Wall clock time and date at job start Wed Apr 1 2020 04:04:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.47123 * 2 1 4 4 H 1.09000 * 109.84607 * 305.86627 * 3 2 1 5 5 C 1.54204 * 109.81174 * 184.99925 * 3 2 1 6 6 N 1.46436 * 109.11545 * 180.02562 * 5 3 2 7 7 C 1.46900 * 111.00159 * 215.41598 * 6 5 3 8 8 C 1.40118 * 114.90527 * 88.44104 * 6 5 3 9 9 C 1.40231 * 115.18358 * 150.22529 * 8 6 5 10 10 C 1.37558 * 120.86130 * 176.33585 * 9 8 6 11 11 C 1.38321 * 120.12270 * 359.97008 * 10 9 8 12 12 C 1.38059 * 119.50622 * 0.82143 * 11 10 9 13 13 C 1.38218 * 126.38770 * 327.95996 * 8 6 5 14 14 C 1.50308 * 121.11230 * 6.87524 * 13 8 6 15 15 N 1.45242 * 109.80576 * 66.72254 * 3 2 1 16 16 C 1.34772 * 121.32205 * 267.86779 * 15 3 2 17 17 O 1.21279 * 120.00142 * 0.02562 * 16 15 3 18 18 C 1.50699 * 119.99774 * 180.02562 * 16 15 3 19 19 H 1.09007 * 109.47038 * 39.99977 * 18 16 15 20 20 N 1.46906 * 109.47297 * 159.99537 * 18 16 15 21 21 C 1.52995 * 109.47303 * 279.99977 * 18 16 15 22 22 C 1.52998 * 109.47355 * 175.00050 * 21 18 16 23 23 C 1.50702 * 109.47259 * 179.97438 * 22 21 18 24 24 H 1.07996 * 119.99790 * 359.97438 * 23 22 21 25 25 C 1.37877 * 120.00083 * 180.02562 * 23 22 21 26 26 N 1.31515 * 119.99856 * 359.97438 * 25 23 22 27 27 Si 1.86797 * 120.00005 * 179.97438 * 25 23 22 28 28 H 1.48503 * 109.47203 * 89.99663 * 27 25 23 29 29 H 1.48505 * 109.46830 * 209.99486 * 27 25 23 30 30 H 1.48495 * 109.47109 * 329.99599 * 27 25 23 31 31 H 1.09004 * 109.47082 * 60.00386 * 1 2 3 32 32 H 1.09004 * 109.46781 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47263 * 299.99915 * 1 2 3 34 34 H 1.09002 * 109.47263 * 240.00085 * 2 1 3 35 35 H 1.08995 * 109.47525 * 119.99991 * 2 1 3 36 36 H 1.09004 * 109.52987 * 60.12810 * 5 3 2 37 37 H 1.09006 * 109.53090 * 299.91115 * 5 3 2 38 38 H 1.09000 * 109.47237 * 282.99024 * 7 6 5 39 39 H 1.08995 * 109.46696 * 42.98491 * 7 6 5 40 40 H 1.08999 * 109.47134 * 162.98726 * 7 6 5 41 41 H 1.08001 * 119.57164 * 356.36005 * 9 8 6 42 42 H 1.07997 * 119.93816 * 179.97438 * 10 9 8 43 43 H 1.08002 * 120.24239 * 180.80705 * 11 10 9 44 44 H 1.08005 * 119.73206 * 180.29745 * 12 11 10 45 45 H 1.08996 * 109.41325 * 71.69184 * 14 13 8 46 46 H 1.09007 * 109.41023 * 191.46538 * 14 13 8 47 47 H 1.00895 * 111.00026 * 296.05048 * 20 18 16 48 48 H 1.00902 * 110.99282 * 59.99767 * 20 18 16 49 49 H 1.09003 * 109.46904 * 295.00165 * 21 18 16 50 50 H 1.08998 * 109.47326 * 54.99645 * 21 18 16 51 51 H 1.09003 * 109.47208 * 299.99928 * 22 21 18 52 52 H 1.08998 * 109.47420 * 60.00060 * 22 21 18 53 53 H 0.97000 * 119.99956 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5970 1.9917 -0.8309 5 6 3.5768 1.4536 -0.1264 6 7 4.0483 2.8400 -0.1243 7 6 5.2066 3.0036 -1.0127 8 6 4.3100 3.3722 1.1452 9 6 5.3124 4.3519 1.1864 10 6 5.6121 5.0060 2.3588 11 6 4.9224 4.7027 3.5188 12 6 3.9447 3.7282 3.4934 13 6 3.6523 3.0552 2.3188 14 6 2.6398 1.9453 2.3662 15 7 1.6949 2.0865 1.2553 16 6 0.5509 2.7855 1.3928 17 8 -0.2145 2.8860 0.4574 18 6 0.2228 3.4423 2.7089 19 1 1.1280 3.8757 3.1343 20 7 -0.7724 4.5011 2.4931 21 6 -0.3443 2.3981 3.6726 22 6 -0.5608 3.0361 5.0462 23 6 -1.1199 2.0076 5.9953 24 1 -1.3029 0.9999 5.6529 25 6 -1.3988 2.3536 7.3006 26 7 -1.1763 3.5809 7.7174 27 14 -2.0925 1.0790 8.4768 28 1 -0.9766 0.3786 9.1622 29 1 -2.9492 1.7515 9.4863 30 1 -2.9030 0.0936 7.7170 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3634 0.5138 0.8900 34 1 1.8934 -0.5138 -0.8900 35 1 1.8934 -0.5138 0.8899 36 1 3.8692 0.9706 -1.0589 37 1 4.0156 0.9182 0.7157 38 1 6.0978 2.6095 -0.5242 39 1 5.0315 2.4608 -1.9416 40 1 5.3500 4.0617 -1.2317 41 1 5.8561 4.5965 0.2857 42 1 6.3874 5.7578 2.3736 43 1 5.1471 5.2242 4.4374 44 1 3.4006 3.4919 4.3959 45 1 3.1504 0.9855 2.2879 46 1 2.0975 1.9898 3.3108 47 1 -0.3985 5.2357 1.9112 48 1 -1.6214 4.1244 2.0989 49 1 -1.2956 2.0288 3.2895 50 1 0.3572 1.5688 3.7636 51 1 0.3905 3.4054 5.4294 52 1 -1.2623 3.8653 4.9553 53 1 -1.3721 3.8242 8.6358 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592218656.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:04:09 Heat of formation + Delta-G solvation = -18.531449 kcal Electronic energy + Delta-G solvation = -32536.782970 eV Core-core repulsion = 28600.277179 eV Total energy + Delta-G solvation = -3936.505791 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -42.17657 -40.51806 -38.33072 -37.00825 -36.82816 -34.92125 -34.35345 -32.20767 -31.94126 -31.19215 -29.81762 -28.10101 -27.50985 -26.65258 -25.53519 -24.04058 -22.69910 -22.61196 -21.77169 -21.50054 -19.98247 -18.63864 -18.39487 -18.02087 -17.49679 -17.06000 -16.93639 -16.47890 -16.27328 -15.91666 -15.58261 -15.50814 -15.30258 -14.93393 -14.85445 -14.54104 -14.33215 -14.18625 -14.13636 -13.79261 -13.63768 -13.44660 -13.34092 -13.02042 -12.95409 -12.76950 -12.64056 -12.53527 -12.42270 -12.31252 -12.20367 -12.15146 -11.83845 -11.72825 -11.62936 -11.52362 -11.21878 -10.95892 -10.77507 -10.48003 -9.78009 -9.68018 -9.61830 -8.59242 -8.12404 -6.22823 0.41916 0.49607 1.41892 1.43517 1.53409 1.55592 2.01183 2.45269 2.55379 2.85467 3.20531 3.45349 3.60190 3.76739 3.80678 3.85371 3.96471 3.98575 4.05811 4.15914 4.24294 4.28193 4.31253 4.36522 4.38493 4.49696 4.52902 4.57389 4.62003 4.66278 4.76022 4.78530 4.84422 4.91211 4.93293 4.96940 5.01072 5.10818 5.16696 5.21880 5.28339 5.39166 5.54020 5.57690 5.59913 5.69586 5.83304 5.85305 5.98441 6.06018 6.07153 6.30568 6.34098 6.36050 6.46439 6.94846 7.12831 7.45203 8.98767 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.010956 B = 0.003693 C = 0.003136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2555.022329 B = 7579.960975 C = 8927.014990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.124 4.124 3 C 0.141 3.859 4 H 0.073 0.927 5 C 0.054 3.946 6 N -0.514 5.514 7 C 0.026 3.974 8 C 0.133 3.867 9 C -0.186 4.186 10 C -0.090 4.090 11 C -0.160 4.160 12 C -0.093 4.093 13 C -0.154 4.154 14 C 0.141 3.859 15 N -0.586 5.586 16 C 0.497 3.503 17 O -0.573 6.573 18 C 0.087 3.913 19 H 0.094 0.906 20 N -0.817 5.817 21 C -0.078 4.078 22 C 0.044 3.956 23 C -0.542 4.542 24 H 0.055 0.945 25 C 0.004 3.996 26 N -0.928 5.928 27 Si 0.958 3.042 28 H -0.270 1.270 29 H -0.284 1.284 30 H -0.267 1.267 31 H 0.044 0.956 32 H 0.062 0.938 33 H 0.025 0.975 34 H 0.100 0.900 35 H 0.072 0.928 36 H 0.122 0.878 37 H 0.067 0.933 38 H 0.051 0.949 39 H 0.093 0.907 40 H 0.079 0.921 41 H 0.147 0.853 42 H 0.144 0.856 43 H 0.133 0.867 44 H 0.119 0.881 45 H 0.108 0.892 46 H 0.085 0.915 47 H 0.342 0.658 48 H 0.345 0.655 49 H 0.041 0.959 50 H 0.065 0.935 51 H -0.007 1.007 52 H 0.003 0.997 53 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.529 -4.438 -18.520 26.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.163 4.163 3 C 0.037 3.963 4 H 0.092 0.908 5 C -0.072 4.072 6 N -0.226 5.226 7 C -0.120 4.120 8 C 0.033 3.967 9 C -0.206 4.206 10 C -0.109 4.109 11 C -0.179 4.179 12 C -0.112 4.112 13 C -0.158 4.158 14 C 0.018 3.982 15 N -0.317 5.317 16 C 0.285 3.715 17 O -0.452 6.452 18 C -0.028 4.028 19 H 0.112 0.888 20 N -0.346 5.346 21 C -0.116 4.116 22 C 0.007 3.993 23 C -0.580 4.580 24 H 0.073 0.927 25 C -0.194 4.194 26 N -0.569 5.569 27 Si 0.783 3.217 28 H -0.195 1.195 29 H -0.210 1.210 30 H -0.192 1.192 31 H 0.063 0.937 32 H 0.081 0.919 33 H 0.044 0.956 34 H 0.119 0.881 35 H 0.090 0.910 36 H 0.140 0.860 37 H 0.085 0.915 38 H 0.070 0.930 39 H 0.111 0.889 40 H 0.098 0.902 41 H 0.165 0.835 42 H 0.162 0.838 43 H 0.151 0.849 44 H 0.137 0.863 45 H 0.126 0.874 46 H 0.103 0.897 47 H 0.155 0.845 48 H 0.158 0.842 49 H 0.059 0.941 50 H 0.084 0.916 51 H 0.011 0.989 52 H 0.021 0.979 53 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 17.750 -3.971 -18.371 25.852 hybrid contribution -0.206 -0.662 0.332 0.769 sum 17.544 -4.633 -18.039 25.587 Atomic orbital electron populations 1.21636 0.96515 1.00987 1.00677 1.21858 0.95565 0.94989 1.03892 1.21419 0.94789 0.93668 0.86468 0.90845 1.22822 0.93207 0.86626 1.04591 1.57533 1.35248 1.21083 1.08714 1.22700 0.89495 1.03736 0.96020 1.18942 0.93587 0.96355 0.87785 1.21788 0.99606 0.99303 0.99952 1.21210 0.98982 0.98632 0.92062 1.21255 0.97874 0.99219 0.99590 1.21127 0.97366 0.95702 0.97009 1.19523 1.01435 1.01927 0.92931 1.20605 0.89505 0.97699 0.90367 1.47722 1.19634 1.51219 1.13082 1.22075 0.80561 0.77805 0.91072 1.90613 1.49530 1.62454 1.42648 1.21568 0.96754 0.93089 0.91415 0.88785 1.58988 1.07164 1.12099 1.56318 1.21391 0.99154 0.95872 0.95220 1.18774 0.95264 0.95040 0.90201 1.21683 1.42674 0.97409 0.96216 0.92668 1.25868 0.96083 0.97212 1.00187 1.70111 1.49737 1.19673 1.17334 0.85563 0.78571 0.79074 0.78526 1.19521 1.21007 1.19156 0.93717 0.91894 0.95596 0.88149 0.90979 0.86043 0.91518 0.93017 0.88868 0.90240 0.83525 0.83821 0.84933 0.86275 0.87439 0.89698 0.84505 0.84192 0.94063 0.91619 0.98857 0.97885 0.92957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.50 8.86 71.98 0.64 -2.86 16 2 C -0.12 -2.30 5.63 30.60 0.17 -2.13 16 3 C 0.14 3.05 2.28 45.64 0.10 3.16 16 4 H 0.07 1.97 7.48 -2.39 -0.02 1.95 16 5 C 0.05 0.83 4.73 86.80 0.41 1.24 16 6 N -0.51 -9.51 4.41 -717.78 -3.17 -12.67 16 7 C 0.03 0.29 8.35 127.69 1.07 1.36 16 8 C 0.13 2.94 5.82 38.30 0.22 3.16 16 9 C -0.19 -3.59 8.75 22.59 0.20 -3.39 16 10 C -0.09 -1.74 10.01 22.13 0.22 -1.52 16 11 C -0.16 -3.62 10.07 22.25 0.22 -3.40 16 12 C -0.09 -2.40 9.35 22.29 0.21 -2.19 16 13 C -0.15 -3.81 5.22 -19.93 -0.10 -3.92 16 14 C 0.14 3.49 4.67 85.51 0.40 3.89 16 15 N -0.59 -15.77 2.11 -803.43 -1.70 -17.46 16 16 C 0.50 16.86 5.66 87.66 0.50 17.36 16 17 O -0.57 -21.92 14.54 -3.03 -0.04 -21.97 16 18 C 0.09 3.22 2.32 44.17 0.10 3.32 16 19 H 0.09 3.51 6.77 -2.38 -0.02 3.49 16 20 N -0.82 -30.63 8.44 -171.79 -1.45 -32.08 16 21 C -0.08 -3.30 4.48 30.59 0.14 -3.17 16 22 C 0.04 2.36 4.86 29.85 0.15 2.50 16 23 C -0.54 -30.97 9.11 25.60 0.23 -30.74 16 24 H 0.06 3.04 7.74 -2.91 -0.02 3.02 16 25 C 0.00 0.26 5.46 84.65 0.46 0.72 16 26 N -0.93 -56.86 13.29 21.45 0.28 -56.58 16 27 Si 0.96 44.58 29.54 68.60 2.03 46.60 16 28 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 29 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 30 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 31 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.02 0.80 6.26 -2.39 -0.01 0.79 16 34 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 35 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.12 1.14 7.37 -2.38 -0.02 1.12 16 37 H 0.07 0.99 5.98 -2.38 -0.01 0.97 16 38 H 0.05 0.51 7.80 -2.39 -0.02 0.49 16 39 H 0.09 0.71 7.57 -2.39 -0.02 0.69 16 40 H 0.08 0.87 6.64 -2.39 -0.02 0.86 16 41 H 0.15 2.10 5.45 -2.91 -0.02 2.09 16 42 H 0.14 1.97 8.06 -2.91 -0.02 1.95 16 43 H 0.13 2.63 8.06 -2.91 -0.02 2.61 16 44 H 0.12 3.29 7.88 -2.91 -0.02 3.27 16 45 H 0.11 2.13 6.51 -2.39 -0.02 2.12 16 46 H 0.08 2.43 4.66 -2.38 -0.01 2.42 16 47 H 0.34 11.56 9.06 -89.70 -0.81 10.75 16 48 H 0.34 13.00 8.58 -89.69 -0.77 12.23 16 49 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 50 H 0.07 2.58 6.50 -2.39 -0.02 2.56 16 51 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 52 H 0.00 0.16 7.75 -2.39 -0.02 0.14 16 53 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 Total: -1.00 -72.11 402.58 0.64 -71.46 By element: Atomic # 1 Polarization: 39.95 SS G_CDS: -0.65 Total: 39.30 kcal Atomic # 6 Polarization: -21.95 SS G_CDS: 5.34 Total: -16.61 kcal Atomic # 7 Polarization: -112.77 SS G_CDS: -6.03 Total: -118.79 kcal Atomic # 8 Polarization: -21.92 SS G_CDS: -0.04 Total: -21.97 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.60 kcal Total: -72.11 0.64 -71.46 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592218656.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.933 kcal (2) G-P(sol) polarization free energy of solvation -72.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds