Wall clock time and date at job start Wed Apr 1 2020 03:48:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47107 * 2 1 4 4 C 1.50700 * 109.47209 * 119.99799 * 2 1 3 5 5 H 1.08004 * 119.99711 * 122.34465 * 4 2 1 6 6 C 1.37871 * 120.00197 * 302.07940 * 4 2 1 7 7 N 1.31518 * 119.99879 * 353.79971 * 6 4 2 8 8 Si 1.86803 * 120.00147 * 173.80337 * 6 4 2 9 9 H 1.48497 * 109.47022 * 94.98684 * 8 6 4 10 10 H 1.48499 * 109.47169 * 214.98423 * 8 6 4 11 11 H 1.48498 * 109.47068 * 334.98674 * 8 6 4 12 12 C 1.53001 * 109.47151 * 239.99948 * 2 1 3 13 13 N 1.46499 * 109.47247 * 60.00063 * 12 2 1 14 14 C 1.34775 * 120.00084 * 180.02562 * 13 12 2 15 15 O 1.21279 * 119.99877 * 0.02562 * 14 13 12 16 16 C 1.50704 * 119.99678 * 179.97438 * 14 13 12 17 17 H 1.09004 * 109.49814 * 59.92848 * 16 14 13 18 18 C 1.53115 * 109.50785 * 299.80527 * 16 14 13 19 19 C 1.53117 * 109.16240 * 182.40586 * 18 16 14 20 20 C 1.53040 * 109.27716 * 57.65112 * 19 18 16 21 21 N 1.46844 * 109.52537 * 300.82070 * 20 19 18 22 22 C 1.46895 * 110.99954 * 185.83588 * 21 20 19 23 23 C 1.50708 * 109.46863 * 65.79291 * 22 21 20 24 24 C 1.38665 * 120.41539 * 89.99921 * 23 22 21 25 25 C 1.38632 * 118.42007 * 180.02562 * 24 23 22 26 26 C 1.38224 * 119.15855 * 0.02562 * 25 24 23 27 27 N 1.31861 * 120.76593 * 359.97438 * 26 25 24 28 28 C 1.31880 * 121.72321 * 359.71107 * 27 26 25 29 29 C 1.46848 * 111.19680 * 61.74434 * 21 20 19 30 30 H 1.09008 * 109.46881 * 300.00126 * 1 2 3 31 31 H 1.09003 * 109.47156 * 59.99853 * 1 2 3 32 32 H 1.08997 * 109.47389 * 180.02562 * 1 2 3 33 33 H 1.09008 * 109.47022 * 174.13128 * 3 2 1 34 34 H 1.08993 * 109.47444 * 294.12663 * 3 2 1 35 35 H 1.08994 * 109.47375 * 54.13257 * 3 2 1 36 36 H 0.97005 * 119.99788 * 180.02562 * 7 6 4 37 37 H 1.09006 * 109.47267 * 180.02562 * 12 2 1 38 38 H 1.09002 * 109.46950 * 299.99701 * 12 2 1 39 39 H 0.97002 * 119.99725 * 359.97438 * 13 12 2 40 40 H 1.09008 * 109.51785 * 302.31339 * 18 16 14 41 41 H 1.08998 * 109.52472 * 62.49659 * 18 16 14 42 42 H 1.08993 * 109.50063 * 297.71238 * 19 18 16 43 43 H 1.09002 * 109.53350 * 177.61337 * 19 18 16 44 44 H 1.09001 * 109.46314 * 180.80041 * 20 19 18 45 45 H 1.08999 * 109.45895 * 60.83888 * 20 19 18 46 46 H 1.09002 * 109.47004 * 185.78809 * 22 21 20 47 47 H 1.08997 * 109.47448 * 305.79323 * 22 21 20 48 48 H 1.08000 * 120.79786 * 359.97438 * 24 23 22 49 49 H 1.07998 * 120.42225 * 180.02562 * 25 24 23 50 50 H 1.08005 * 119.62006 * 180.02562 * 26 25 24 51 51 H 1.08002 * 119.62337 * 180.31096 * 28 27 26 52 52 H 1.08997 * 109.46386 * 178.24343 * 29 21 20 53 53 H 1.09003 * 109.46558 * 58.26955 * 29 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6841 -1.5659 1.1318 6 6 1.6643 -0.2649 2.4822 7 7 0.9766 0.8492 2.6078 8 14 2.1424 -1.2435 3.9999 9 1 3.4024 -0.6970 4.5645 10 1 1.0618 -1.1443 5.0136 11 1 2.3431 -2.6671 3.6280 12 6 2.0400 -0.7213 -1.2492 13 7 1.5517 -0.0307 -2.4454 14 6 1.8769 -0.4915 -3.6695 15 8 2.5733 -1.4781 -3.7807 16 6 1.3740 0.2187 -4.9000 17 1 1.7360 1.2468 -4.9001 18 6 -0.1571 0.2149 -4.9027 19 6 -0.6591 0.8847 -6.1848 20 6 -0.0908 0.1443 -7.3976 21 7 1.3764 0.1768 -7.3492 22 6 1.9563 -0.4037 -8.5677 23 6 1.6118 0.4642 -9.7506 24 6 2.4506 1.5020 -10.1279 25 6 2.0933 2.2746 -11.2221 26 6 0.9209 1.9872 -11.8955 27 7 0.1473 0.9921 -11.5083 28 6 0.4587 0.2327 -10.4760 29 6 1.8834 -0.5025 -6.1500 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 3.1250 1.4443 0.1051 34 1 1.7651 1.9251 -0.9378 35 1 1.5934 1.9857 0.8327 36 1 0.7180 1.1628 3.4886 37 1 3.1300 -0.7217 -1.2490 38 1 1.6767 -1.7490 -1.2492 39 1 0.9937 0.7578 -2.3564 40 1 -0.5188 -0.8127 -4.8628 41 1 -0.5243 0.7651 -4.0364 42 1 -0.3298 1.9235 -6.2055 43 1 -1.7481 0.8475 -6.2131 44 1 -0.4349 0.6274 -8.3121 45 1 -0.4318 -0.8909 -7.3835 46 1 3.0397 -0.4613 -8.4626 47 1 1.5523 -1.4043 -8.7213 48 1 3.3602 1.7041 -9.5819 49 1 2.7230 3.0907 -11.5443 50 1 0.6356 2.5841 -12.7492 51 1 -0.1974 -0.5766 -10.1914 52 1 2.9732 -0.4890 -6.1583 53 1 1.5331 -1.5347 -6.1418 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590916053.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:48:37 Heat of formation + Delta-G solvation = -30.479703 kcal Electronic energy + Delta-G solvation = -30337.292300 eV Core-core repulsion = 26400.268394 eV Total energy + Delta-G solvation = -3937.023906 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.46718 -40.97628 -39.33634 -38.04261 -35.51551 -34.91317 -33.24436 -32.72383 -32.23988 -31.73140 -27.68729 -27.56026 -27.43877 -26.91420 -24.95667 -24.34496 -24.06133 -22.66074 -21.49491 -20.66754 -20.53645 -18.48450 -17.92901 -17.70858 -17.26891 -17.07457 -16.73836 -16.42461 -16.32045 -16.06344 -15.60767 -15.29330 -15.02080 -14.85947 -14.75421 -14.65721 -14.30479 -14.09444 -13.93177 -13.90656 -13.79207 -13.58743 -13.22920 -13.06511 -12.80920 -12.69585 -12.59698 -12.48038 -12.41934 -12.23787 -12.13950 -11.87558 -11.65606 -11.47865 -11.44791 -11.24006 -10.76970 -10.69841 -10.60137 -10.38137 -10.35696 -9.96039 -9.91394 -9.33784 -8.03187 -6.17050 0.17029 0.39895 1.41135 1.44895 1.53423 1.69561 2.24737 2.47476 2.78484 3.15998 3.20777 3.54538 3.62471 3.73950 3.84259 3.88404 3.98310 4.11654 4.15924 4.19191 4.22019 4.35429 4.45740 4.50150 4.51723 4.57860 4.60150 4.70431 4.71485 4.76089 4.78471 4.89804 4.93349 4.95099 5.00558 5.06229 5.08568 5.12130 5.18208 5.20122 5.24935 5.36240 5.37981 5.41594 5.60993 5.67117 5.68890 5.80636 5.98808 6.05632 6.14716 6.21762 6.43211 6.68529 6.86745 7.05433 7.33248 7.49980 8.96263 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.030968 B = 0.001837 C = 0.001816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.932740 B =15241.814589 C =15417.762044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.050 3.950 3 C -0.118 4.118 4 C -0.529 4.529 5 H 0.043 0.957 6 C 0.029 3.971 7 N -0.897 5.897 8 Si 0.943 3.057 9 H -0.280 1.280 10 H -0.282 1.282 11 H -0.276 1.276 12 C 0.148 3.852 13 N -0.708 5.708 14 C 0.510 3.490 15 O -0.593 6.593 16 C -0.092 4.092 17 H 0.118 0.882 18 C -0.110 4.110 19 C -0.107 4.107 20 C 0.049 3.951 21 N -0.532 5.532 22 C 0.098 3.902 23 C -0.129 4.129 24 C -0.063 4.063 25 C -0.169 4.169 26 C 0.083 3.917 27 N -0.514 5.514 28 C 0.092 3.908 29 C 0.086 3.914 30 H 0.059 0.941 31 H 0.040 0.960 32 H 0.018 0.982 33 H 0.015 0.985 34 H 0.037 0.963 35 H 0.062 0.938 36 H 0.260 0.740 37 H 0.036 0.964 38 H 0.037 0.963 39 H 0.409 0.591 40 H 0.056 0.944 41 H 0.080 0.920 42 H 0.076 0.924 43 H 0.086 0.914 44 H 0.081 0.919 45 H 0.035 0.965 46 H 0.093 0.907 47 H 0.050 0.950 48 H 0.148 0.852 49 H 0.160 0.840 50 H 0.175 0.825 51 H 0.156 0.844 52 H 0.075 0.925 53 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.147 5.044 -26.745 27.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.050 3.950 3 C -0.176 4.176 4 C -0.567 4.567 5 H 0.061 0.939 6 C -0.171 4.171 7 N -0.536 5.536 8 Si 0.770 3.230 9 H -0.206 1.206 10 H -0.207 1.207 11 H -0.201 1.201 12 C 0.024 3.976 13 N -0.359 5.359 14 C 0.297 3.703 15 O -0.474 6.474 16 C -0.113 4.113 17 H 0.136 0.864 18 C -0.148 4.148 19 C -0.145 4.145 20 C -0.079 4.079 21 N -0.256 5.256 22 C -0.029 4.029 23 C -0.132 4.132 24 C -0.089 4.089 25 C -0.189 4.189 26 C -0.074 4.074 27 N -0.223 5.223 28 C -0.065 4.065 29 C -0.042 4.042 30 H 0.078 0.922 31 H 0.058 0.942 32 H 0.038 0.962 33 H 0.035 0.965 34 H 0.056 0.944 35 H 0.081 0.919 36 H 0.069 0.931 37 H 0.055 0.945 38 H 0.055 0.945 39 H 0.246 0.754 40 H 0.075 0.925 41 H 0.099 0.901 42 H 0.095 0.905 43 H 0.104 0.896 44 H 0.099 0.901 45 H 0.053 0.947 46 H 0.111 0.889 47 H 0.068 0.932 48 H 0.166 0.834 49 H 0.178 0.822 50 H 0.192 0.808 51 H 0.173 0.827 52 H 0.094 0.906 53 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -2.376 4.779 -27.088 27.609 hybrid contribution 0.723 -1.103 1.819 2.247 sum -1.653 3.676 -25.269 25.589 Atomic orbital electron populations 1.21637 0.97007 0.98673 1.00361 1.18366 0.93299 0.93047 0.90335 1.21680 0.98258 0.97909 0.99720 1.21256 1.30049 1.13825 0.91617 0.93865 1.25440 0.95240 0.95578 1.00872 1.69937 1.39156 1.20924 1.23560 0.85786 0.77789 0.79325 0.80146 1.20647 1.20745 1.20127 1.21233 0.96921 0.95022 0.84395 1.46142 1.52605 1.31874 1.05289 1.21172 0.79460 0.84119 0.85545 1.90647 1.40555 1.28629 1.87580 1.21257 0.98087 1.01417 0.90559 0.86418 1.21588 0.91670 1.01590 0.99981 1.21537 1.00811 1.00047 0.92078 1.22251 0.86797 0.99202 0.99639 1.61910 1.07525 1.55194 1.00999 1.20952 1.00946 0.94560 0.86487 1.20742 0.96482 0.98363 0.97590 1.21773 0.99401 0.92525 0.95229 1.22459 0.98585 1.01438 0.96387 1.23213 0.91097 0.93766 0.99326 1.67699 1.33315 1.06318 1.14988 1.22804 0.94789 0.97887 0.91059 1.21645 0.99919 0.94606 0.88055 0.92245 0.94157 0.96242 0.96534 0.94438 0.91915 0.93054 0.94508 0.94487 0.75411 0.92488 0.90128 0.90511 0.89552 0.90092 0.94721 0.88911 0.93167 0.83436 0.82197 0.80836 0.82697 0.90644 0.95303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.16 8.06 71.98 0.58 -4.58 16 2 C 0.05 2.29 0.50 -52.93 -0.03 2.26 16 3 C -0.12 -5.17 8.08 71.98 0.58 -4.58 16 4 C -0.53 -27.84 8.01 25.60 0.20 -27.63 16 5 H 0.04 2.33 7.75 -2.91 -0.02 2.31 16 6 C 0.03 1.51 5.13 84.65 0.43 1.94 16 7 N -0.90 -47.51 9.46 21.45 0.20 -47.30 16 8 Si 0.94 42.50 29.54 68.60 2.03 44.53 16 9 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 10 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 11 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 12 C 0.15 6.23 4.50 86.38 0.39 6.61 16 13 N -0.71 -23.55 4.81 -463.05 -2.23 -25.78 16 14 C 0.51 16.42 7.16 87.66 0.63 17.05 16 15 O -0.59 -23.97 15.98 -3.03 -0.05 -24.02 16 16 C -0.09 -2.09 2.69 -11.49 -0.03 -2.12 16 17 H 0.12 2.39 8.14 -2.38 -0.02 2.37 16 18 C -0.11 -2.11 5.16 30.67 0.16 -1.95 16 19 C -0.11 -1.64 6.09 30.65 0.19 -1.45 16 20 C 0.05 0.78 5.18 86.33 0.45 1.23 16 21 N -0.53 -9.37 4.65 -900.92 -4.19 -13.56 16 22 C 0.10 1.49 5.14 85.56 0.44 1.93 16 23 C -0.13 -1.94 4.89 -19.77 -0.10 -2.03 16 24 C -0.06 -0.82 9.86 22.47 0.22 -0.60 16 25 C -0.17 -1.89 10.11 22.36 0.23 -1.67 16 26 C 0.08 1.13 11.18 84.69 0.95 2.07 16 27 N -0.51 -9.44 10.36 -195.84 -2.03 -11.47 16 28 C 0.09 1.51 9.07 84.67 0.77 2.27 16 29 C 0.09 1.91 4.03 86.33 0.35 2.25 16 30 H 0.06 2.87 6.15 -2.38 -0.01 2.86 16 31 H 0.04 1.44 6.86 -2.39 -0.02 1.42 16 32 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.02 0.72 8.14 -2.38 -0.02 0.70 16 34 H 0.04 1.35 6.72 -2.39 -0.02 1.34 16 35 H 0.06 3.05 6.20 -2.39 -0.01 3.03 16 36 H 0.26 13.26 8.31 -92.70 -0.77 12.49 16 37 H 0.04 1.66 8.14 -2.38 -0.02 1.64 16 38 H 0.04 1.66 8.14 -2.39 -0.02 1.65 16 39 H 0.41 11.77 5.64 -92.71 -0.52 11.24 16 40 H 0.06 1.21 8.14 -2.38 -0.02 1.19 16 41 H 0.08 1.45 7.66 -2.39 -0.02 1.43 16 42 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 43 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 44 H 0.08 1.26 5.78 -2.39 -0.01 1.25 16 45 H 0.03 0.57 8.14 -2.39 -0.02 0.55 16 46 H 0.09 1.31 7.94 -2.39 -0.02 1.29 16 47 H 0.05 0.74 8.07 -2.39 -0.02 0.72 16 48 H 0.15 1.50 8.06 -2.91 -0.02 1.47 16 49 H 0.16 0.88 8.06 -2.91 -0.02 0.86 16 50 H 0.17 1.43 8.06 -2.91 -0.02 1.41 16 51 H 0.16 2.18 7.98 -2.91 -0.02 2.15 16 52 H 0.08 1.79 7.99 -2.39 -0.02 1.77 16 53 H 0.03 0.73 8.08 -2.39 -0.02 0.71 16 Total: -1.00 -63.50 409.54 0.51 -62.99 By element: Atomic # 1 Polarization: 23.24 SS G_CDS: 0.37 Total: 23.61 kcal Atomic # 6 Polarization: -15.40 SS G_CDS: 6.40 Total: -8.99 kcal Atomic # 7 Polarization: -89.87 SS G_CDS: -8.24 Total: -98.11 kcal Atomic # 8 Polarization: -23.97 SS G_CDS: -0.05 Total: -24.02 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 2.03 Total: 44.53 kcal Total: -63.50 0.51 -62.99 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590916053.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.508 kcal (2) G-P(sol) polarization free energy of solvation -63.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds