Wall clock time and date at job start Wed Apr 1 2020 04:34:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 109.47646 * 2 1 4 4 N 1.46501 * 109.47364 * 180.02562 * 3 2 1 5 5 C 1.46501 * 119.99764 * 269.99858 * 4 3 2 6 6 C 1.39047 * 120.00010 * 89.99608 * 4 3 2 7 7 C 1.39211 * 119.92915 * 179.97438 * 6 4 3 8 8 C 1.37610 * 120.06819 * 180.02562 * 7 6 4 9 9 C 1.39797 * 119.93338 * 359.97438 * 8 7 6 10 10 C 1.47516 * 120.07010 * 180.02562 * 9 8 7 11 11 O 1.21598 * 120.00026 * 0.02562 * 10 9 8 12 12 N 1.34774 * 119.99783 * 180.02562 * 10 9 8 13 13 C 1.46496 * 120.00231 * 180.02562 * 12 10 9 14 14 C 1.53358 * 109.41924 * 275.12893 * 13 12 10 15 15 C 1.53188 * 109.15126 * 178.67149 * 14 13 12 16 16 N 1.46927 * 108.89428 * 54.57704 * 15 14 13 17 17 C 1.36933 * 120.63022 * 126.33925 * 16 15 14 18 18 H 1.08000 * 120.00191 * 331.82823 * 17 16 15 19 19 C 1.38816 * 120.00216 * 151.82741 * 17 16 15 20 20 N 1.31624 * 119.99356 * 343.07025 * 19 17 16 21 21 Si 1.86793 * 120.00395 * 163.07047 * 19 17 16 22 22 H 1.48493 * 109.47484 * 90.00085 * 21 19 17 23 23 H 1.48503 * 109.47169 * 210.00310 * 21 19 17 24 24 H 1.48506 * 109.47138 * 329.99723 * 21 19 17 25 25 C 1.46927 * 118.73625 * 306.32307 * 16 15 14 26 26 C 1.53041 * 109.46693 * 154.99889 * 13 12 10 27 27 C 1.39793 * 119.85717 * 0.27855 * 9 8 7 28 28 C 1.37615 * 119.93373 * 359.46505 * 27 9 8 29 29 H 1.08999 * 109.47150 * 300.00165 * 1 2 3 30 30 H 1.09004 * 109.46717 * 59.99604 * 1 2 3 31 31 H 1.08992 * 109.47452 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47150 * 239.99835 * 2 1 3 33 33 H 1.09001 * 109.47427 * 120.00217 * 2 1 3 34 34 H 1.08999 * 109.46980 * 59.99731 * 3 2 1 35 35 H 1.08997 * 109.46983 * 300.00042 * 3 2 1 36 36 H 1.09000 * 109.47300 * 270.00194 * 5 4 3 37 37 H 1.09000 * 109.47270 * 30.00167 * 5 4 3 38 38 H 1.09006 * 109.46755 * 149.99726 * 5 4 3 39 39 H 1.08002 * 119.97008 * 359.97438 * 7 6 4 40 40 H 1.08005 * 120.03329 * 179.97438 * 8 7 6 41 41 H 0.97000 * 119.99973 * 359.97438 * 12 10 9 42 42 H 1.09005 * 109.46233 * 35.02540 * 13 12 10 43 43 H 1.08999 * 109.68305 * 58.70550 * 14 13 12 44 44 H 1.09002 * 109.46954 * 298.51328 * 14 13 12 45 45 H 1.08997 * 109.58674 * 294.71955 * 15 14 13 46 46 H 1.09000 * 109.58865 * 174.43595 * 15 14 13 47 47 H 0.96997 * 119.99488 * 180.02562 * 20 19 17 48 48 H 1.09002 * 109.58387 * 173.39335 * 25 16 15 49 49 H 1.09004 * 109.58558 * 293.67310 * 25 16 15 50 50 H 1.08998 * 109.49362 * 61.43206 * 26 13 12 51 51 H 1.08995 * 109.49667 * 301.34226 * 26 13 12 52 52 H 1.07997 * 120.03388 * 179.72155 * 27 9 8 53 53 H 1.07997 * 119.96760 * 180.25133 * 28 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5051 1.4424 -0.0006 5 6 4.2381 1.4422 1.2678 6 6 4.1998 1.4425 -1.2051 7 6 5.5920 1.4430 -1.2040 8 6 6.2824 1.4436 -2.3943 9 6 5.5844 1.4432 -3.6056 10 6 6.3215 1.4432 -4.8834 11 8 7.5375 1.4432 -4.8839 12 7 5.6472 1.4433 -6.0503 13 6 6.3791 1.4428 -7.3193 14 6 6.7464 2.8832 -7.6966 15 6 7.5400 2.8726 -9.0069 16 7 6.7617 2.1593 -10.0287 17 6 6.4892 2.7474 -11.2349 18 1 6.4194 3.8227 -11.3079 19 6 6.3027 1.9616 -12.3640 20 7 6.7054 0.7085 -12.3673 21 14 5.4805 2.6825 -13.8783 22 1 6.5119 3.2762 -14.7664 23 1 4.7579 1.6093 -14.6074 24 1 4.5176 3.7349 -13.4651 25 6 6.2817 0.8027 -9.7318 26 6 5.5008 0.8332 -8.4144 27 6 4.1865 1.4480 -3.6033 28 6 3.5018 1.4421 -2.4096 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 1.6768 1.9564 0.8900 35 1 1.6768 1.9563 -0.8900 36 1 4.4199 2.4698 1.5826 37 1 3.6493 0.9283 2.0277 38 1 5.1905 0.9283 1.1370 39 1 6.1307 1.4437 -0.2679 40 1 7.3624 1.4443 -2.3928 41 1 4.6772 1.4430 -6.0499 42 1 7.2893 0.8526 -7.2134 43 1 7.3536 3.3260 -6.9071 44 1 5.8359 3.4680 -7.8273 45 1 8.4925 2.3657 -8.8531 46 1 7.7198 3.8969 -9.3335 47 1 6.5754 0.1595 -13.1563 48 1 5.6291 0.4620 -10.5356 49 1 7.1316 0.1264 -9.6397 50 1 4.6020 1.4373 -8.5381 51 1 5.2214 -0.1821 -8.1334 52 1 3.6444 1.4523 -4.5374 53 1 2.4218 1.4418 -2.4072 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609330485.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:34:38 Heat of formation + Delta-G solvation = -7.562926 kcal Electronic energy + Delta-G solvation = -29839.906187 eV Core-core repulsion = 25903.876027 eV Total energy + Delta-G solvation = -3936.030160 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.33131 -40.27361 -38.92332 -37.43095 -36.00239 -34.43189 -33.89299 -32.09786 -31.88266 -31.47196 -30.42582 -28.40364 -27.12195 -26.06495 -24.16232 -23.83992 -23.20573 -23.03763 -21.95560 -21.16992 -20.78326 -19.26421 -18.60369 -17.77554 -17.37588 -16.83930 -16.51534 -16.03832 -15.97084 -15.76462 -15.64270 -15.41861 -15.32752 -14.91455 -14.81287 -14.68954 -14.43179 -14.29824 -14.07367 -13.91487 -13.40805 -13.32199 -13.18886 -13.06356 -13.00207 -12.77958 -12.66849 -12.59782 -12.50252 -12.23892 -12.19441 -12.02207 -11.87435 -11.75400 -11.55779 -11.52660 -11.35970 -10.86623 -10.79932 -10.55273 -9.99504 -9.96198 -8.70470 -8.27039 -7.87266 -5.33006 0.09805 0.50200 1.48957 1.49781 1.60254 1.98004 2.13394 2.25419 2.52635 3.00914 3.28656 3.65264 3.78745 3.82523 3.92247 3.97233 4.05572 4.07608 4.10928 4.29268 4.33002 4.39127 4.44985 4.46529 4.47903 4.59882 4.64662 4.66695 4.71102 4.75666 4.81614 4.85630 4.92302 4.96198 5.02700 5.05533 5.07972 5.15022 5.21634 5.21858 5.25380 5.28939 5.35766 5.45775 5.46721 5.51861 5.59325 5.64989 5.71401 5.77824 6.29213 6.39372 6.46319 6.66598 7.14666 7.33048 7.83959 8.37710 9.20070 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.018985 B = 0.001908 C = 0.001791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1474.508452 B =14669.110213 C =15630.245116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.139 4.139 3 C 0.115 3.885 4 N -0.624 5.624 5 C 0.082 3.918 6 C 0.242 3.758 7 C -0.213 4.213 8 C -0.022 4.022 9 C -0.219 4.219 10 C 0.557 3.443 11 O -0.594 6.594 12 N -0.710 5.710 13 C 0.162 3.838 14 C -0.123 4.123 15 C 0.145 3.855 16 N -0.608 5.608 17 C -0.263 4.263 18 H 0.068 0.932 19 C -0.051 4.051 20 N -0.936 5.936 21 Si 0.971 3.029 22 H -0.287 1.287 23 H -0.291 1.291 24 H -0.269 1.269 25 C 0.179 3.821 26 C -0.128 4.128 27 C -0.030 4.030 28 C -0.209 4.209 29 H 0.064 0.936 30 H 0.059 0.941 31 H 0.055 0.945 32 H 0.052 0.948 33 H 0.062 0.938 34 H 0.092 0.908 35 H 0.081 0.919 36 H 0.058 0.942 37 H 0.084 0.916 38 H 0.071 0.929 39 H 0.145 0.855 40 H 0.120 0.880 41 H 0.410 0.590 42 H 0.055 0.945 43 H 0.057 0.943 44 H 0.067 0.933 45 H 0.006 0.994 46 H 0.058 0.942 47 H 0.251 0.749 48 H 0.065 0.935 49 H -0.006 1.006 50 H 0.072 0.928 51 H 0.076 0.924 52 H 0.143 0.857 53 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.706 0.199 31.435 34.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.178 4.178 3 C -0.007 4.007 4 N -0.331 5.331 5 C -0.060 4.060 6 C 0.136 3.864 7 C -0.235 4.235 8 C -0.042 4.042 9 C -0.225 4.225 10 C 0.348 3.652 11 O -0.477 6.477 12 N -0.361 5.361 13 C 0.058 3.942 14 C -0.163 4.163 15 C 0.018 3.982 16 N -0.332 5.332 17 C -0.393 4.393 18 H 0.085 0.915 19 C -0.247 4.247 20 N -0.582 5.582 21 Si 0.798 3.202 22 H -0.214 1.214 23 H -0.217 1.217 24 H -0.193 1.193 25 C 0.052 3.948 26 C -0.167 4.167 27 C -0.050 4.050 28 C -0.231 4.231 29 H 0.083 0.917 30 H 0.078 0.922 31 H 0.074 0.926 32 H 0.071 0.929 33 H 0.080 0.920 34 H 0.111 0.889 35 H 0.100 0.900 36 H 0.076 0.924 37 H 0.103 0.897 38 H 0.090 0.910 39 H 0.162 0.838 40 H 0.138 0.862 41 H 0.248 0.752 42 H 0.073 0.927 43 H 0.076 0.924 44 H 0.086 0.914 45 H 0.024 0.976 46 H 0.077 0.923 47 H 0.060 0.940 48 H 0.083 0.917 49 H 0.012 0.988 50 H 0.091 0.909 51 H 0.095 0.905 52 H 0.161 0.839 53 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -13.987 0.106 31.506 34.471 hybrid contribution -0.054 -0.014 -1.238 1.240 sum -14.041 0.092 30.268 33.366 Atomic orbital electron populations 1.21693 0.94278 1.02205 1.02529 1.21915 0.96734 0.97096 1.02064 1.21734 0.77953 0.96992 1.04025 1.46690 1.05803 1.77409 1.03156 1.21875 0.97626 1.02158 0.84372 1.18161 0.91212 0.90187 0.86838 1.20753 0.92423 1.11892 0.98451 1.21007 0.99954 0.92125 0.91083 1.19572 0.94451 1.16319 0.92126 1.18700 0.86867 0.74888 0.84735 1.90726 1.15652 1.52964 1.88346 1.45950 1.10712 1.74629 1.04777 1.20709 0.94914 0.96294 0.82316 1.22225 1.00582 0.96484 0.97052 1.20955 0.92334 0.96116 0.88745 1.44339 1.60480 1.15005 1.13357 1.19511 1.42085 0.91863 0.85864 0.91480 1.25851 1.01563 0.97047 1.00210 1.70193 1.49470 1.08839 1.29681 0.85236 0.78331 0.77372 0.79230 1.21368 1.21713 1.19327 1.20567 0.95046 0.85243 0.93916 1.22251 0.98829 1.00770 0.94888 1.21216 0.91827 0.92831 0.99090 1.20811 1.00773 1.11245 0.90267 0.91743 0.92209 0.92609 0.92874 0.91955 0.88948 0.90039 0.92366 0.89708 0.90988 0.83776 0.86205 0.75242 0.92685 0.92436 0.91425 0.97608 0.92336 0.94004 0.91691 0.98823 0.90946 0.90520 0.83946 0.83400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 9.91 71.98 0.71 -0.14 16 2 C -0.14 -1.06 6.26 30.59 0.19 -0.87 16 3 C 0.12 0.84 5.15 86.38 0.44 1.28 16 4 N -0.62 -6.80 2.99 -722.20 -2.16 -8.96 16 5 C 0.08 0.56 10.17 127.77 1.30 1.86 16 6 C 0.24 3.90 6.55 38.47 0.25 4.15 16 7 C -0.21 -3.91 9.18 22.36 0.21 -3.70 16 8 C -0.02 -0.53 9.58 22.50 0.22 -0.31 16 9 C -0.22 -5.65 5.88 -20.08 -0.12 -5.77 16 10 C 0.56 18.23 7.73 86.69 0.67 18.90 16 11 O -0.59 -24.57 16.00 -4.02 -0.06 -24.64 16 12 N -0.71 -21.02 5.03 -445.08 -2.24 -23.26 16 13 C 0.16 5.93 2.42 45.13 0.11 6.04 16 14 C -0.12 -4.70 5.68 30.78 0.17 -4.52 16 15 C 0.14 6.54 6.50 86.36 0.56 7.11 16 16 N -0.61 -31.53 2.99 -699.11 -2.09 -33.63 16 17 C -0.26 -14.69 9.58 84.04 0.81 -13.88 16 18 H 0.07 3.64 7.88 -2.91 -0.02 3.62 16 19 C -0.05 -2.90 4.92 84.86 0.42 -2.48 16 20 N -0.94 -55.88 11.20 21.65 0.24 -55.63 16 21 Si 0.97 44.95 29.59 68.60 2.03 46.98 16 22 H -0.29 -13.18 7.11 99.48 0.71 -12.48 16 23 H -0.29 -13.41 7.11 99.48 0.71 -12.71 16 24 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 25 C 0.18 8.76 5.30 86.36 0.46 9.22 16 26 C -0.13 -4.74 5.55 30.67 0.17 -4.57 16 27 C -0.03 -0.58 9.53 22.50 0.21 -0.36 16 28 C -0.21 -3.32 9.18 22.36 0.21 -3.12 16 29 H 0.06 0.26 8.14 -2.39 -0.02 0.24 16 30 H 0.06 0.33 8.14 -2.39 -0.02 0.31 16 31 H 0.05 0.36 8.14 -2.39 -0.02 0.34 16 32 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 33 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 34 H 0.09 0.40 8.07 -2.39 -0.02 0.38 16 35 H 0.08 0.58 6.17 -2.39 -0.01 0.56 16 36 H 0.06 0.35 8.14 -2.39 -0.02 0.33 16 37 H 0.08 0.31 8.07 -2.39 -0.02 0.29 16 38 H 0.07 0.51 6.17 -2.38 -0.01 0.50 16 39 H 0.14 2.01 6.11 -2.91 -0.02 1.99 16 40 H 0.12 3.14 7.64 -2.91 -0.02 3.12 16 41 H 0.41 9.30 6.62 -92.71 -0.61 8.68 16 42 H 0.05 2.34 7.58 -2.38 -0.02 2.32 16 43 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 44 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 45 H 0.01 0.28 8.14 -2.39 -0.02 0.26 16 46 H 0.06 2.56 7.93 -2.39 -0.02 2.54 16 47 H 0.25 14.45 8.31 -92.71 -0.77 13.67 16 48 H 0.06 3.53 6.06 -2.39 -0.01 3.51 16 49 H -0.01 -0.34 8.14 -2.38 -0.02 -0.36 16 50 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 51 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 52 H 0.14 2.09 6.39 -2.91 -0.02 2.07 16 53 H 0.15 1.66 6.11 -2.91 -0.02 1.65 16 Total: -1.00 -72.94 415.01 2.99 -69.95 By element: Atomic # 1 Polarization: 20.06 SS G_CDS: 0.28 Total: 20.35 kcal Atomic # 6 Polarization: 1.84 SS G_CDS: 6.99 Total: 8.83 kcal Atomic # 7 Polarization: -115.23 SS G_CDS: -6.25 Total: -121.48 kcal Atomic # 8 Polarization: -24.57 SS G_CDS: -0.06 Total: -24.64 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.98 kcal Total: -72.94 2.99 -69.95 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609330485.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.389 kcal (2) G-P(sol) polarization free energy of solvation -72.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds