Wall clock time and date at job start Wed Apr 1 2020 04:13:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47052 * 2 1 4 4 H 1.08995 * 109.47021 * 305.87936 * 3 2 1 5 5 C 1.50703 * 109.47089 * 185.87958 * 3 2 1 6 6 H 1.08002 * 120.00139 * 239.28605 * 5 3 2 7 7 C 1.37873 * 120.00176 * 59.28111 * 5 3 2 8 8 N 1.31513 * 120.00060 * 199.41020 * 7 5 3 9 9 Si 1.86802 * 119.99670 * 19.40388 * 7 5 3 10 10 H 1.48504 * 109.46824 * 86.02986 * 9 7 5 11 11 H 1.48502 * 109.46890 * 206.02259 * 9 7 5 12 12 H 1.48492 * 109.47490 * 326.02319 * 9 7 5 13 13 N 1.46898 * 109.46992 * 65.88314 * 3 2 1 14 14 C 1.46907 * 110.99849 * 253.73640 * 13 3 2 15 15 C 1.50695 * 109.47129 * 184.87333 * 14 13 3 16 16 O 1.21284 * 120.00387 * 0.02562 * 15 14 13 17 17 N 1.34781 * 119.99825 * 180.02562 * 15 14 13 18 18 C 1.46498 * 120.00190 * 180.02562 * 17 15 14 19 19 C 1.52996 * 109.47375 * 180.02562 * 18 17 15 20 20 H 1.08991 * 110.64723 * 56.69055 * 19 18 17 21 21 C 1.54597 * 110.71993 * 293.53912 * 19 18 17 22 22 C 1.53988 * 105.14043 * 219.68412 * 21 19 18 23 23 N 1.47898 * 107.06218 * 358.77986 * 22 21 19 24 24 C 1.39671 * 111.00725 * 145.84238 * 23 22 21 25 25 C 1.38908 * 120.07598 * 239.60120 * 24 23 22 26 26 C 1.38106 * 119.92284 * 179.76683 * 25 24 23 27 27 C 1.38283 * 120.07626 * 0.50405 * 26 25 24 28 28 C 1.38284 * 120.14782 * 359.75010 * 27 26 25 29 29 C 1.38108 * 120.07697 * 359.97438 * 28 27 26 30 30 C 1.48536 * 105.81566 * 25.32443 * 23 22 21 31 31 H 1.09003 * 109.47157 * 57.81914 * 1 2 3 32 32 H 1.09000 * 109.47292 * 177.82074 * 1 2 3 33 33 H 1.08998 * 109.47097 * 297.82074 * 1 2 3 34 34 H 1.08997 * 109.47370 * 239.99904 * 2 1 3 35 35 H 1.08998 * 109.47020 * 120.00075 * 2 1 3 36 36 H 0.97001 * 119.99804 * 179.97438 * 8 7 5 37 37 H 1.00894 * 111.00404 * 17.68755 * 13 3 2 38 38 H 1.08995 * 109.46982 * 304.87583 * 14 13 3 39 39 H 1.09001 * 109.46527 * 64.87287 * 14 13 3 40 40 H 0.97004 * 119.99764 * 359.97438 * 17 15 14 41 41 H 1.09005 * 109.46860 * 299.99541 * 18 17 15 42 42 H 1.08994 * 109.47435 * 59.99162 * 18 17 15 43 43 H 1.08996 * 110.31522 * 338.60716 * 21 19 18 44 44 H 1.09004 * 110.30398 * 100.67370 * 21 19 18 45 45 H 1.09000 * 109.91700 * 118.13312 * 22 21 19 46 46 H 1.09002 * 109.91933 * 239.42506 * 22 21 19 47 47 H 1.08005 * 120.03821 * 359.97438 * 25 24 23 48 48 H 1.07999 * 119.95968 * 180.25117 * 26 25 24 49 49 H 1.07995 * 119.92601 * 179.72470 * 27 26 25 50 50 H 1.08002 * 119.96246 * 179.97438 * 28 27 26 51 51 H 1.07996 * 120.03982 * 179.97438 * 29 28 27 52 52 H 1.09005 * 110.66577 * 202.36100 * 30 23 22 53 53 H 1.08999 * 110.66354 * 79.23604 * 30 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5932 1.9858 -0.8326 5 6 3.5399 1.4450 -0.1455 6 1 4.1559 1.8959 0.6185 7 6 4.1260 0.8716 -1.2540 8 7 5.3946 0.5264 -1.2226 9 14 3.1179 0.5851 -2.8004 10 1 3.1293 1.8143 -3.6335 11 1 3.7036 -0.5409 -3.5714 12 1 1.7197 0.2540 -2.4256 13 7 1.6696 2.0928 1.2641 14 6 0.5739 3.0503 1.0623 15 6 0.3027 3.7823 2.3513 16 8 0.9578 3.5314 3.3407 17 7 -0.6681 4.7157 2.4048 18 6 -0.9315 5.4277 3.6577 19 6 -2.0735 6.4240 3.4479 20 1 -2.9652 5.9150 3.0820 21 6 -1.6473 7.5478 2.4755 22 6 -2.2542 8.8368 3.0598 23 7 -3.0047 8.4512 4.2745 24 6 -2.9333 9.4522 5.2459 25 6 -2.3853 9.1753 6.4919 26 6 -2.3119 10.1687 7.4485 27 6 -2.7927 11.4351 7.1707 28 6 -3.3437 11.7128 5.9331 29 6 -3.4150 10.7256 4.9700 30 6 -2.3759 7.1951 4.7572 31 1 -0.3633 0.5473 -0.8698 32 1 -0.3634 -1.0269 -0.0391 33 1 -0.3633 0.4796 0.9089 34 1 1.8933 -0.5138 -0.8899 35 1 1.8933 -0.5138 0.8900 36 1 5.8067 0.1226 -2.0024 37 1 1.4275 1.4089 1.9652 38 1 0.8549 3.7664 0.2900 39 1 -0.3237 2.5152 0.7524 40 1 -1.1918 4.9167 1.6134 41 1 -1.2119 4.7118 4.4304 42 1 -0.0339 5.9631 3.9670 43 1 -0.5606 7.6241 2.4385 44 1 -2.0467 7.3576 1.4793 45 1 -1.4598 9.5362 3.3205 46 1 -2.9294 9.2912 2.3347 47 1 -2.0139 8.1851 6.7112 48 1 -1.8822 9.9551 8.4160 49 1 -2.7381 12.2090 7.9220 50 1 -3.7187 12.7029 5.7195 51 1 -3.8459 10.9430 4.0038 52 1 -3.0696 6.6335 5.3830 53 1 -1.4547 7.4096 5.2990 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000579855196.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:13:49 Heat of formation + Delta-G solvation = -16.686893 kcal Electronic energy + Delta-G solvation = -29372.518476 eV Core-core repulsion = 25436.092671 eV Total energy + Delta-G solvation = -3936.425805 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.45759 -40.63388 -38.90972 -38.13727 -36.08112 -34.46802 -33.53175 -32.84476 -32.11610 -30.72400 -29.70300 -29.32167 -27.45413 -25.59576 -24.04288 -23.77963 -23.42257 -21.82925 -21.75755 -21.24982 -20.92796 -18.94783 -18.48238 -17.71450 -17.54898 -17.20290 -16.71640 -16.60532 -16.37180 -16.04294 -15.74380 -15.51869 -15.27402 -14.87417 -14.78986 -14.76172 -14.37363 -14.23195 -14.14751 -13.80107 -13.68289 -13.52840 -13.32737 -13.15571 -12.98142 -12.88798 -12.59171 -12.48870 -12.34341 -12.33040 -12.21845 -11.98553 -11.90771 -11.67310 -11.53560 -11.43182 -11.18840 -10.80559 -10.58959 -10.43554 -10.06567 -9.87131 -8.92884 -8.89593 -8.24512 -6.19400 0.42492 0.47223 1.38542 1.41721 1.50617 1.71501 2.13023 2.40458 2.68970 2.98764 3.06644 3.49167 3.53902 3.66339 3.80194 3.98128 4.01288 4.06491 4.18755 4.25747 4.29240 4.32734 4.33773 4.36095 4.48127 4.52390 4.53217 4.54820 4.55647 4.58397 4.66374 4.72833 4.84853 4.85706 4.87564 4.95107 5.03762 5.09117 5.12033 5.18801 5.18854 5.23605 5.34331 5.48429 5.49944 5.53380 5.64709 5.77238 5.82046 5.90810 6.06108 6.31990 6.52555 6.76495 6.79011 6.85870 7.35571 7.42520 8.93531 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.024158 B = 0.001636 C = 0.001633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.776417 B =17109.418110 C =17137.495033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.152 4.152 3 C 0.204 3.796 4 H 0.034 0.966 5 C -0.515 4.515 6 H 0.021 0.979 7 C 0.011 3.989 8 N -0.946 5.946 9 Si 0.931 3.069 10 H -0.275 1.275 11 H -0.293 1.293 12 H -0.215 1.215 13 N -0.681 5.681 14 C 0.042 3.958 15 C 0.514 3.486 16 O -0.573 6.573 17 N -0.716 5.716 18 C 0.134 3.866 19 C -0.089 4.089 20 H 0.107 0.893 21 C -0.127 4.127 22 C 0.043 3.957 23 N -0.477 5.477 24 C 0.086 3.914 25 C -0.184 4.184 26 C -0.106 4.106 27 C -0.153 4.153 28 C -0.104 4.104 29 C -0.148 4.148 30 C 0.038 3.962 31 H 0.060 0.940 32 H 0.063 0.937 33 H 0.057 0.943 34 H 0.052 0.948 35 H 0.045 0.955 36 H 0.263 0.737 37 H 0.336 0.664 38 H 0.104 0.896 39 H 0.084 0.916 40 H 0.416 0.584 41 H 0.063 0.937 42 H 0.051 0.949 43 H 0.067 0.933 44 H 0.097 0.903 45 H 0.045 0.955 46 H 0.094 0.906 47 H 0.132 0.868 48 H 0.136 0.864 49 H 0.139 0.861 50 H 0.143 0.857 51 H 0.131 0.869 52 H 0.096 0.904 53 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.201 20.355 10.124 34.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.191 4.191 3 C 0.095 3.905 4 H 0.051 0.949 5 C -0.554 4.554 6 H 0.039 0.961 7 C -0.186 4.186 8 N -0.586 5.586 9 Si 0.754 3.246 10 H -0.201 1.201 11 H -0.219 1.219 12 H -0.137 1.137 13 N -0.312 5.312 14 C -0.091 4.091 15 C 0.301 3.699 16 O -0.451 6.451 17 N -0.370 5.370 18 C 0.009 3.991 19 C -0.108 4.108 20 H 0.125 0.875 21 C -0.165 4.165 22 C -0.082 4.082 23 N -0.193 5.193 24 C -0.011 4.011 25 C -0.204 4.204 26 C -0.124 4.124 27 C -0.172 4.172 28 C -0.122 4.122 29 C -0.168 4.168 30 C -0.089 4.089 31 H 0.079 0.921 32 H 0.082 0.918 33 H 0.076 0.924 34 H 0.070 0.930 35 H 0.064 0.936 36 H 0.072 0.928 37 H 0.154 0.846 38 H 0.122 0.878 39 H 0.101 0.899 40 H 0.253 0.747 41 H 0.081 0.919 42 H 0.069 0.931 43 H 0.086 0.914 44 H 0.115 0.885 45 H 0.064 0.936 46 H 0.113 0.887 47 H 0.150 0.850 48 H 0.154 0.846 49 H 0.157 0.843 50 H 0.161 0.839 51 H 0.148 0.852 52 H 0.114 0.886 53 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -25.663 20.479 10.523 34.478 hybrid contribution 0.491 -0.624 -0.720 1.072 sum -25.172 19.855 9.803 33.525 Atomic orbital electron populations 1.21847 0.94513 1.02261 1.01696 1.22507 0.96237 0.99216 1.01145 1.19338 0.93251 0.90177 0.87748 0.94861 1.21305 0.92164 1.36333 1.05550 0.96082 1.25874 0.96021 0.94325 1.02409 1.70194 1.15223 1.42428 1.30727 0.86204 0.81892 0.77684 0.78808 1.20093 1.21901 1.13748 1.60025 1.39485 1.21508 1.10227 1.21997 0.95354 0.96925 0.94793 1.20972 0.78948 0.79764 0.90259 1.90688 1.49531 1.66340 1.38587 1.45760 1.36978 1.39652 1.14605 1.21232 0.97300 0.94096 0.86447 1.22200 0.98077 0.94894 0.95618 0.87483 1.22548 1.00929 0.92807 1.00198 1.22957 0.96242 0.97710 0.91281 1.61915 1.49469 1.02943 1.04928 1.19290 0.97086 0.91982 0.92787 1.21565 1.02880 1.01220 0.94784 1.21322 0.98431 0.93217 0.99458 1.21415 1.00582 0.97374 0.97820 1.21346 0.98054 0.99678 0.93150 1.21005 1.02678 0.92079 1.01048 1.23397 0.98762 0.89789 0.96949 0.92133 0.91826 0.92394 0.92964 0.93576 0.92799 0.84575 0.87757 0.89881 0.74679 0.91853 0.93073 0.91411 0.88452 0.93616 0.88721 0.84991 0.84583 0.84306 0.83929 0.85153 0.88581 0.92163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.19 9.11 71.98 0.66 -3.54 16 2 C -0.15 -6.04 4.48 30.59 0.14 -5.90 16 3 C 0.20 9.12 1.75 44.17 0.08 9.20 16 4 H 0.03 1.41 6.50 -2.39 -0.02 1.40 16 5 C -0.52 -30.07 9.30 25.60 0.24 -29.83 16 6 H 0.02 1.43 8.06 -2.91 -0.02 1.41 16 7 C 0.01 0.63 5.26 84.65 0.44 1.08 16 8 N -0.95 -60.13 13.96 21.45 0.30 -59.83 16 9 Si 0.93 42.16 25.82 68.60 1.77 43.93 16 10 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 11 H -0.29 -13.36 7.11 99.48 0.71 -12.66 16 12 H -0.21 -8.36 5.46 99.48 0.54 -7.82 16 13 N -0.68 -27.96 5.61 -499.46 -2.80 -30.76 16 14 C 0.04 1.23 5.63 85.55 0.48 1.71 16 15 C 0.51 15.17 7.88 87.65 0.69 15.86 16 16 O -0.57 -22.90 16.31 -3.04 -0.05 -22.95 16 17 N -0.72 -13.60 5.40 -463.07 -2.50 -16.10 16 18 C 0.13 2.35 5.00 86.38 0.43 2.78 16 19 C -0.09 -1.04 3.13 -9.59 -0.03 -1.07 16 20 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 21 C -0.13 -1.40 6.19 31.47 0.19 -1.21 16 22 C 0.04 0.54 6.12 86.45 0.53 1.07 16 23 N -0.48 -7.09 5.33 -682.80 -3.64 -10.73 16 24 C 0.09 1.42 5.35 38.21 0.20 1.62 16 25 C -0.18 -2.94 8.84 22.40 0.20 -2.74 16 26 C -0.11 -1.49 10.04 22.25 0.22 -1.26 16 27 C -0.15 -1.95 10.04 22.29 0.22 -1.72 16 28 C -0.10 -1.32 10.04 22.25 0.22 -1.10 16 29 C -0.15 -2.20 9.36 22.40 0.21 -1.99 16 30 C 0.04 0.51 4.77 86.65 0.41 0.92 16 31 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 32 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.06 1.50 6.43 -2.39 -0.02 1.49 16 34 H 0.05 2.19 4.50 -2.39 -0.01 2.18 16 35 H 0.05 1.93 8.04 -2.39 -0.02 1.91 16 36 H 0.26 15.62 8.31 -92.71 -0.77 14.85 16 37 H 0.34 13.65 7.65 -89.70 -0.69 12.97 16 38 H 0.10 2.94 8.01 -2.39 -0.02 2.92 16 39 H 0.08 1.92 6.53 -2.39 -0.02 1.90 16 40 H 0.42 5.02 8.33 -92.71 -0.77 4.25 16 41 H 0.06 1.22 8.14 -2.38 -0.02 1.20 16 42 H 0.05 1.10 8.08 -2.39 -0.02 1.08 16 43 H 0.07 0.92 7.80 -2.39 -0.02 0.90 16 44 H 0.10 0.75 8.14 -2.38 -0.02 0.73 16 45 H 0.05 0.66 7.75 -2.39 -0.02 0.64 16 46 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 47 H 0.13 1.89 5.77 -2.91 -0.02 1.87 16 48 H 0.14 1.40 8.06 -2.91 -0.02 1.38 16 49 H 0.14 1.15 8.06 -2.91 -0.02 1.12 16 50 H 0.14 1.14 8.06 -2.91 -0.02 1.11 16 51 H 0.13 1.63 8.00 -2.91 -0.02 1.61 16 52 H 0.10 1.19 8.14 -2.38 -0.02 1.17 16 53 H 0.06 0.87 6.21 -2.39 -0.01 0.85 16 Total: -1.00 -78.30 411.49 -2.08 -80.38 By element: Atomic # 1 Polarization: 32.87 SS G_CDS: -0.71 Total: 32.16 kcal Atomic # 6 Polarization: -21.66 SS G_CDS: 5.55 Total: -16.11 kcal Atomic # 7 Polarization: -108.77 SS G_CDS: -8.64 Total: -117.41 kcal Atomic # 8 Polarization: -22.90 SS G_CDS: -0.05 Total: -22.95 kcal Atomic # 14 Polarization: 42.16 SS G_CDS: 1.77 Total: 43.93 kcal Total: -78.30 -2.08 -80.38 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000579855196.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.694 kcal (2) G-P(sol) polarization free energy of solvation -78.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds