Wall clock time and date at job start Wed Apr 1 2020 03:25:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47188 * 2 1 4 4 C 1.50700 * 109.47251 * 239.99852 * 2 1 3 5 5 O 1.21281 * 119.99880 * 352.70916 * 4 2 1 6 6 N 1.34773 * 120.00454 * 172.70480 * 4 2 1 7 7 C 1.47087 * 120.87751 * 4.59701 * 6 4 2 8 8 C 1.53702 * 108.27208 * 128.75421 * 7 6 4 9 9 N 1.46898 * 109.25684 * 54.08269 * 8 7 6 10 10 C 1.46898 * 110.99886 * 172.60362 * 9 8 7 11 11 C 1.50701 * 109.47306 * 294.30363 * 10 9 8 12 12 H 1.08000 * 120.00328 * 0.02562 * 11 10 9 13 13 C 1.37884 * 120.00083 * 179.97438 * 11 10 9 14 14 N 1.31514 * 119.99928 * 0.02562 * 13 11 10 15 15 Si 1.86802 * 119.99920 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.47209 * 0.02562 * 15 13 11 17 17 H 1.48494 * 109.47134 * 120.00362 * 15 13 11 18 18 H 1.48505 * 109.46896 * 240.00428 * 15 13 11 19 19 C 1.46888 * 111.27131 * 296.75545 * 9 8 7 20 20 C 1.47077 * 120.88566 * 184.87387 * 6 4 2 21 21 C 1.53003 * 109.47015 * 120.00084 * 2 1 3 22 22 H 1.09001 * 109.47005 * 173.74522 * 21 2 1 23 23 N 1.46898 * 109.46912 * 53.74569 * 21 2 1 24 24 C 1.50697 * 109.47189 * 293.74455 * 21 2 1 25 25 C 1.38237 * 119.99621 * 79.72104 * 24 21 2 26 26 C 1.38238 * 119.99683 * 180.34238 * 25 24 21 27 27 C 1.38240 * 120.00194 * 359.89626 * 26 25 24 28 28 C 1.38233 * 119.99892 * 0.08614 * 27 26 25 29 29 C 1.38235 * 120.00116 * 359.97438 * 28 27 26 30 30 H 1.09002 * 109.46872 * 305.04426 * 1 2 3 31 31 H 1.09004 * 109.46993 * 65.03310 * 1 2 3 32 32 H 1.08995 * 109.46898 * 185.03798 * 1 2 3 33 33 H 1.09001 * 109.47019 * 185.23656 * 3 2 1 34 34 H 1.08998 * 109.47406 * 305.23285 * 3 2 1 35 35 H 1.08997 * 109.46902 * 65.24172 * 3 2 1 36 36 H 1.08992 * 109.62952 * 248.52128 * 7 6 4 37 37 H 1.08994 * 109.62741 * 9.10461 * 7 6 4 38 38 H 1.09000 * 109.64790 * 294.07760 * 8 7 6 39 39 H 1.09000 * 109.41743 * 173.94644 * 8 7 6 40 40 H 1.08997 * 109.47162 * 54.29899 * 10 9 8 41 41 H 1.09000 * 109.47461 * 174.30170 * 10 9 8 42 42 H 0.96996 * 119.99818 * 180.02562 * 14 13 11 43 43 H 1.09002 * 109.49675 * 303.14536 * 19 9 8 44 44 H 1.08995 * 109.49447 * 183.06702 * 19 9 8 45 45 H 1.09001 * 109.63006 * 350.90244 * 20 6 4 46 46 H 1.09003 * 109.62848 * 111.47886 * 20 6 4 47 47 H 1.00904 * 110.99605 * 176.04497 * 23 21 2 48 48 H 1.00892 * 110.99911 * 299.99697 * 23 21 2 49 49 H 1.07997 * 120.00619 * 0.28401 * 25 24 21 50 50 H 1.08000 * 120.00038 * 180.02562 * 26 25 24 51 51 H 1.07997 * 120.00175 * 180.10919 * 27 26 25 52 52 H 1.08004 * 120.00059 * 180.02562 * 28 27 26 53 53 H 1.08002 * 120.00236 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2304 5 8 1.2523 -1.2854 -1.9596 6 7 3.3485 -0.7068 -1.5206 7 6 4.3230 -0.1027 -0.5993 8 6 5.4393 -1.1266 -0.3392 9 7 5.9945 -1.5747 -1.6233 10 6 7.1788 -2.4194 -1.4187 11 6 8.2841 -1.5958 -0.8096 12 1 8.1229 -0.5496 -0.5955 13 6 9.5010 -2.1782 -0.5248 14 7 9.6973 -3.4523 -0.7850 15 14 10.8714 -1.1571 0.2295 16 1 10.4005 0.2380 0.4224 17 1 11.2546 -1.7357 1.5424 18 1 12.0483 -1.1621 -0.6761 19 6 4.9823 -2.2729 -2.4268 20 6 3.8479 -1.3015 -2.7696 21 6 2.0400 -0.7213 1.2493 22 1 3.1243 -0.8193 1.1950 23 7 1.4310 -2.0558 1.3270 24 6 1.6681 0.0728 2.4748 25 6 0.3867 -0.0069 2.9874 26 6 0.0435 0.7270 4.1074 27 6 0.9822 1.5390 4.7162 28 6 2.2636 1.6183 4.2039 29 6 2.6065 0.8854 3.0831 30 1 -0.3633 0.5901 0.8414 31 1 -0.3633 0.4338 -0.9317 32 1 -0.3633 -1.0237 0.0902 33 1 3.1260 1.4439 -0.0938 34 1 1.6022 1.9827 -0.8394 35 1 1.7554 1.9285 0.9332 36 1 4.7440 0.7962 -1.0495 37 1 3.8308 0.1508 0.3396 38 1 5.0333 -1.9824 0.2001 39 1 6.2262 -0.6618 0.2549 40 1 6.9272 -3.2418 -0.7490 41 1 7.5097 -2.8196 -2.3771 42 1 10.5532 -3.8621 -0.5843 43 1 4.5826 -3.1128 -1.8586 44 1 5.4377 -2.6395 -3.3467 45 1 3.0414 -1.8410 -3.2664 46 1 4.2242 -0.5156 -3.4246 47 1 1.8005 -2.5769 2.1081 48 1 0.4254 -1.9919 1.3782 49 1 -0.3465 -0.6417 2.5123 50 1 -0.9574 0.6645 4.5082 51 1 0.7146 2.1109 5.5923 52 1 2.9972 2.2523 4.6797 53 1 3.6078 0.9471 2.6830 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601852276.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:25:11 Heat of formation + Delta-G solvation = -0.700731 kcal Electronic energy + Delta-G solvation = -32288.182652 eV Core-core repulsion = 28352.450059 eV Total energy + Delta-G solvation = -3935.732593 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -42.18181 -40.33758 -39.02976 -37.46881 -35.98278 -34.44178 -33.59636 -32.16366 -31.87399 -31.10479 -29.99228 -28.29354 -27.42194 -26.29734 -24.70301 -24.50778 -23.37833 -23.21420 -21.97630 -21.03615 -19.71170 -18.47964 -17.99980 -17.80618 -17.38962 -16.88728 -16.67434 -16.50982 -16.04802 -15.91121 -15.78108 -15.53644 -15.34913 -15.15502 -14.86675 -14.67354 -14.28775 -14.20810 -13.93482 -13.76116 -13.51674 -13.42109 -13.29393 -13.06673 -12.90556 -12.88781 -12.73347 -12.56941 -12.47452 -12.27574 -12.15870 -12.08633 -12.05511 -11.93019 -11.78640 -11.31078 -11.25466 -10.62501 -10.60465 -9.91404 -9.76787 -9.69781 -9.47608 -9.05461 -8.18953 -6.29385 0.41771 0.52233 1.43849 1.44989 1.58066 1.68699 2.00560 2.42115 2.87693 3.13415 3.22403 3.28990 3.43767 3.77623 3.83315 3.90702 3.96440 4.03316 4.07164 4.13625 4.20468 4.24785 4.25666 4.34078 4.41261 4.43239 4.54740 4.65815 4.70478 4.73280 4.76980 4.80344 4.88705 4.91728 4.92788 4.95183 5.01505 5.11101 5.16842 5.19877 5.22060 5.23722 5.31207 5.50276 5.59325 5.64463 5.65418 5.66583 6.03058 6.12447 6.13239 6.24664 6.47156 6.48672 6.56551 6.86829 7.21047 7.40704 8.92764 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.011220 B = 0.003371 C = 0.002792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2494.861266 B = 8304.366255 C =10027.854766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.060 4.060 3 C -0.162 4.162 4 C 0.535 3.465 5 O -0.579 6.579 6 N -0.608 5.608 7 C 0.105 3.895 8 C 0.051 3.949 9 N -0.534 5.534 10 C 0.208 3.792 11 C -0.518 4.518 12 H 0.072 0.928 13 C 0.000 4.000 14 N -0.937 5.937 15 Si 0.971 3.029 16 H -0.256 1.256 17 H -0.281 1.281 18 H -0.282 1.282 19 C 0.045 3.955 20 C 0.127 3.873 21 C 0.136 3.864 22 H 0.091 0.909 23 N -0.847 5.847 24 C -0.115 4.115 25 C -0.122 4.122 26 C -0.123 4.123 27 C -0.126 4.126 28 C -0.123 4.123 29 C -0.121 4.121 30 H 0.083 0.917 31 H 0.052 0.948 32 H 0.060 0.940 33 H 0.081 0.919 34 H 0.064 0.936 35 H 0.084 0.916 36 H 0.088 0.912 37 H 0.123 0.877 38 H 0.012 0.988 39 H 0.087 0.913 40 H -0.043 1.043 41 H 0.003 0.997 42 H 0.263 0.737 43 H 0.010 0.990 44 H 0.079 0.921 45 H 0.085 0.915 46 H 0.083 0.917 47 H 0.350 0.650 48 H 0.348 0.652 49 H 0.127 0.873 50 H 0.139 0.861 51 H 0.139 0.861 52 H 0.137 0.863 53 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.076 12.915 10.508 26.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.064 4.064 3 C -0.220 4.220 4 C 0.325 3.675 5 O -0.459 6.459 6 N -0.340 5.340 7 C -0.017 4.017 8 C -0.078 4.078 9 N -0.259 5.259 10 C 0.082 3.918 11 C -0.556 4.556 12 H 0.090 0.910 13 C -0.198 4.198 14 N -0.578 5.578 15 Si 0.795 3.205 16 H -0.180 1.180 17 H -0.207 1.207 18 H -0.208 1.208 19 C -0.084 4.084 20 C 0.004 3.996 21 C 0.025 3.975 22 H 0.109 0.891 23 N -0.379 5.379 24 C -0.118 4.118 25 C -0.141 4.141 26 C -0.141 4.141 27 C -0.144 4.144 28 C -0.141 4.141 29 C -0.139 4.139 30 H 0.101 0.899 31 H 0.071 0.929 32 H 0.079 0.921 33 H 0.100 0.900 34 H 0.083 0.917 35 H 0.103 0.897 36 H 0.107 0.893 37 H 0.140 0.860 38 H 0.030 0.970 39 H 0.106 0.894 40 H -0.025 1.025 41 H 0.021 0.979 42 H 0.072 0.928 43 H 0.029 0.971 44 H 0.097 0.903 45 H 0.104 0.896 46 H 0.101 0.899 47 H 0.164 0.836 48 H 0.164 0.836 49 H 0.145 0.855 50 H 0.157 0.843 51 H 0.157 0.843 52 H 0.155 0.845 53 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -19.904 12.737 9.129 25.333 hybrid contribution 0.561 -0.914 1.338 1.715 sum -19.343 11.823 10.468 24.970 Atomic orbital electron populations 1.21752 0.91641 1.02517 1.02564 1.20689 0.98377 0.96263 0.91048 1.22386 1.03102 0.92511 1.03970 1.20825 0.81075 0.79023 0.86609 1.90610 1.55966 1.46196 1.53094 1.48158 1.06343 1.58093 1.21441 1.22658 0.88485 0.95768 0.94819 1.22469 0.96906 0.97214 0.91204 1.62020 1.05925 1.40768 1.17200 1.19377 0.87749 0.90520 0.94129 1.21476 0.97116 0.96908 1.40140 0.91035 1.25955 1.01416 0.96065 0.96380 1.70111 1.25196 1.12908 1.49567 0.85311 0.78279 0.79228 0.77669 1.17964 1.20684 1.20830 1.22396 0.92883 0.94817 0.98284 1.21577 0.95137 0.96592 0.86334 1.20601 0.99488 0.87543 0.89912 0.89090 1.58938 1.11603 1.15368 1.51950 1.20548 0.94912 0.98948 0.97347 1.21115 0.95615 1.00357 0.96971 1.21387 1.00475 0.96636 0.95613 1.21473 0.93481 0.98972 1.00461 1.21422 0.97245 0.99340 0.96113 1.21277 0.99631 0.96567 0.96435 0.89857 0.92862 0.92139 0.90021 0.91700 0.89699 0.89343 0.85971 0.96953 0.89438 1.02541 0.97880 0.92795 0.97130 0.90258 0.89649 0.89890 0.83632 0.83553 0.85544 0.84349 0.84331 0.84514 0.85401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.54 6.45 71.98 0.46 -2.07 16 2 C -0.06 -1.30 0.35 -52.93 -0.02 -1.32 16 3 C -0.16 -2.87 7.68 71.98 0.55 -2.32 16 4 C 0.53 15.99 6.25 87.66 0.55 16.54 16 5 O -0.58 -21.28 15.46 -3.03 -0.05 -21.32 16 6 N -0.61 -18.21 2.99 -817.05 -2.44 -20.65 16 7 C 0.10 2.83 4.08 86.50 0.35 3.18 16 8 C 0.05 1.84 5.42 86.54 0.47 2.31 16 9 N -0.53 -22.63 4.62 -898.92 -4.15 -26.78 16 10 C 0.21 11.03 4.72 85.56 0.40 11.43 16 11 C -0.52 -28.31 8.41 25.60 0.22 -28.09 16 12 H 0.07 3.73 7.13 -2.91 -0.02 3.71 16 13 C 0.00 -0.02 5.46 84.66 0.46 0.44 16 14 N -0.94 -56.03 13.29 21.45 0.28 -55.75 16 15 Si 0.97 42.87 29.54 68.60 2.03 44.89 16 16 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16 17 H -0.28 -12.15 7.11 99.48 0.71 -11.45 16 18 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 19 C 0.05 1.72 5.62 86.38 0.49 2.20 16 20 C 0.13 4.07 6.61 86.35 0.57 4.64 16 21 C 0.14 2.75 2.09 44.17 0.09 2.84 16 22 H 0.09 2.09 4.94 -2.39 -0.01 2.08 16 23 N -0.85 -17.96 8.65 -171.80 -1.49 -19.45 16 24 C -0.12 -1.91 3.66 -19.87 -0.07 -1.98 16 25 C -0.12 -1.77 7.36 22.27 0.16 -1.60 16 26 C -0.12 -1.56 10.05 22.27 0.22 -1.33 16 27 C -0.13 -1.57 10.05 22.27 0.22 -1.35 16 28 C -0.12 -1.70 10.05 22.27 0.22 -1.48 16 29 C -0.12 -1.91 8.56 22.27 0.19 -1.72 16 30 H 0.08 1.29 5.98 -2.39 -0.01 1.28 16 31 H 0.05 1.17 8.06 -2.38 -0.02 1.15 16 32 H 0.06 1.29 6.31 -2.39 -0.02 1.27 16 33 H 0.08 1.42 4.23 -2.39 -0.01 1.41 16 34 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.08 1.29 6.20 -2.39 -0.01 1.28 16 36 H 0.09 2.23 7.90 -2.39 -0.02 2.21 16 37 H 0.12 2.66 2.79 -2.39 -0.01 2.65 16 38 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 39 H 0.09 3.29 6.67 -2.39 -0.02 3.27 16 40 H -0.04 -2.53 8.12 -2.39 -0.02 -2.55 16 41 H 0.00 0.18 7.97 -2.39 -0.02 0.16 16 42 H 0.26 14.80 8.31 -92.71 -0.77 14.03 16 43 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 44 H 0.08 2.96 7.99 -2.39 -0.02 2.94 16 45 H 0.09 2.81 7.04 -2.39 -0.02 2.79 16 46 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 47 H 0.35 6.79 9.06 -89.69 -0.81 5.97 16 48 H 0.35 6.37 5.28 -89.70 -0.47 5.90 16 49 H 0.13 1.60 5.81 -2.91 -0.02 1.58 16 50 H 0.14 1.19 8.06 -2.91 -0.02 1.16 16 51 H 0.14 1.15 8.06 -2.91 -0.02 1.13 16 52 H 0.14 1.43 8.06 -2.91 -0.02 1.41 16 53 H 0.13 1.89 8.04 -2.91 -0.02 1.86 16 Total: -1.00 -69.91 393.30 -0.61 -70.52 By element: Atomic # 1 Polarization: 28.54 SS G_CDS: -0.35 Total: 28.20 kcal Atomic # 6 Polarization: -5.22 SS G_CDS: 5.55 Total: 0.33 kcal Atomic # 7 Polarization: -114.83 SS G_CDS: -7.80 Total: -122.62 kcal Atomic # 8 Polarization: -21.28 SS G_CDS: -0.05 Total: -21.32 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 2.03 Total: 44.89 kcal Total: -69.91 -0.61 -70.52 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601852276.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.823 kcal (2) G-P(sol) polarization free energy of solvation -69.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds