 86.45 0.41 0.91 16 31 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.03 1.46 7.37 -2.38 -0.02 1.44 16 33 H 0.05 2.14 7.50 -2.39 -0.02 2.12 16 34 H 0.03 1.20 7.42 -2.39 -0.02 1.18 16 35 H 0.06 3.25 6.13 -2.39 -0.01 3.24 16 36 H 0.26 14.04 8.31 -92.70 -0.77 13.27 16 37 H 0.33 14.94 8.10 -89.69 -0.73 14.21 16 38 H 0.10 3.16 7.38 -2.39 -0.02 3.15 16 39 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 40 H 0.42 5.91 8.32 -92.71 -0.77 5.14 16 41 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 42 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 43 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 44 H 0.08 0.99 7.63 -2.38 -0.02 0.97 16 45 H 0.10 1.08 8.03 -2.39 -0.02 1.07 16 46 H 0.04 0.67 7.97 -2.39 -0.02 0.66 16 47 H 0.13 1.91 5.79 -2.91 -0.02 1.89 16 48 H 0.14 1.41 8.06 -2.91 -0.02 1.38 16 49 H 0.14 1.16 8.06 -2.91 -0.02 1.13 16 50 H 0.14 1.16 8.06 -2.91 -0.02 1.14 16 51 H 0.13 1.67 7.89 -2.91 -0.02 1.65 16 52 H 0.06 0.89 6.02 -2.39 -0.01 0.88 16 53 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 Total: -1.00 -67.42 417.32 -1.48 -68.91 By element: Atomic # 1 Polarization: 30.18 SS G_CDS: -0.59 Total: 29.59 kcal Atomic # 6 Polarization: -16.26 SS G_CDS: 5.58 Total: -10.68 kcal Atomic # 7 Polarization: -102.01 SS G_CDS: -8.45 Total: -110.46 kcal Atomic # 8 Polarization: -22.86 SS G_CDS: -0.05 Total: -22.91 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.55 kcal Total: -67.42 -1.48 -68.91 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000579855195.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.110 kcal (2) G-P(sol) polarization free energy of solvation -67.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds