Wall clock time and date at job start Wed Apr 1 2020 04:16:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47120 * 2 1 4 4 H 1.09002 * 109.47045 * 54.10730 * 3 2 1 5 5 C 1.53006 * 109.47187 * 174.10209 * 3 2 1 6 6 N 1.46497 * 109.47165 * 296.14282 * 5 3 2 7 7 C 1.34775 * 119.99990 * 174.74361 * 6 5 3 8 8 O 1.21586 * 120.00040 * 0.02562 * 7 6 5 9 9 N 1.34778 * 120.00323 * 179.97438 * 7 6 5 10 10 C 1.46501 * 120.00352 * 180.02562 * 9 7 6 11 11 C 1.53037 * 109.45764 * 275.03088 * 10 9 7 12 12 C 1.53197 * 109.31263 * 178.60140 * 11 10 9 13 13 N 1.46923 * 108.76551 * 54.65131 * 12 11 10 14 14 C 1.36941 * 120.63260 * 126.40476 * 13 12 11 15 15 H 1.07997 * 119.99795 * 331.68159 * 14 13 12 16 16 C 1.38807 * 119.99861 * 151.67037 * 14 13 12 17 17 N 1.31613 * 120.00365 * 343.10040 * 16 14 13 18 18 Si 1.86801 * 119.99751 * 163.09631 * 16 14 13 19 19 H 1.48503 * 109.46996 * 89.99993 * 18 16 14 20 20 H 1.48499 * 109.47397 * 210.00291 * 18 16 14 21 21 H 1.48502 * 109.47361 * 330.00403 * 18 16 14 22 22 C 1.46926 * 118.73708 * 306.38771 * 13 12 11 23 23 C 1.53040 * 109.45970 * 154.97315 * 10 9 7 24 24 C 1.50697 * 109.47609 * 294.10645 * 3 2 1 25 25 C 1.38239 * 119.99725 * 299.72612 * 24 3 2 26 26 C 1.38231 * 119.99812 * 179.80607 * 25 24 3 27 27 C 1.38228 * 120.00205 * 0.39905 * 26 25 24 28 28 C 1.38239 * 119.99953 * 359.85373 * 27 26 25 29 29 C 1.38232 * 119.99972 * 359.96060 * 28 27 26 30 30 H 1.09010 * 109.47014 * 180.99912 * 1 2 3 31 31 H 1.09001 * 109.47263 * 300.99980 * 1 2 3 32 32 H 1.09005 * 109.47188 * 61.00122 * 1 2 3 33 33 H 1.09003 * 109.47460 * 240.00111 * 2 1 3 34 34 H 1.09004 * 109.46958 * 120.00604 * 2 1 3 35 35 H 1.09001 * 109.46745 * 56.14237 * 5 3 2 36 36 H 1.08998 * 109.47134 * 176.13909 * 5 3 2 37 37 H 0.97004 * 120.00201 * 354.75109 * 6 5 3 38 38 H 0.97004 * 119.99868 * 0.02562 * 9 7 6 39 39 H 1.08996 * 109.45914 * 35.00207 * 10 9 7 40 40 H 1.09000 * 109.49739 * 298.56146 * 11 10 9 41 41 H 1.09000 * 109.50230 * 58.65780 * 11 10 9 42 42 H 1.08997 * 109.59365 * 294.86822 * 12 11 10 43 43 H 1.09002 * 109.70049 * 174.50455 * 12 11 10 44 44 H 0.97003 * 119.99775 * 179.97438 * 17 16 14 45 45 H 1.08998 * 109.58679 * 293.81651 * 22 13 12 46 46 H 1.09010 * 109.70219 * 173.46665 * 22 13 12 47 47 H 1.08996 * 109.50144 * 301.33648 * 23 10 9 48 48 H 1.09000 * 109.49559 * 61.40432 * 23 10 9 49 49 H 1.08004 * 120.00066 * 359.97438 * 25 24 3 50 50 H 1.08000 * 119.99859 * 180.22776 * 26 25 24 51 51 H 1.08004 * 120.00473 * 179.83085 * 27 26 25 52 52 H 1.08001 * 119.99969 * 179.97438 * 28 27 26 53 53 H 1.07997 * 120.00122 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5930 1.9858 0.8325 5 6 3.5628 1.4450 0.1482 6 7 3.9277 0.8801 1.4497 7 6 5.2246 0.6832 1.7592 8 8 6.0917 0.9749 0.9583 9 7 5.5604 0.1640 2.9567 10 6 6.9702 -0.0495 3.2933 11 6 7.4266 -1.4023 2.7423 12 6 8.9101 -1.6066 3.0657 13 7 9.1044 -1.4483 4.5134 14 6 9.7260 -2.4249 5.2449 15 1 9.6738 -3.4550 4.9248 16 6 10.4233 -2.0908 6.3977 17 7 10.7743 -0.8412 6.6156 18 14 10.8633 -3.4147 7.6399 19 1 12.1902 -3.9893 7.3018 20 1 10.9131 -2.8206 8.9999 21 1 9.8364 -4.4869 7.6054 22 6 8.6194 -0.2220 5.1613 23 6 7.1393 -0.0331 4.8142 24 6 1.6603 2.1096 -1.2968 25 6 2.1182 1.5985 -2.4969 26 6 1.7667 2.2081 -3.6867 27 6 0.9642 3.3335 -3.6761 28 6 0.5107 3.8477 -2.4757 29 6 0.8590 3.2359 -1.2861 30 1 -0.3633 -1.0276 0.0179 31 1 -0.3634 0.5293 0.8809 32 1 -0.3634 0.4982 -0.8989 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 4.0061 0.8442 -0.6459 36 1 3.9328 2.4680 0.0795 37 1 3.2359 0.6476 2.0887 38 1 4.8687 -0.0684 3.5958 39 1 7.5730 0.7443 2.8523 40 1 6.8410 -2.1986 3.2017 41 1 7.2839 -1.4221 1.6619 42 1 9.5057 -0.8648 2.5338 43 1 9.2177 -2.6076 2.7630 44 1 11.2613 -0.6077 7.4214 45 1 9.1914 0.6327 4.8003 46 1 8.7332 -0.3077 6.2421 47 1 6.7922 0.9218 5.2087 48 1 6.5559 -0.8421 5.2539 49 1 2.7483 0.7213 -2.5050 50 1 2.1214 1.8066 -4.6245 51 1 0.6918 3.8114 -4.6055 52 1 -0.1160 4.7272 -2.4674 53 1 0.5043 3.6373 -0.3483 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609336069.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:16:40 Heat of formation + Delta-G solvation = -20.413708 kcal Electronic energy + Delta-G solvation = -29865.817358 eV Core-core repulsion = 25929.229946 eV Total energy + Delta-G solvation = -3936.587412 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -41.29855 -40.44694 -39.11396 -37.38634 -35.93369 -34.73213 -33.75756 -31.83719 -31.77454 -31.63960 -31.12506 -29.02060 -26.83882 -24.85765 -23.92175 -23.84309 -23.56794 -23.12533 -21.78177 -21.04061 -20.87240 -19.41349 -18.60217 -17.78817 -17.39879 -16.80920 -16.62431 -16.25301 -15.81511 -15.74952 -15.70454 -15.35636 -15.25521 -15.08084 -14.83325 -14.65905 -14.37238 -14.22249 -14.11606 -14.02382 -13.70309 -13.40311 -13.19205 -12.99802 -12.83904 -12.60188 -12.50235 -12.38341 -12.22437 -12.02811 -12.01040 -11.91217 -11.85512 -11.57958 -11.55326 -11.50923 -11.38025 -11.19045 -10.54993 -10.29093 -9.77889 -9.70979 -9.57713 -8.69506 -7.86907 -5.32664 0.46698 0.54424 1.49055 1.50101 1.60308 1.73199 2.20484 2.52923 2.90890 3.26200 3.34290 3.66708 3.67755 3.79668 3.92337 4.02581 4.08919 4.13948 4.19454 4.30937 4.35581 4.36347 4.47817 4.49988 4.59136 4.66010 4.66630 4.72312 4.73029 4.83051 4.86777 4.96030 5.02829 5.05623 5.08217 5.09089 5.17642 5.20611 5.23298 5.29227 5.31295 5.43464 5.47719 5.51691 5.62338 5.63651 5.65790 5.67665 5.71438 5.75375 6.06922 6.16183 6.40035 7.15427 7.16891 7.64673 7.84843 8.38258 9.20311 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.028312 B = 0.001729 C = 0.001707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.733940 B =16189.929376 C =16395.320100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.115 4.115 3 C -0.046 4.046 4 H 0.101 0.899 5 C 0.152 3.848 6 N -0.729 5.729 7 C 0.699 3.301 8 O -0.639 6.639 9 N -0.726 5.726 10 C 0.182 3.818 11 C -0.123 4.123 12 C 0.144 3.856 13 N -0.608 5.608 14 C -0.264 4.264 15 H 0.067 0.933 16 C -0.050 4.050 17 N -0.936 5.936 18 Si 0.969 3.031 19 H -0.287 1.287 20 H -0.291 1.291 21 H -0.269 1.269 22 C 0.178 3.822 23 C -0.127 4.127 24 C -0.078 4.078 25 C -0.127 4.127 26 C -0.130 4.130 27 C -0.132 4.132 28 C -0.127 4.127 29 C -0.122 4.122 30 H 0.056 0.944 31 H 0.063 0.937 32 H 0.048 0.952 33 H 0.058 0.942 34 H 0.073 0.927 35 H 0.054 0.946 36 H 0.049 0.951 37 H 0.412 0.588 38 H 0.410 0.590 39 H 0.053 0.947 40 H 0.067 0.933 41 H 0.056 0.944 42 H 0.005 0.995 43 H 0.057 0.943 44 H 0.251 0.749 45 H -0.007 1.007 46 H 0.064 0.936 47 H 0.076 0.924 48 H 0.072 0.928 49 H 0.120 0.880 50 H 0.132 0.868 51 H 0.136 0.864 52 H 0.139 0.861 53 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.936 6.554 -15.105 32.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.152 4.152 3 C -0.065 4.065 4 H 0.119 0.881 5 C 0.027 3.973 6 N -0.386 5.386 7 C 0.399 3.601 8 O -0.520 6.520 9 N -0.380 5.380 10 C 0.076 3.924 11 C -0.163 4.163 12 C 0.018 3.982 13 N -0.332 5.332 14 C -0.394 4.394 15 H 0.085 0.915 16 C -0.245 4.245 17 N -0.582 5.582 18 Si 0.797 3.203 19 H -0.214 1.214 20 H -0.217 1.217 21 H -0.193 1.193 22 C 0.052 3.948 23 C -0.167 4.167 24 C -0.079 4.079 25 C -0.145 4.145 26 C -0.148 4.148 27 C -0.150 4.150 28 C -0.145 4.145 29 C -0.139 4.139 30 H 0.075 0.925 31 H 0.082 0.918 32 H 0.067 0.933 33 H 0.077 0.923 34 H 0.092 0.908 35 H 0.072 0.928 36 H 0.067 0.933 37 H 0.249 0.751 38 H 0.246 0.754 39 H 0.071 0.929 40 H 0.085 0.915 41 H 0.075 0.925 42 H 0.023 0.977 43 H 0.076 0.924 44 H 0.060 0.940 45 H 0.011 0.989 46 H 0.082 0.918 47 H 0.095 0.905 48 H 0.090 0.910 49 H 0.138 0.862 50 H 0.150 0.850 51 H 0.154 0.846 52 H 0.157 0.843 53 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -27.076 6.874 -15.707 32.048 hybrid contribution 0.414 -0.602 1.005 1.242 sum -26.662 6.272 -14.702 31.086 Atomic orbital electron populations 1.21726 0.94786 1.01870 1.02008 1.21598 0.96697 0.94314 1.02601 1.20367 0.92740 0.97478 0.95917 0.88081 1.21154 0.94710 0.97673 0.83740 1.44909 1.05012 1.69074 1.19625 1.16158 0.83418 0.78235 0.82315 1.90903 1.50010 1.59926 1.51191 1.45109 1.08681 1.67770 1.16487 1.20469 0.80439 0.96391 0.95104 1.22174 0.97186 0.97330 0.99614 1.20966 0.93890 0.98647 0.84685 1.44342 1.66870 1.19402 1.02566 1.19509 1.25523 0.88570 1.05756 0.91508 1.25829 0.97964 0.98245 1.02509 1.70187 1.42002 1.18650 1.27320 0.85257 0.78012 0.78811 0.78209 1.21405 1.21739 1.19338 1.20567 0.89672 0.86577 0.97986 1.22249 0.98789 1.02042 0.93572 1.19691 0.98017 0.95987 0.94179 1.21185 1.00219 1.00500 0.92616 1.21390 0.98463 0.96496 0.98473 1.21446 0.98041 0.96526 0.99007 1.21439 1.00170 1.00453 0.92435 1.21306 0.98236 0.95239 0.99169 0.92492 0.91775 0.93327 0.92344 0.90839 0.92780 0.93253 0.75112 0.75358 0.92869 0.91461 0.92518 0.97694 0.92427 0.94016 0.98863 0.91789 0.90516 0.90970 0.86223 0.85046 0.84575 0.84319 0.84598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 9.72 71.98 0.70 -0.76 16 2 C -0.11 -1.30 5.24 30.59 0.16 -1.14 16 3 C -0.05 -0.57 2.06 -11.54 -0.02 -0.60 16 4 H 0.10 0.95 7.88 -2.39 -0.02 0.93 16 5 C 0.15 2.85 4.83 86.38 0.42 3.27 16 6 N -0.73 -13.89 5.14 -478.53 -2.46 -16.35 16 7 C 0.70 20.16 8.53 179.05 1.53 21.69 16 8 O -0.64 -25.16 16.00 -3.99 -0.06 -25.23 16 9 N -0.73 -19.13 5.08 -457.69 -2.33 -21.45 16 10 C 0.18 6.29 2.42 45.02 0.11 6.40 16 11 C -0.12 -4.49 5.65 30.67 0.17 -4.32 16 12 C 0.14 6.39 6.52 86.36 0.56 6.96 16 13 N -0.61 -31.01 2.99 -699.09 -2.09 -33.10 16 14 C -0.26 -14.54 9.58 84.03 0.81 -13.74 16 15 H 0.07 3.59 7.88 -2.91 -0.02 3.56 16 16 C -0.05 -2.80 4.92 84.86 0.42 -2.38 16 17 N -0.94 -55.39 11.20 21.65 0.24 -55.14 16 18 Si 0.97 44.55 29.59 68.60 2.03 46.58 16 19 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 20 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 21 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 22 C 0.18 8.58 5.30 86.36 0.46 9.03 16 23 C -0.13 -4.51 5.55 30.67 0.17 -4.34 16 24 C -0.08 -1.11 3.82 -19.87 -0.08 -1.19 16 25 C -0.13 -1.99 8.68 22.27 0.19 -1.80 16 26 C -0.13 -1.86 10.05 22.27 0.22 -1.64 16 27 C -0.13 -1.68 10.05 22.27 0.22 -1.46 16 28 C -0.13 -1.54 10.05 22.27 0.22 -1.32 16 29 C -0.12 -1.55 9.67 22.27 0.22 -1.33 16 30 H 0.06 0.55 8.14 -2.38 -0.02 0.53 16 31 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.05 0.57 7.44 -2.38 -0.02 0.55 16 33 H 0.06 0.78 7.22 -2.39 -0.02 0.76 16 34 H 0.07 0.76 7.09 -2.39 -0.02 0.74 16 35 H 0.05 1.21 7.50 -2.39 -0.02 1.19 16 36 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.41 4.91 7.78 -92.71 -0.72 4.18 16 38 H 0.41 7.77 8.62 -92.71 -0.80 6.97 16 39 H 0.05 2.18 7.58 -2.39 -0.02 2.16 16 40 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 41 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 42 H 0.01 0.24 8.14 -2.39 -0.02 0.22 16 43 H 0.06 2.48 7.93 -2.39 -0.02 2.46 16 44 H 0.25 14.33 8.31 -92.71 -0.77 13.56 16 45 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16 46 H 0.06 3.42 6.08 -2.38 -0.01 3.41 16 47 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 48 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 49 H 0.12 1.84 7.12 -2.91 -0.02 1.82 16 50 H 0.13 1.48 8.06 -2.91 -0.02 1.45 16 51 H 0.14 1.18 8.06 -2.91 -0.02 1.15 16 52 H 0.14 1.09 8.06 -2.91 -0.02 1.07 16 53 H 0.14 1.23 7.95 -2.91 -0.02 1.21 16 Total: -1.00 -72.35 417.77 1.19 -71.16 By element: Atomic # 1 Polarization: 22.81 SS G_CDS: -0.62 Total: 22.19 kcal Atomic # 6 Polarization: 4.87 SS G_CDS: 6.48 Total: 11.35 kcal Atomic # 7 Polarization: -119.42 SS G_CDS: -6.63 Total: -126.05 kcal Atomic # 8 Polarization: -25.16 SS G_CDS: -0.06 Total: -25.23 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Total: -72.35 1.19 -71.16 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609336069.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.749 kcal (2) G-P(sol) polarization free energy of solvation -72.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds