Wall clock time and date at job start Wed Apr 1 2020 04:04:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52998 * 109.46838 * 2 1 4 4 H 1.09002 * 109.80030 * 55.00303 * 3 2 1 5 5 C 1.54219 * 109.80425 * 175.82429 * 3 2 1 6 6 N 1.46435 * 108.97935 * 179.97438 * 5 3 2 7 7 C 1.46905 * 110.95827 * 144.45909 * 6 5 3 8 8 C 1.40119 * 115.06630 * 271.53009 * 6 5 3 9 9 C 1.40175 * 115.26003 * 208.51885 * 8 6 5 10 10 C 1.37562 * 120.86578 * 185.02313 * 9 8 6 11 11 C 1.38324 * 120.11286 * 359.91040 * 10 9 8 12 12 C 1.38061 * 119.52137 * 358.96196 * 11 10 9 13 13 C 1.38336 * 126.25205 * 31.86217 * 8 6 5 14 14 C 1.50266 * 121.05376 * 353.53552 * 13 8 6 15 15 N 1.45195 * 109.80786 * 294.17440 * 3 2 1 16 16 C 1.34784 * 121.39525 * 92.15788 * 15 3 2 17 17 O 1.21277 * 120.00030 * 0.02562 * 16 15 3 18 18 C 1.50699 * 119.99986 * 180.02562 * 16 15 3 19 19 H 1.09000 * 109.47377 * 39.99710 * 18 16 15 20 20 N 1.46895 * 109.47039 * 160.00499 * 18 16 15 21 21 C 1.53008 * 109.47147 * 280.00254 * 18 16 15 22 22 C 1.52995 * 109.46891 * 175.00119 * 21 18 16 23 23 C 1.50706 * 109.46715 * 179.97438 * 22 21 18 24 24 H 1.08005 * 119.99859 * 0.02562 * 23 22 21 25 25 C 1.37878 * 119.99812 * 179.97438 * 23 22 21 26 26 N 1.31514 * 120.00192 * 0.02562 * 25 23 22 27 27 Si 1.86804 * 119.99701 * 180.02562 * 25 23 22 28 28 H 1.48497 * 109.47030 * 60.00146 * 27 25 23 29 29 H 1.48501 * 109.46854 * 180.02562 * 27 25 23 30 30 H 1.48501 * 109.47235 * 299.99947 * 27 25 23 31 31 H 1.08994 * 109.46892 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47205 * 59.99950 * 1 2 3 33 33 H 1.08998 * 109.46720 * 300.00247 * 1 2 3 34 34 H 1.09000 * 109.47205 * 120.00050 * 2 1 3 35 35 H 1.08993 * 109.46926 * 240.00176 * 2 1 3 36 36 H 1.08993 * 109.55255 * 299.85756 * 5 3 2 37 37 H 1.09002 * 109.55434 * 60.15540 * 5 3 2 38 38 H 1.09005 * 109.47037 * 197.18221 * 7 6 5 39 39 H 1.08991 * 109.47392 * 317.18490 * 7 6 5 40 40 H 1.08999 * 109.47245 * 77.18721 * 7 6 5 41 41 H 1.08002 * 119.56925 * 5.04739 * 9 8 6 42 42 H 1.07994 * 119.94795 * 179.89432 * 10 9 8 43 43 H 1.08004 * 120.24091 * 178.94250 * 11 10 9 44 44 H 1.07998 * 119.72363 * 180.23853 * 12 11 10 45 45 H 1.08999 * 109.39221 * 288.13106 * 14 13 8 46 46 H 1.09003 * 109.39692 * 168.42463 * 14 13 8 47 47 H 1.00893 * 111.00367 * 60.00045 * 20 18 16 48 48 H 1.00907 * 110.99700 * 183.95935 * 20 18 16 49 49 H 1.09001 * 109.46661 * 295.00202 * 21 18 16 50 50 H 1.09002 * 109.46776 * 54.99906 * 21 18 16 51 51 H 1.08998 * 109.47072 * 299.99334 * 22 21 18 52 52 H 1.08996 * 109.47188 * 60.00371 * 22 21 18 53 53 H 0.96998 * 119.99792 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6085 1.9867 0.8401 5 6 3.5785 1.4528 0.1057 6 7 4.0468 2.8403 0.1035 7 6 5.2149 3.0020 0.9795 8 6 4.2916 3.3822 -1.1652 9 6 5.2712 4.3839 -1.2089 10 6 5.5313 5.0664 -2.3747 11 6 4.8248 4.7680 -3.5258 12 6 3.8740 3.7673 -3.5004 13 6 3.6202 3.0670 -2.3329 14 6 2.6073 1.9576 -2.3693 15 7 1.6766 2.0928 -1.2463 16 6 0.5312 2.7933 -1.3647 17 8 -0.2207 2.8909 -0.4181 18 6 0.1847 3.4553 -2.6734 19 1 0.4544 2.7947 -3.4974 20 7 -1.2579 3.7288 -2.7170 21 6 0.9571 4.7700 -2.8002 22 6 0.7023 5.3802 -4.1799 23 6 1.4625 6.6754 -4.3045 24 1 2.0673 7.0278 -3.4819 25 6 1.3869 7.4099 -5.4688 26 7 0.6508 6.9806 -6.4705 27 14 2.3298 9.0151 -5.6235 28 1 3.7822 8.7538 -5.4579 29 1 2.0824 9.6074 -6.9626 30 1 1.8739 9.9603 -4.5728 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 0.5139 0.8900 34 1 1.8934 -0.5138 0.8900 35 1 1.8934 -0.5138 -0.8900 36 1 3.8839 0.9657 1.0316 37 1 4.0062 0.9226 -0.7453 38 1 5.3572 4.0592 1.2038 39 1 5.0527 2.4525 1.9066 40 1 6.1017 2.6146 0.4778 41 1 5.8294 4.6228 -0.3157 42 1 6.2881 5.8366 -2.3911 43 1 5.0153 5.3142 -4.4379 44 1 3.3232 3.5290 -4.3983 45 1 3.1192 0.9977 -2.3009 46 1 2.0527 2.0044 -3.3065 47 1 -1.5331 4.3397 -1.9626 48 1 -1.5261 4.1138 -3.6103 49 1 0.6227 5.4636 -2.0287 50 1 2.0232 4.5782 -2.6790 51 1 1.0367 4.6866 -4.9513 52 1 -0.3638 5.5720 -4.3010 53 1 0.5979 7.4972 -7.2898 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592218657.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:04:14 Heat of formation + Delta-G solvation = -13.232582 kcal Electronic energy + Delta-G solvation = -33238.552470 eV Core-core repulsion = 29302.276455 eV Total energy + Delta-G solvation = -3936.276015 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -42.15831 -40.35729 -38.41048 -36.94515 -36.91068 -34.90529 -34.32609 -32.19630 -31.62184 -31.12165 -29.77381 -28.08548 -27.42018 -26.66958 -25.62168 -24.00182 -22.67970 -22.54536 -21.89108 -21.39421 -19.83117 -18.81837 -18.31718 -17.94044 -17.69212 -16.94477 -16.51093 -16.23626 -16.08697 -15.88931 -15.63014 -15.34616 -15.21029 -15.04879 -14.86531 -14.58934 -14.41587 -14.19165 -14.02516 -13.83663 -13.60612 -13.42879 -13.34124 -12.98303 -12.91882 -12.81781 -12.66201 -12.57930 -12.51015 -12.31317 -12.20564 -12.10723 -11.76627 -11.75228 -11.61680 -11.50371 -11.27422 -10.70648 -10.60693 -10.51572 -9.73880 -9.67669 -9.44819 -8.51441 -8.16831 -6.24733 0.47759 0.57994 1.38665 1.40008 1.47658 1.67436 2.02552 2.41660 2.61202 2.90062 3.17028 3.50716 3.73182 3.79544 3.87537 3.89047 3.98911 4.04989 4.10988 4.18329 4.30171 4.30604 4.34876 4.41554 4.44700 4.56457 4.59120 4.61211 4.66934 4.71532 4.75842 4.83592 4.89542 4.93620 4.96617 5.02721 5.07380 5.13705 5.17208 5.23115 5.33012 5.47047 5.51817 5.60209 5.66345 5.70092 5.79423 5.85198 5.88699 6.06262 6.11956 6.27592 6.40526 6.42686 6.46135 6.87733 7.25721 7.42909 8.93779 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.011086 B = 0.004663 C = 0.003559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2525.086148 B = 6003.896163 C = 7864.515938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.122 4.122 3 C 0.142 3.858 4 H 0.069 0.931 5 C 0.053 3.947 6 N -0.514 5.514 7 C 0.026 3.974 8 C 0.135 3.865 9 C -0.188 4.188 10 C -0.095 4.095 11 C -0.159 4.159 12 C -0.071 4.071 13 C -0.152 4.152 14 C 0.146 3.854 15 N -0.589 5.589 16 C 0.535 3.465 17 O -0.564 6.564 18 C 0.081 3.919 19 H 0.101 0.899 20 N -0.828 5.828 21 C -0.131 4.131 22 C 0.043 3.957 23 C -0.524 4.524 24 H 0.045 0.955 25 C 0.013 3.987 26 N -0.926 5.926 27 Si 0.946 3.054 28 H -0.265 1.265 29 H -0.283 1.283 30 H -0.277 1.277 31 H 0.064 0.936 32 H 0.028 0.972 33 H 0.039 0.961 34 H 0.099 0.901 35 H 0.078 0.922 36 H 0.122 0.878 37 H 0.072 0.928 38 H 0.073 0.927 39 H 0.095 0.905 40 H 0.052 0.948 41 H 0.145 0.855 42 H 0.133 0.867 43 H 0.114 0.886 44 H 0.118 0.882 45 H 0.116 0.884 46 H 0.087 0.913 47 H 0.341 0.659 48 H 0.350 0.650 49 H 0.023 0.977 50 H 0.085 0.915 51 H 0.003 0.997 52 H -0.006 1.006 53 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.137 -15.637 12.688 23.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.160 4.160 3 C 0.038 3.962 4 H 0.087 0.913 5 C -0.073 4.073 6 N -0.226 5.226 7 C -0.119 4.119 8 C 0.036 3.964 9 C -0.209 4.209 10 C -0.113 4.113 11 C -0.178 4.178 12 C -0.090 4.090 13 C -0.156 4.156 14 C 0.024 3.976 15 N -0.321 5.321 16 C 0.323 3.677 17 O -0.442 6.442 18 C -0.034 4.034 19 H 0.119 0.881 20 N -0.359 5.359 21 C -0.170 4.170 22 C 0.006 3.994 23 C -0.562 4.562 24 H 0.063 0.937 25 C -0.185 4.185 26 N -0.566 5.566 27 Si 0.772 3.228 28 H -0.189 1.189 29 H -0.209 1.209 30 H -0.202 1.202 31 H 0.083 0.917 32 H 0.047 0.953 33 H 0.058 0.942 34 H 0.117 0.883 35 H 0.096 0.904 36 H 0.140 0.860 37 H 0.090 0.910 38 H 0.091 0.909 39 H 0.114 0.886 40 H 0.071 0.929 41 H 0.162 0.838 42 H 0.151 0.849 43 H 0.132 0.868 44 H 0.136 0.864 45 H 0.134 0.866 46 H 0.105 0.895 47 H 0.153 0.847 48 H 0.165 0.835 49 H 0.042 0.958 50 H 0.104 0.896 51 H 0.021 0.979 52 H 0.012 0.988 53 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 11.203 -16.151 13.430 23.806 hybrid contribution 0.726 2.285 -1.094 2.636 sum 11.929 -13.865 12.336 22.062 Atomic orbital electron populations 1.21631 0.96457 1.00950 1.00730 1.21844 0.95559 0.94538 1.04084 1.21413 0.94564 0.93781 0.86471 0.91309 1.22866 0.93250 0.86357 1.04811 1.57563 1.34943 1.21194 1.08938 1.22678 0.89443 1.03490 0.96322 1.18898 0.93672 0.96025 0.87842 1.21684 1.00627 0.99131 0.99412 1.21111 0.99065 0.98656 0.92488 1.21106 0.98511 0.99001 0.99228 1.20908 0.96122 0.94737 0.97223 1.19497 1.01432 1.02034 0.92656 1.20528 0.89548 0.97597 0.89953 1.47584 1.19700 1.51468 1.13326 1.20490 0.80458 0.77158 0.89566 1.90599 1.50481 1.61763 1.41382 1.21407 0.89847 0.96880 0.95311 0.88083 1.58788 1.12844 1.55142 1.09141 1.22343 1.02008 0.94235 0.98412 1.18836 0.95048 0.94471 0.91073 1.21356 1.28386 1.06967 0.99487 0.93687 1.25689 0.96329 1.00866 0.95631 1.70044 1.41088 1.40237 1.05243 0.85786 0.79799 0.80171 0.77060 1.18936 1.20863 1.20248 0.91667 0.95295 0.94219 0.88292 0.90356 0.85964 0.90971 0.90866 0.88640 0.92932 0.83765 0.84867 0.86828 0.86440 0.86574 0.89505 0.84659 0.83493 0.95841 0.89640 0.97883 0.98802 0.92905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.24 8.83 71.99 0.64 -2.60 16 2 C -0.12 -2.05 5.64 30.60 0.17 -1.87 16 3 C 0.14 3.09 2.28 45.65 0.10 3.19 16 4 H 0.07 1.93 7.48 -2.39 -0.02 1.91 16 5 C 0.05 0.85 4.74 86.80 0.41 1.26 16 6 N -0.51 -10.85 4.40 -717.70 -3.15 -14.00 16 7 C 0.03 0.37 8.37 127.69 1.07 1.43 16 8 C 0.14 3.49 5.81 38.31 0.22 3.71 16 9 C -0.19 -4.74 8.79 22.58 0.20 -4.54 16 10 C -0.09 -2.61 10.02 22.13 0.22 -2.39 16 11 C -0.16 -5.06 10.07 22.25 0.22 -4.84 16 12 C -0.07 -2.21 7.62 22.29 0.17 -2.04 16 13 C -0.15 -4.16 3.97 -19.92 -0.08 -4.24 16 14 C 0.15 3.48 4.82 85.50 0.41 3.89 16 15 N -0.59 -15.95 2.10 -803.67 -1.69 -17.64 16 16 C 0.53 18.79 5.64 87.66 0.49 19.29 16 17 O -0.56 -22.95 14.58 -3.02 -0.04 -23.00 16 18 C 0.08 2.96 2.49 44.17 0.11 3.07 16 19 H 0.10 3.49 6.42 -2.39 -0.02 3.48 16 20 N -0.83 -30.92 8.94 -171.80 -1.54 -32.46 16 21 C -0.13 -5.54 4.72 30.60 0.14 -5.39 16 22 C 0.04 2.15 4.74 29.85 0.14 2.29 16 23 C -0.52 -28.99 9.11 25.60 0.23 -28.76 16 24 H 0.04 2.51 7.74 -2.91 -0.02 2.49 16 25 C 0.01 0.74 5.46 84.65 0.46 1.20 16 26 N -0.93 -54.32 13.29 21.45 0.28 -54.04 16 27 Si 0.95 43.86 29.54 68.60 2.03 45.89 16 28 H -0.26 -11.68 7.11 99.48 0.71 -10.98 16 29 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 30 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 31 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.03 0.84 6.27 -2.39 -0.01 0.82 16 33 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.12 1.18 7.37 -2.39 -0.02 1.16 16 37 H 0.07 1.01 5.97 -2.39 -0.01 1.00 16 38 H 0.07 1.10 6.63 -2.38 -0.02 1.09 16 39 H 0.10 0.92 7.57 -2.39 -0.02 0.90 16 40 H 0.05 0.65 7.83 -2.39 -0.02 0.63 16 41 H 0.14 2.90 5.48 -2.91 -0.02 2.88 16 42 H 0.13 3.09 8.06 -2.91 -0.02 3.07 16 43 H 0.11 3.72 8.06 -2.91 -0.02 3.69 16 44 H 0.12 3.80 7.88 -2.91 -0.02 3.78 16 45 H 0.12 1.98 6.50 -2.39 -0.02 1.96 16 46 H 0.09 2.15 5.72 -2.39 -0.01 2.13 16 47 H 0.34 13.18 8.58 -89.70 -0.77 12.41 16 48 H 0.35 13.16 7.55 -89.69 -0.68 12.49 16 49 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 50 H 0.09 3.51 3.47 -2.39 -0.01 3.50 16 51 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 52 H -0.01 -0.34 6.87 -2.39 -0.02 -0.35 16 53 H 0.26 14.64 8.31 -92.71 -0.77 13.87 16 Total: -1.00 -69.94 395.86 0.73 -69.21 By element: Atomic # 1 Polarization: 43.89 SS G_CDS: -0.51 Total: 43.38 kcal Atomic # 6 Polarization: -22.70 SS G_CDS: 5.35 Total: -17.35 kcal Atomic # 7 Polarization: -112.04 SS G_CDS: -6.09 Total: -118.14 kcal Atomic # 8 Polarization: -22.95 SS G_CDS: -0.04 Total: -23.00 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.89 kcal Total: -69.94 0.73 -69.21 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592218657.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.977 kcal (2) G-P(sol) polarization free energy of solvation -69.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds