Wall clock time and date at job start Wed Apr 1 2020 04:04:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.46906 * 2 1 4 4 H 1.09002 * 108.96744 * 310.80426 * 3 2 1 5 5 C 1.51967 * 108.90944 * 192.15204 * 3 2 1 6 6 N 1.46961 * 110.39049 * 176.76252 * 5 3 2 7 7 C 1.46893 * 111.00060 * 213.30710 * 6 5 3 8 8 C 1.39645 * 110.52144 * 89.69441 * 6 5 3 9 9 C 1.39143 * 119.77657 * 106.68686 * 8 6 5 10 10 C 1.38067 * 119.82076 * 181.53109 * 9 8 6 11 11 C 1.38304 * 120.34966 * 359.97438 * 10 9 8 12 12 C 1.38445 * 119.99877 * 359.50043 * 11 10 9 13 13 C 1.37760 * 119.68545 * 0.15893 * 12 11 10 14 14 C 1.51474 * 120.59026 * 180.88455 * 13 12 11 15 15 N 1.45965 * 109.04771 * 69.72789 * 3 2 1 16 16 C 1.34774 * 119.82737 * 3.65259 * 15 3 2 17 17 O 1.21279 * 120.00732 * 355.59070 * 16 15 3 18 18 C 1.50707 * 119.99804 * 175.58719 * 16 15 3 19 19 H 1.08997 * 109.47073 * 320.00319 * 18 16 15 20 20 N 1.46901 * 109.47050 * 199.99781 * 18 16 15 21 21 C 1.53004 * 109.46943 * 80.00163 * 18 16 15 22 22 C 1.52996 * 109.46901 * 184.99863 * 21 18 16 23 23 C 1.50706 * 109.46958 * 179.97438 * 22 21 18 24 24 H 1.07993 * 119.99744 * 359.97438 * 23 22 21 25 25 C 1.37876 * 120.00034 * 180.02562 * 23 22 21 26 26 N 1.31514 * 119.99807 * 359.97438 * 25 23 22 27 27 Si 1.86797 * 119.99957 * 179.97438 * 25 23 22 28 28 H 1.48495 * 109.47367 * 359.97438 * 27 25 23 29 29 H 1.48510 * 109.47060 * 119.99906 * 27 25 23 30 30 H 1.48498 * 109.46973 * 239.99540 * 27 25 23 31 31 H 1.09006 * 109.47273 * 194.04321 * 1 2 3 32 32 H 1.09003 * 109.47417 * 314.03793 * 1 2 3 33 33 H 1.08998 * 109.47619 * 74.04232 * 1 2 3 34 34 H 1.08998 * 109.47105 * 239.99855 * 2 1 3 35 35 H 1.09002 * 109.47280 * 119.99561 * 2 1 3 36 36 H 1.08997 * 109.39943 * 56.42034 * 5 3 2 37 37 H 1.08997 * 109.19737 * 296.98313 * 5 3 2 38 38 H 1.08999 * 109.47307 * 292.70568 * 7 6 5 39 39 H 1.08996 * 109.47356 * 52.71261 * 7 6 5 40 40 H 1.09002 * 109.47261 * 172.71016 * 7 6 5 41 41 H 1.07997 * 120.08772 * 1.56388 * 9 8 6 42 42 H 1.08002 * 119.83024 * 179.97438 * 10 9 8 43 43 H 1.08003 * 120.00456 * 179.50813 * 11 10 9 44 44 H 1.08002 * 120.15810 * 180.15725 * 12 11 10 45 45 H 1.09006 * 109.70527 * 125.96625 * 14 13 12 46 46 H 1.08999 * 109.73896 * 5.36547 * 14 13 12 47 47 H 1.00906 * 110.99741 * 176.04642 * 20 18 16 48 48 H 1.00895 * 111.00447 * 300.00303 * 20 18 16 49 49 H 1.09001 * 109.46996 * 65.00270 * 21 18 16 50 50 H 1.08993 * 109.46814 * 305.00108 * 21 18 16 51 51 H 1.08998 * 109.47542 * 300.00260 * 22 21 18 52 52 H 1.09001 * 109.46963 * 60.00387 * 22 21 18 53 53 H 0.97000 * 120.00064 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5229 2.0011 -0.7803 5 6 3.5292 1.4385 -0.3026 6 7 4.0383 2.8145 -0.3868 7 6 5.1214 2.9155 -1.3740 8 6 4.4619 3.2573 0.8680 9 6 5.8222 3.3760 1.1359 10 6 6.2427 3.7834 2.3863 11 6 5.3190 4.0747 3.3736 12 6 3.9645 3.9683 3.1075 13 6 3.5441 3.5686 1.8581 14 6 2.0671 3.4644 1.5385 15 7 1.7480 2.0510 1.2943 16 6 1.1878 1.3113 2.2717 17 8 0.8541 0.1665 2.0503 18 6 0.9760 1.9066 3.6399 19 1 1.8375 2.5186 3.9071 20 7 0.8174 0.8277 4.6241 21 6 -0.2831 2.7758 3.6285 22 6 -0.4297 3.4787 4.9795 23 6 -1.6696 4.3353 4.9681 24 1 -2.2905 4.3747 4.0854 25 6 -2.0106 5.0695 6.0842 26 7 -1.2540 5.0219 7.1589 27 14 -3.5470 6.1318 6.0698 28 1 -4.2189 6.0127 4.7509 29 1 -4.4719 5.6790 7.1398 30 1 -3.1713 7.5488 6.3072 31 1 -0.3634 -0.9970 0.2494 32 1 -0.3634 0.7144 0.7388 33 1 -0.3634 0.2825 -0.9880 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 3.7045 0.9303 -1.2509 37 1 4.0547 0.9072 0.4909 38 1 5.9893 2.3596 -1.0193 39 1 4.7869 2.4995 -2.3243 40 1 5.3918 3.9626 -1.5109 41 1 6.5470 3.1505 0.3677 42 1 7.2984 3.8751 2.5946 43 1 5.6543 4.3852 4.3522 44 1 3.2410 4.1976 3.8759 45 1 1.8413 4.0517 0.6484 46 1 1.4814 3.8333 2.3805 47 1 0.7383 1.1997 5.5588 48 1 0.0246 0.2459 4.3983 49 1 -1.1561 2.1483 3.4488 50 1 -0.2026 3.5215 2.8377 51 1 -0.5101 2.7330 5.7704 52 1 0.4433 4.1062 5.1592 53 1 -1.4941 5.5381 7.9443 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592218658.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:04:19 Heat of formation + Delta-G solvation = 21.483721 kcal Electronic energy + Delta-G solvation = -32611.407809 eV Core-core repulsion = 28676.637206 eV Total energy + Delta-G solvation = -3934.770603 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -42.31637 -40.71335 -38.23924 -37.22649 -36.66647 -35.08653 -34.25346 -32.14108 -31.70881 -31.05622 -29.80710 -28.15773 -27.19915 -26.57172 -25.75677 -23.97477 -22.98988 -22.56825 -21.85288 -21.56171 -20.21404 -18.69460 -18.45014 -17.97784 -17.25805 -16.71200 -16.57710 -16.38791 -16.30985 -16.15740 -15.94361 -15.40697 -15.21082 -14.92430 -14.75808 -14.73105 -14.57673 -14.17372 -13.96169 -13.76861 -13.60299 -13.42283 -13.32988 -13.07669 -12.94422 -12.86239 -12.71370 -12.57626 -12.52667 -12.43201 -12.10366 -12.02683 -11.89362 -11.76251 -11.55191 -11.39492 -11.22781 -10.55877 -10.36255 -9.97255 -9.82830 -9.58920 -9.39831 -8.94432 -8.20671 -6.30755 0.35464 0.41027 1.38485 1.40328 1.51849 1.62469 1.99279 2.40245 2.64792 2.93250 3.13052 3.51786 3.73677 3.76810 3.85227 3.90747 4.03643 4.09609 4.11506 4.13160 4.24225 4.30078 4.33697 4.37898 4.51027 4.52886 4.56445 4.58722 4.62795 4.69333 4.74116 4.82863 4.87823 4.93920 4.98596 5.00761 5.07098 5.09197 5.13098 5.30928 5.37583 5.46919 5.49763 5.53300 5.62629 5.65329 5.78475 5.81562 5.83441 6.00730 6.07872 6.21824 6.32312 6.43213 6.48681 6.84239 7.26425 7.38353 8.90109 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.011014 B = 0.003631 C = 0.003087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2541.539557 B = 7710.500946 C = 9068.439908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.114 4.114 3 C 0.150 3.850 4 H 0.081 0.919 5 C 0.056 3.944 6 N -0.504 5.504 7 C 0.019 3.981 8 C 0.103 3.897 9 C -0.172 4.172 10 C -0.100 4.100 11 C -0.143 4.143 12 C -0.103 4.103 13 C -0.124 4.124 14 C 0.152 3.848 15 N -0.594 5.594 16 C 0.518 3.482 17 O -0.529 6.529 18 C 0.079 3.921 19 H 0.094 0.906 20 N -0.828 5.828 21 C -0.122 4.122 22 C 0.034 3.966 23 C -0.542 4.542 24 H 0.053 0.947 25 C 0.008 3.992 26 N -0.925 5.925 27 Si 0.956 3.044 28 H -0.266 1.266 29 H -0.280 1.280 30 H -0.277 1.277 31 H 0.041 0.959 32 H 0.036 0.964 33 H 0.042 0.958 34 H 0.070 0.930 35 H 0.079 0.921 36 H 0.115 0.885 37 H 0.034 0.966 38 H 0.047 0.953 39 H 0.091 0.909 40 H 0.077 0.923 41 H 0.148 0.852 42 H 0.146 0.854 43 H 0.136 0.864 44 H 0.119 0.881 45 H 0.098 0.902 46 H 0.087 0.913 47 H 0.350 0.650 48 H 0.344 0.656 49 H 0.045 0.955 50 H 0.063 0.937 51 H 0.001 0.999 52 H 0.000 1.000 53 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.004 -4.567 -17.534 24.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.151 4.151 3 C 0.047 3.953 4 H 0.099 0.901 5 C -0.071 4.071 6 N -0.221 5.221 7 C -0.127 4.127 8 C 0.006 3.994 9 C -0.192 4.192 10 C -0.118 4.118 11 C -0.161 4.161 12 C -0.123 4.123 13 C -0.127 4.127 14 C 0.030 3.970 15 N -0.326 5.326 16 C 0.307 3.693 17 O -0.407 6.407 18 C -0.036 4.036 19 H 0.112 0.888 20 N -0.359 5.359 21 C -0.162 4.162 22 C -0.003 4.003 23 C -0.580 4.580 24 H 0.072 0.928 25 C -0.191 4.191 26 N -0.565 5.565 27 Si 0.781 3.219 28 H -0.190 1.190 29 H -0.206 1.206 30 H -0.203 1.203 31 H 0.060 0.940 32 H 0.055 0.945 33 H 0.061 0.939 34 H 0.088 0.912 35 H 0.097 0.903 36 H 0.133 0.867 37 H 0.052 0.948 38 H 0.065 0.935 39 H 0.110 0.890 40 H 0.095 0.905 41 H 0.166 0.834 42 H 0.164 0.836 43 H 0.154 0.846 44 H 0.137 0.863 45 H 0.116 0.884 46 H 0.105 0.895 47 H 0.165 0.835 48 H 0.157 0.843 49 H 0.063 0.937 50 H 0.082 0.918 51 H 0.019 0.981 52 H 0.019 0.981 53 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 16.146 -5.096 -17.983 24.699 hybrid contribution -1.256 0.882 1.178 1.935 sum 14.890 -4.214 -16.805 22.845 Atomic orbital electron populations 1.21696 0.95785 1.01010 0.98747 1.22051 0.96533 0.94317 1.02238 1.21000 0.95080 0.95048 0.84221 0.90110 1.22426 0.94711 0.87151 1.02767 1.59186 1.35698 1.21948 1.05261 1.22678 0.91992 1.03233 0.94803 1.18817 0.92258 0.98621 0.89654 1.21790 0.94933 1.03894 0.98590 1.21319 1.00603 0.97334 0.92591 1.21404 0.92644 1.01593 1.00507 1.21093 0.96958 0.98614 0.95587 1.19975 0.95606 1.03013 0.94074 1.20824 0.91511 0.81460 1.03203 1.47676 1.60923 1.10858 1.13160 1.20509 0.76861 0.85875 0.86041 1.90702 1.50051 1.18710 1.81259 1.21454 0.98956 0.92442 0.90758 0.88789 1.58759 1.50117 1.21708 1.05287 1.22193 0.95849 0.98214 0.99911 1.18926 0.95500 0.94163 0.91703 1.21618 1.10011 1.27074 0.99321 0.92824 1.25818 0.99885 0.98136 0.95214 1.70065 1.39779 1.42526 1.04135 0.85532 0.79488 0.78571 0.78279 1.19033 1.20572 1.20278 0.93961 0.94498 0.93932 0.91201 0.90262 0.86690 0.94759 0.93469 0.88997 0.90470 0.83429 0.83629 0.84636 0.86306 0.88352 0.89456 0.83549 0.84291 0.93659 0.91830 0.98063 0.98120 0.92770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.14 8.31 71.98 0.60 -2.54 16 2 C -0.11 -2.77 4.86 30.59 0.15 -2.62 16 3 C 0.15 3.46 2.70 44.75 0.12 3.58 16 4 H 0.08 1.79 8.09 -2.39 -0.02 1.77 16 5 C 0.06 1.06 4.78 85.95 0.41 1.47 16 6 N -0.50 -9.51 4.39 -722.09 -3.17 -12.67 16 7 C 0.02 0.24 8.45 127.69 1.08 1.32 16 8 C 0.10 2.32 4.98 38.19 0.19 2.51 16 9 C -0.17 -3.28 9.01 22.45 0.20 -3.08 16 10 C -0.10 -1.90 10.02 22.24 0.22 -1.67 16 11 C -0.14 -3.21 10.06 22.33 0.22 -2.98 16 12 C -0.10 -2.74 9.06 22.21 0.20 -2.54 16 13 C -0.12 -3.22 5.43 -19.66 -0.11 -3.33 16 14 C 0.15 4.12 5.04 85.80 0.43 4.55 16 15 N -0.59 -16.50 2.63 -802.73 -2.11 -18.61 16 16 C 0.52 17.12 5.81 87.66 0.51 17.63 16 17 O -0.53 -18.75 9.36 -3.03 -0.03 -18.78 16 18 C 0.08 2.78 2.36 44.17 0.10 2.88 16 19 H 0.09 3.31 5.90 -2.39 -0.01 3.30 16 20 N -0.83 -29.31 8.94 -171.79 -1.53 -30.84 16 21 C -0.12 -4.87 4.40 30.59 0.13 -4.74 16 22 C 0.03 1.69 4.74 29.85 0.14 1.83 16 23 C -0.54 -29.83 9.11 25.60 0.23 -29.60 16 24 H 0.05 2.90 7.74 -2.91 -0.02 2.88 16 25 C 0.01 0.45 5.46 84.65 0.46 0.91 16 26 N -0.93 -54.14 13.29 21.45 0.28 -53.86 16 27 Si 0.96 43.51 29.54 68.60 2.03 45.54 16 28 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 29 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 30 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 31 H 0.04 1.19 8.14 -2.38 -0.02 1.17 16 32 H 0.04 1.19 5.56 -2.39 -0.01 1.18 16 33 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.07 1.32 8.03 -2.39 -0.02 1.30 16 35 H 0.08 2.40 5.71 -35.49 -0.20 2.20 16 36 H 0.12 1.52 7.49 -2.39 -0.02 1.50 16 37 H 0.03 0.79 7.75 -2.39 -0.02 0.77 16 38 H 0.05 0.50 6.33 -2.39 -0.02 0.48 16 39 H 0.09 0.81 7.86 -2.39 -0.02 0.79 16 40 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 41 H 0.15 2.06 5.75 -2.91 -0.02 2.04 16 42 H 0.15 1.93 8.06 -2.91 -0.02 1.91 16 43 H 0.14 2.60 8.06 -2.91 -0.02 2.58 16 44 H 0.12 3.36 7.41 -2.91 -0.02 3.34 16 45 H 0.10 2.48 8.14 -2.38 -0.02 2.46 16 46 H 0.09 2.62 4.32 -2.39 -0.01 2.61 16 47 H 0.35 12.65 7.55 -89.69 -0.68 11.98 16 48 H 0.34 12.21 8.58 -89.70 -0.77 11.44 16 49 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 50 H 0.06 2.45 6.32 -2.39 -0.02 2.43 16 51 H 0.00 0.06 6.87 -2.39 -0.02 0.04 16 52 H 0.00 0.02 8.14 -2.39 -0.02 0.00 16 53 H 0.26 14.54 8.31 -92.71 -0.77 13.77 16 Total: -1.00 -64.42 394.59 0.08 -64.34 By element: Atomic # 1 Polarization: 42.00 SS G_CDS: -0.70 Total: 41.30 kcal Atomic # 6 Polarization: -21.73 SS G_CDS: 5.31 Total: -16.42 kcal Atomic # 7 Polarization: -109.46 SS G_CDS: -6.53 Total: -115.99 kcal Atomic # 8 Polarization: -18.75 SS G_CDS: -0.03 Total: -18.78 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.54 kcal Total: -64.42 0.08 -64.34 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592218658.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.823 kcal (2) G-P(sol) polarization free energy of solvation -64.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.340 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds