Wall clock time and date at job start Wed Apr 1 2020 04:10:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.46899 * 2 1 4 4 H 1.09006 * 109.47117 * 305.00162 * 3 2 1 5 5 C 1.52997 * 109.46884 * 185.00327 * 3 2 1 6 6 C 1.50702 * 109.47465 * 174.99994 * 5 3 2 7 7 C 1.38236 * 119.99721 * 89.99583 * 6 5 3 8 8 C 1.38243 * 119.99459 * 180.02562 * 7 6 5 9 9 C 1.38224 * 120.00140 * 0.02562 * 8 7 6 10 10 C 1.38241 * 120.00376 * 0.25059 * 9 8 7 11 11 C 1.38230 * 119.99506 * 359.49424 * 10 9 8 12 12 N 1.46505 * 109.47423 * 65.00366 * 3 2 1 13 13 C 1.34769 * 119.99808 * 274.99966 * 12 3 2 14 14 O 1.21590 * 120.00154 * 359.97438 * 13 12 3 15 15 N 1.34774 * 120.00198 * 179.97438 * 13 12 3 16 16 C 1.46504 * 120.00418 * 180.02562 * 15 13 12 17 17 C 1.53041 * 109.45625 * 275.02728 * 16 15 13 18 18 C 1.53192 * 109.31111 * 178.60151 * 17 16 15 19 19 N 1.46925 * 108.76694 * 54.65329 * 18 17 16 20 20 C 1.36939 * 120.63356 * 126.36159 * 19 18 17 21 21 H 1.07997 * 119.99948 * 331.85866 * 20 19 18 22 22 C 1.38806 * 120.00384 * 151.85736 * 20 19 18 23 23 N 1.31626 * 119.99744 * 343.08065 * 22 20 19 24 24 Si 1.86791 * 120.00342 * 163.07202 * 22 20 19 25 25 H 1.48504 * 109.47296 * 60.00208 * 24 22 20 26 26 H 1.48504 * 109.47412 * 180.02562 * 24 22 20 27 27 H 1.48502 * 109.47317 * 300.00336 * 24 22 20 28 28 C 1.46931 * 118.73725 * 306.38767 * 19 18 17 29 29 C 1.53035 * 109.46270 * 154.97390 * 16 15 13 30 30 H 1.09002 * 109.46920 * 299.99870 * 1 2 3 31 31 H 1.08994 * 109.47281 * 59.99712 * 1 2 3 32 32 H 1.08995 * 109.47385 * 180.02562 * 1 2 3 33 33 H 1.08995 * 109.46593 * 240.00287 * 2 1 3 34 34 H 1.08994 * 109.47281 * 120.00287 * 2 1 3 35 35 H 1.09004 * 109.47397 * 54.99951 * 5 3 2 36 36 H 1.09000 * 109.47213 * 294.99731 * 5 3 2 37 37 H 1.07997 * 120.00404 * 0.02562 * 7 6 5 38 38 H 1.08001 * 119.99585 * 179.97438 * 8 7 6 39 39 H 1.08001 * 119.99812 * 179.97438 * 9 8 7 40 40 H 1.08002 * 120.00049 * 179.72576 * 10 9 8 41 41 H 1.07998 * 120.00104 * 180.22877 * 11 10 9 42 42 H 0.96993 * 119.99825 * 94.99342 * 12 3 2 43 43 H 0.97005 * 119.99669 * 359.97438 * 15 13 12 44 44 H 1.08999 * 109.46108 * 34.99276 * 16 15 13 45 45 H 1.09004 * 109.49745 * 298.56262 * 17 16 15 46 46 H 1.08998 * 109.50322 * 58.66042 * 17 16 15 47 47 H 1.08997 * 109.59591 * 294.86106 * 18 17 16 48 48 H 1.09005 * 109.69987 * 174.50314 * 18 17 16 49 49 H 0.96999 * 120.00040 * 180.02562 * 23 22 20 50 50 H 1.09003 * 109.58259 * 293.81503 * 28 19 18 51 51 H 1.09004 * 109.70181 * 173.46612 * 28 19 18 52 52 H 1.09006 * 109.49300 * 301.33189 * 29 16 15 53 53 H 1.09002 * 109.49893 * 61.39364 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 3.5648 1.4443 -0.1258 6 6 4.0570 2.8633 -0.2493 7 6 4.3809 3.5837 0.8851 8 6 4.8319 4.8856 0.7718 9 6 4.9585 5.4670 -0.4758 10 6 4.6292 4.7485 -1.6100 11 6 4.1832 3.4450 -1.4970 12 7 1.6525 2.0975 1.2519 13 6 0.4352 2.6644 1.3670 14 8 -0.3412 2.6326 0.4319 15 7 0.0785 3.2665 2.5188 16 6 -1.2449 3.8822 2.6442 17 6 -1.2000 5.3058 2.0841 18 6 -2.5936 5.9340 2.1849 19 7 -3.0510 5.8483 3.5785 20 6 -3.4719 6.9682 4.2448 21 1 -3.0772 7.9368 3.9759 22 6 -4.4056 6.8584 5.2660 23 7 -5.1302 5.7655 5.3805 24 14 -4.6339 8.2615 6.4778 25 1 -5.0455 9.4861 5.7454 26 1 -5.6827 7.8980 7.4642 27 1 -3.3544 8.5158 7.1874 28 6 -3.0478 4.5383 4.2438 29 6 -1.6494 3.9256 4.1196 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 3.8570 0.8800 -1.0114 36 1 4.0029 0.9836 0.7595 37 1 4.2815 3.1296 1.8599 38 1 5.0845 5.4486 1.6581 39 1 5.3105 6.4842 -0.5643 40 1 4.7240 5.2043 -2.5845 41 1 3.9295 2.8823 -2.3832 42 1 2.2720 2.1231 1.9977 43 1 0.6978 3.2916 3.2650 44 1 -1.9732 3.2949 2.0851 45 1 -0.4901 5.9007 2.6588 46 1 -0.8892 5.2762 1.0398 47 1 -3.2857 5.3937 1.5391 48 1 -2.5484 6.9792 1.8787 49 1 -5.7830 5.6889 6.0939 50 1 -3.7772 3.8841 3.7660 51 1 -3.3012 4.6603 5.2969 52 1 -1.6584 2.9135 4.5242 53 1 -0.9348 4.5331 4.6750 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609335590.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:10:03 Heat of formation + Delta-G solvation = -17.311879 kcal Electronic energy + Delta-G solvation = -31000.034406 eV Core-core repulsion = 27063.581499 eV Total energy + Delta-G solvation = -3936.452906 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -41.37631 -40.14590 -39.17297 -37.31787 -35.81932 -34.14493 -33.23101 -32.99382 -31.72942 -31.66767 -30.90974 -29.07168 -26.85894 -25.02470 -24.02764 -23.73127 -23.43451 -22.24149 -21.79460 -21.45144 -21.02404 -19.34110 -18.54522 -17.64003 -17.51813 -16.86800 -16.71570 -16.17963 -16.01567 -15.75303 -15.46666 -15.33787 -15.21871 -14.83877 -14.70618 -14.58963 -14.22533 -14.18674 -14.04847 -13.97056 -13.56829 -13.23114 -13.12834 -12.98920 -12.72902 -12.57305 -12.54223 -12.45454 -12.21332 -12.10608 -12.02713 -11.86990 -11.79913 -11.73384 -11.66619 -11.50803 -11.32311 -11.03593 -10.54725 -10.09864 -9.77607 -9.66434 -9.49405 -8.70793 -7.87684 -5.33651 0.50036 0.55869 1.48797 1.50548 1.57935 1.82306 2.33933 2.52223 2.91550 3.26649 3.39543 3.66931 3.76405 3.92363 3.98561 4.02446 4.08975 4.20085 4.27508 4.29362 4.36143 4.36500 4.46737 4.48274 4.65195 4.66469 4.68240 4.73983 4.82854 4.85815 4.87749 4.95189 5.04713 5.07345 5.09582 5.11510 5.16984 5.21633 5.24269 5.27416 5.30641 5.47197 5.52850 5.62192 5.64155 5.66196 5.69038 5.69904 5.70879 5.81314 6.14910 6.19074 6.38989 7.14448 7.25557 7.77513 7.83773 8.37207 9.19381 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.013541 B = 0.002563 C = 0.002279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2067.238769 B =10920.233309 C =12285.806337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.126 4.126 3 C 0.172 3.828 4 H 0.059 0.941 5 C -0.079 4.079 6 C -0.088 4.088 7 C -0.121 4.121 8 C -0.132 4.132 9 C -0.141 4.141 10 C -0.133 4.133 11 C -0.132 4.132 12 N -0.724 5.724 13 C 0.701 3.299 14 O -0.627 6.627 15 N -0.731 5.731 16 C 0.186 3.814 17 C -0.120 4.120 18 C 0.146 3.854 19 N -0.608 5.608 20 C -0.266 4.266 21 H 0.066 0.934 22 C -0.049 4.049 23 N -0.936 5.936 24 Si 0.970 3.030 25 H -0.278 1.278 26 H -0.294 1.294 27 H -0.275 1.275 28 C 0.180 3.820 29 C -0.127 4.127 30 H 0.033 0.967 31 H 0.035 0.965 32 H 0.051 0.949 33 H 0.089 0.911 34 H 0.078 0.922 35 H 0.106 0.894 36 H 0.100 0.900 37 H 0.137 0.863 38 H 0.132 0.868 39 H 0.129 0.871 40 H 0.131 0.869 41 H 0.131 0.869 42 H 0.406 0.594 43 H 0.406 0.594 44 H 0.053 0.947 45 H 0.063 0.937 46 H 0.053 0.947 47 H 0.005 0.995 48 H 0.055 0.945 49 H 0.251 0.749 50 H -0.007 1.007 51 H 0.063 0.937 52 H 0.076 0.924 53 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.248 -10.942 -9.421 29.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.165 4.165 3 C 0.067 3.933 4 H 0.077 0.923 5 C -0.116 4.116 6 C -0.088 4.088 7 C -0.139 4.139 8 C -0.150 4.150 9 C -0.159 4.159 10 C -0.151 4.151 11 C -0.150 4.150 12 N -0.381 5.381 13 C 0.401 3.599 14 O -0.507 6.507 15 N -0.386 5.386 16 C 0.080 3.920 17 C -0.161 4.161 18 C 0.019 3.981 19 N -0.332 5.332 20 C -0.396 4.396 21 H 0.084 0.916 22 C -0.244 4.244 23 N -0.581 5.581 24 Si 0.798 3.202 25 H -0.203 1.203 26 H -0.220 1.220 27 H -0.201 1.201 28 C 0.054 3.946 29 C -0.167 4.167 30 H 0.053 0.947 31 H 0.054 0.946 32 H 0.070 0.930 33 H 0.108 0.892 34 H 0.097 0.903 35 H 0.124 0.876 36 H 0.118 0.882 37 H 0.155 0.845 38 H 0.150 0.850 39 H 0.147 0.853 40 H 0.149 0.851 41 H 0.149 0.851 42 H 0.242 0.758 43 H 0.242 0.758 44 H 0.071 0.929 45 H 0.081 0.919 46 H 0.072 0.928 47 H 0.023 0.977 48 H 0.074 0.926 49 H 0.060 0.940 50 H 0.011 0.989 51 H 0.082 0.918 52 H 0.094 0.906 53 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 24.426 -11.007 -10.177 28.659 hybrid contribution -0.414 1.009 1.104 1.552 sum 24.011 -9.998 -9.073 27.547 Atomic orbital electron populations 1.21706 0.97044 0.99933 1.01083 1.21953 0.94993 0.95836 1.03695 1.20843 0.94093 0.92696 0.85687 0.92277 1.20924 0.92360 0.92668 1.05651 1.20026 0.98601 0.96912 0.93221 1.21267 0.99236 0.94606 0.98746 1.21429 0.99669 0.95892 0.98019 1.21413 1.00785 1.00587 0.93075 1.21403 0.99454 0.94984 0.99294 1.21320 1.00031 0.95729 0.97875 1.45021 1.14735 1.60586 1.17722 1.16084 0.82747 0.78111 0.82918 1.90910 1.53252 1.66436 1.40135 1.45138 1.17952 1.60346 1.15118 1.20387 0.83046 0.92333 0.96232 1.22147 0.97858 0.96283 0.99799 1.20949 0.93045 0.98399 0.85679 1.44335 1.75349 1.05032 1.08479 1.19490 1.17597 0.88156 1.14396 0.91581 1.25827 0.95688 0.99879 1.03037 1.70185 1.24429 1.29811 1.33708 0.85308 0.77259 0.78981 0.78676 1.20345 1.21974 1.20062 1.20550 0.91644 0.84594 0.97836 1.22244 0.98960 1.00992 0.94459 0.94748 0.94573 0.93035 0.89218 0.90317 0.87576 0.88176 0.84533 0.85040 0.85278 0.85127 0.85123 0.75816 0.75797 0.92870 0.91869 0.92785 0.97689 0.92645 0.93973 0.98901 0.91829 0.90594 0.91243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.31 8.51 71.98 0.61 -2.70 16 2 C -0.13 -1.93 5.61 30.59 0.17 -1.76 16 3 C 0.17 2.86 2.24 44.99 0.10 2.96 16 4 H 0.06 1.39 7.58 -2.38 -0.02 1.37 16 5 C -0.08 -0.81 4.89 29.85 0.15 -0.67 16 6 C -0.09 -1.31 4.95 -19.86 -0.10 -1.41 16 7 C -0.12 -1.79 9.10 22.27 0.20 -1.59 16 8 C -0.13 -2.18 10.05 22.27 0.22 -1.95 16 9 C -0.14 -2.42 10.05 22.27 0.22 -2.20 16 10 C -0.13 -2.29 10.05 22.27 0.22 -2.07 16 11 C -0.13 -2.18 9.70 22.27 0.22 -1.96 16 12 N -0.72 -13.35 4.48 -457.81 -2.05 -15.40 16 13 C 0.70 19.66 7.10 179.06 1.27 20.93 16 14 O -0.63 -23.31 13.14 -4.00 -0.05 -23.37 16 15 N -0.73 -19.52 5.08 -457.69 -2.33 -21.85 16 16 C 0.19 6.50 2.42 45.02 0.11 6.61 16 17 C -0.12 -4.52 5.65 30.67 0.17 -4.35 16 18 C 0.15 6.56 6.52 86.36 0.56 7.12 16 19 N -0.61 -31.39 2.99 -699.10 -2.09 -33.49 16 20 C -0.27 -14.86 9.58 84.03 0.81 -14.05 16 21 H 0.07 3.59 7.88 -2.91 -0.02 3.57 16 22 C -0.05 -2.74 4.92 84.86 0.42 -2.32 16 23 N -0.94 -55.64 11.19 21.65 0.24 -55.40 16 24 Si 0.97 44.79 29.59 68.60 2.03 46.82 16 25 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 26 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 27 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 28 C 0.18 8.74 5.30 86.36 0.46 9.20 16 29 C -0.13 -4.59 5.55 30.67 0.17 -4.42 16 30 H 0.03 0.99 5.65 -2.39 -0.01 0.98 16 31 H 0.04 1.00 7.84 -2.39 -0.02 0.98 16 32 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.11 0.77 8.09 -2.38 -0.02 0.75 16 36 H 0.10 0.64 8.09 -2.39 -0.02 0.62 16 37 H 0.14 1.37 7.57 -2.91 -0.02 1.34 16 38 H 0.13 1.75 8.06 -2.91 -0.02 1.72 16 39 H 0.13 1.81 8.06 -2.91 -0.02 1.79 16 40 H 0.13 1.80 8.06 -2.91 -0.02 1.77 16 41 H 0.13 1.76 8.06 -2.91 -0.02 1.73 16 42 H 0.41 4.99 7.84 -92.71 -0.73 4.26 16 43 H 0.41 8.13 8.62 -92.70 -0.80 7.33 16 44 H 0.05 2.19 7.58 -2.39 -0.02 2.17 16 45 H 0.06 2.29 8.14 -2.38 -0.02 2.27 16 46 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 47 H 0.01 0.24 8.14 -2.39 -0.02 0.22 16 48 H 0.06 2.44 7.93 -2.38 -0.02 2.42 16 49 H 0.25 14.44 8.31 -92.71 -0.77 13.67 16 50 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 51 H 0.06 3.43 6.06 -2.38 -0.01 3.42 16 52 H 0.08 2.42 8.14 -2.38 -0.02 2.40 16 53 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 Total: -1.00 -72.76 414.52 1.11 -71.65 By element: Atomic # 1 Polarization: 26.27 SS G_CDS: -0.63 Total: 25.64 kcal Atomic # 6 Polarization: -0.60 SS G_CDS: 5.99 Total: 5.38 kcal Atomic # 7 Polarization: -119.91 SS G_CDS: -6.23 Total: -126.14 kcal Atomic # 8 Polarization: -23.31 SS G_CDS: -0.05 Total: -23.37 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.82 kcal Total: -72.76 1.11 -71.65 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609335590.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.342 kcal (2) G-P(sol) polarization free energy of solvation -72.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds