Wall clock time and date at job start Wed Apr 1 2020 03:49:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.46885 * 2 1 4 4 C 1.52996 * 109.47121 * 120.00139 * 2 1 3 5 5 N 1.46502 * 109.47048 * 300.00107 * 4 2 1 6 6 C 1.34778 * 119.99545 * 180.02562 * 5 4 2 7 7 O 1.21585 * 120.00569 * 359.97438 * 6 5 4 8 8 N 1.34781 * 119.99776 * 180.02562 * 6 5 4 9 9 C 1.46500 * 119.99994 * 179.97438 * 8 6 5 10 10 C 1.53076 * 109.43981 * 84.79590 * 9 8 6 11 11 C 1.53183 * 109.29478 * 181.23571 * 10 9 8 12 12 N 1.46930 * 108.89468 * 305.57480 * 11 10 9 13 13 C 1.36937 * 120.63259 * 233.51494 * 12 11 10 14 14 H 1.08000 * 119.99761 * 151.83401 * 13 12 11 15 15 C 1.38806 * 120.00219 * 331.83653 * 13 12 11 16 16 N 1.31624 * 120.00191 * 343.07619 * 15 13 12 17 17 Si 1.86800 * 120.00146 * 163.07294 * 15 13 12 18 18 H 1.48506 * 109.46812 * 0.02562 * 17 15 13 19 19 H 1.48499 * 109.47258 * 119.99807 * 17 15 13 20 20 H 1.48499 * 109.47344 * 240.00342 * 17 15 13 21 21 C 1.46925 * 118.73328 * 53.53726 * 12 11 10 22 22 C 1.53033 * 109.45902 * 204.99610 * 9 8 6 23 23 C 1.50700 * 109.46999 * 240.00529 * 2 1 3 24 24 C 1.38235 * 119.99782 * 239.71981 * 23 2 1 25 25 C 1.38229 * 120.00070 * 179.76310 * 24 23 2 26 26 C 1.38233 * 120.00045 * 0.51493 * 25 24 23 27 27 C 1.38231 * 119.99924 * 359.74253 * 26 25 24 28 28 C 1.38233 * 120.00476 * 59.99785 * 23 2 1 29 29 H 1.09000 * 109.47522 * 299.99765 * 1 2 3 30 30 H 1.09004 * 109.47567 * 59.99865 * 1 2 3 31 31 H 1.09000 * 109.46905 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47418 * 179.97438 * 3 2 1 33 33 H 1.09002 * 109.47554 * 300.00089 * 3 2 1 34 34 H 1.09010 * 109.47156 * 60.00326 * 3 2 1 35 35 H 1.09000 * 109.46822 * 180.02562 * 4 2 1 36 36 H 1.09000 * 109.47239 * 60.00195 * 4 2 1 37 37 H 0.96997 * 120.00325 * 0.02562 * 5 4 2 38 38 H 0.97007 * 119.99982 * 359.97438 * 8 6 5 39 39 H 1.08994 * 109.45870 * 324.97548 * 9 8 6 40 40 H 1.09005 * 109.39190 * 61.35477 * 10 9 8 41 41 H 1.09004 * 109.62337 * 301.25270 * 10 9 8 42 42 H 1.09005 * 109.58619 * 185.72200 * 11 10 9 43 43 H 1.08998 * 109.58733 * 65.43770 * 11 10 9 44 44 H 0.96995 * 120.00379 * 180.02562 * 16 15 13 45 45 H 1.09001 * 109.58688 * 66.18006 * 21 12 11 46 46 H 1.08996 * 109.58570 * 186.45714 * 21 12 11 47 47 H 1.09003 * 109.49897 * 58.68032 * 22 9 8 48 48 H 1.09000 * 109.52987 * 298.59684 * 22 9 8 49 49 H 1.08003 * 120.00004 * 0.02562 * 24 23 2 50 50 H 1.08003 * 120.00350 * 180.23110 * 25 24 23 51 51 H 1.08002 * 120.00577 * 179.72147 * 26 25 24 52 52 H 1.07998 * 120.00155 * 179.97438 * 27 26 25 53 53 H 1.07999 * 119.99393 * 0.02562 * 28 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.5516 -0.0307 2.4454 6 6 1.8776 -0.4909 3.6695 7 8 2.5767 -1.4795 3.7810 8 7 1.4280 0.1441 4.7700 9 6 1.7819 -0.3565 6.1005 10 6 3.1471 0.2028 6.5087 11 6 3.5278 -0.3471 7.8869 12 7 2.4438 -0.0508 8.8334 13 6 2.7032 0.6006 10.0097 14 1 1.9376 1.2062 10.4717 15 6 3.9501 0.4827 10.6080 16 7 4.7619 -0.4901 10.2515 17 14 4.4762 1.7047 11.9193 18 1 3.3906 2.6943 12.1377 19 1 4.7495 0.9826 13.1878 20 1 5.7062 2.4084 11.4753 21 6 1.0763 -0.4673 8.4941 22 6 0.7211 0.0865 7.1107 23 6 2.0323 -0.7103 -1.2305 24 6 2.8318 -1.8308 -1.1038 25 6 3.2885 -2.4853 -2.2324 26 6 2.9546 -2.0130 -3.4879 27 6 2.1595 -0.8894 -3.6147 28 6 1.6983 -0.2380 -2.4860 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 3.1299 1.4426 0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.6766 1.9564 0.8901 35 1 3.1299 -0.7208 1.2494 36 1 1.6767 -1.7489 1.2492 37 1 0.9936 0.7577 2.3564 38 1 0.8699 0.9326 4.6810 39 1 1.8298 -1.4452 6.0780 40 1 3.0940 1.2907 6.5530 41 1 3.8985 -0.0957 5.7776 42 1 4.4493 0.1256 8.2271 43 1 3.6725 -1.4255 7.8228 44 1 5.6331 -0.5727 10.6698 45 1 1.0193 -1.5557 8.4776 46 1 0.3805 -0.0763 9.2363 47 1 -0.2535 -0.2945 6.8055 48 1 0.6894 1.1752 7.1519 49 1 3.0961 -2.1975 -0.1229 50 1 3.9101 -3.3630 -2.1334 51 1 3.3151 -2.5217 -4.3698 52 1 1.8989 -0.5201 -4.5956 53 1 1.0777 0.6403 -2.5850 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609337211.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:49:56 Heat of formation + Delta-G solvation = -13.624090 kcal Electronic energy + Delta-G solvation = -30191.144635 eV Core-core repulsion = 26254.851644 eV Total energy + Delta-G solvation = -3936.292992 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -41.45496 -40.59684 -39.12474 -37.70030 -35.95116 -34.61045 -33.70173 -31.93838 -31.70663 -31.16473 -30.49375 -28.15983 -27.75388 -26.59809 -24.09613 -23.88338 -23.50586 -22.99009 -21.81906 -21.05802 -20.29864 -19.40880 -18.66717 -17.82533 -17.37713 -16.77327 -16.56423 -16.11014 -15.98689 -15.75866 -15.42221 -15.33974 -15.20953 -15.08399 -14.79564 -14.61552 -14.35781 -14.29310 -14.12732 -13.96813 -13.80442 -13.17712 -13.06515 -13.01818 -12.77974 -12.76348 -12.64996 -12.56585 -12.30471 -12.10932 -12.03895 -12.00112 -11.84886 -11.58815 -11.52587 -11.43594 -11.42846 -11.18429 -10.58954 -10.30458 -9.80721 -9.70217 -9.58502 -8.70692 -7.86696 -5.33293 0.47388 0.52544 1.47228 1.48761 1.59731 1.70791 2.19938 2.52033 2.90090 3.25821 3.33243 3.56127 3.67442 3.70732 3.90144 3.95831 4.11604 4.13301 4.16887 4.22439 4.32432 4.36397 4.49225 4.60667 4.65727 4.66135 4.68531 4.70998 4.81675 4.82178 4.87871 4.94979 4.96110 5.00313 5.07101 5.10401 5.14939 5.17574 5.19756 5.28656 5.33369 5.38993 5.45095 5.48843 5.62241 5.64336 5.65259 5.67384 5.70449 5.71419 6.05797 6.14796 6.39386 7.13682 7.16444 7.64480 7.84962 8.38026 9.20538 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.024761 B = 0.001835 C = 0.001796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.561787 B =15253.744766 C =15589.739678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.025 4.025 3 C -0.138 4.138 4 C 0.152 3.848 5 N -0.727 5.727 6 C 0.698 3.302 7 O -0.640 6.640 8 N -0.724 5.724 9 C 0.181 3.819 10 C -0.130 4.130 11 C 0.183 3.817 12 N -0.609 5.609 13 C -0.259 4.259 14 H 0.075 0.925 15 C -0.057 4.057 16 N -0.940 5.940 17 Si 0.969 3.031 18 H -0.261 1.261 19 H -0.294 1.294 20 H -0.293 1.293 21 C 0.141 3.859 22 C -0.119 4.119 23 C -0.075 4.075 24 C -0.143 4.143 25 C -0.130 4.130 26 C -0.133 4.133 27 C -0.123 4.123 28 C -0.116 4.116 29 H 0.070 0.930 30 H 0.077 0.923 31 H 0.049 0.951 32 H 0.046 0.954 33 H 0.078 0.922 34 H 0.069 0.931 35 H 0.049 0.951 36 H 0.053 0.947 37 H 0.411 0.589 38 H 0.411 0.589 39 H 0.053 0.947 40 H 0.061 0.939 41 H 0.041 0.959 42 H 0.054 0.946 43 H -0.013 1.013 44 H 0.249 0.751 45 H 0.010 0.990 46 H 0.069 0.931 47 H 0.091 0.909 48 H 0.077 0.923 49 H 0.115 0.885 50 H 0.128 0.872 51 H 0.138 0.862 52 H 0.143 0.857 53 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.764 4.907 -29.900 32.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.026 4.026 3 C -0.195 4.195 4 C 0.027 3.973 5 N -0.384 5.384 6 C 0.397 3.603 7 O -0.521 6.521 8 N -0.379 5.379 9 C 0.076 3.924 10 C -0.170 4.170 11 C 0.056 3.944 12 N -0.332 5.332 13 C -0.389 4.389 14 H 0.093 0.907 15 C -0.252 4.252 16 N -0.586 5.586 17 Si 0.798 3.202 18 H -0.185 1.185 19 H -0.221 1.221 20 H -0.220 1.220 21 C 0.015 3.985 22 C -0.159 4.159 23 C -0.075 4.075 24 C -0.161 4.161 25 C -0.148 4.148 26 C -0.151 4.151 27 C -0.141 4.141 28 C -0.134 4.134 29 H 0.089 0.911 30 H 0.096 0.904 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.097 0.903 34 H 0.088 0.912 35 H 0.067 0.933 36 H 0.071 0.929 37 H 0.249 0.751 38 H 0.247 0.753 39 H 0.071 0.929 40 H 0.080 0.920 41 H 0.060 0.940 42 H 0.072 0.928 43 H 0.005 0.995 44 H 0.058 0.942 45 H 0.028 0.972 46 H 0.088 0.912 47 H 0.110 0.890 48 H 0.095 0.905 49 H 0.133 0.867 50 H 0.146 0.854 51 H 0.155 0.845 52 H 0.161 0.839 53 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -11.022 3.991 -29.732 31.960 hybrid contribution 0.716 0.427 0.972 1.280 sum -10.306 4.418 -28.761 30.869 Atomic orbital electron populations 1.21900 0.91724 1.02350 1.03402 1.19637 0.97160 0.95735 0.90035 1.21911 1.00941 0.93281 1.03376 1.21259 0.97987 0.95367 0.82658 1.44925 1.56745 1.33648 1.03125 1.16189 0.80029 0.82580 0.81472 1.90912 1.44619 1.29952 1.86637 1.45075 1.55917 1.33001 1.03939 1.20489 0.94125 0.97433 0.80370 1.22317 0.97142 1.00430 0.97113 1.20454 0.92183 0.94906 0.86861 1.44351 1.03247 1.67204 1.18425 1.19612 0.98796 1.21037 0.99441 0.90725 1.25899 0.99297 0.99116 1.00850 1.70222 1.10007 1.31887 1.46475 0.85174 0.77988 0.78820 0.78263 1.18485 1.22128 1.21964 1.21056 0.86431 0.95938 0.95111 1.22120 0.97601 1.01986 0.94188 1.19743 0.97663 0.95487 0.94657 1.21338 0.98966 0.96596 0.99171 1.21377 1.00197 1.00327 0.92895 1.21446 0.98719 0.97266 0.97634 1.21463 0.97513 0.95653 0.99497 1.21180 1.00362 1.00589 0.91286 0.91079 0.90374 0.93171 0.93458 0.90311 0.91178 0.93255 0.92855 0.75147 0.75252 0.92888 0.92017 0.93985 0.92774 0.99482 0.94228 0.97161 0.91240 0.89017 0.90472 0.86687 0.85394 0.84455 0.83879 0.84058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.41 8.11 71.98 0.58 -0.83 16 2 C -0.03 -0.34 0.61 -52.93 -0.03 -0.37 16 3 C -0.14 -1.55 8.11 71.98 0.58 -0.96 16 4 C 0.15 3.08 3.22 86.38 0.28 3.36 16 5 N -0.73 -14.58 4.96 -478.53 -2.37 -16.95 16 6 C 0.70 20.83 8.53 179.05 1.53 22.35 16 7 O -0.64 -26.27 16.01 -3.98 -0.06 -26.33 16 8 N -0.72 -19.15 5.08 -457.64 -2.33 -21.47 16 9 C 0.18 6.28 2.41 45.03 0.11 6.39 16 10 C -0.13 -5.35 5.66 30.68 0.17 -5.18 16 11 C 0.18 9.43 5.30 86.36 0.46 9.89 16 12 N -0.61 -30.93 3.00 -699.11 -2.09 -33.02 16 13 C -0.26 -14.21 9.58 84.03 0.81 -13.41 16 14 H 0.08 3.90 7.89 -2.91 -0.02 3.88 16 15 C -0.06 -3.22 4.92 84.86 0.42 -2.80 16 16 N -0.94 -57.54 11.20 21.65 0.24 -57.30 16 17 Si 0.97 45.26 29.59 68.60 2.03 47.29 16 18 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 19 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 20 H -0.29 -13.71 7.11 99.48 0.71 -13.01 16 21 C 0.14 5.68 6.52 86.36 0.56 6.24 16 22 C -0.12 -3.66 5.55 30.67 0.17 -3.49 16 23 C -0.07 -1.16 4.76 -19.87 -0.09 -1.26 16 24 C -0.14 -2.65 8.98 22.27 0.20 -2.45 16 25 C -0.13 -2.14 10.05 22.27 0.22 -1.91 16 26 C -0.13 -1.79 10.05 22.27 0.22 -1.56 16 27 C -0.12 -1.47 10.05 22.27 0.22 -1.24 16 28 C -0.12 -1.44 8.71 22.27 0.19 -1.25 16 29 H 0.07 0.58 6.86 -2.39 -0.02 0.57 16 30 H 0.08 0.57 7.39 -2.38 -0.02 0.55 16 31 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.08 0.63 7.39 -2.39 -0.02 0.61 16 34 H 0.07 0.65 6.86 -2.38 -0.02 0.63 16 35 H 0.05 1.21 7.50 -2.39 -0.02 1.19 16 36 H 0.05 1.25 7.53 -2.39 -0.02 1.24 16 37 H 0.41 5.25 6.18 -92.71 -0.57 4.68 16 38 H 0.41 7.48 8.62 -92.70 -0.80 6.68 16 39 H 0.05 2.17 7.58 -2.39 -0.02 2.15 16 40 H 0.06 2.44 8.14 -2.38 -0.02 2.42 16 41 H 0.04 1.81 8.14 -2.38 -0.02 1.79 16 42 H 0.05 3.14 6.06 -2.38 -0.01 3.13 16 43 H -0.01 -0.74 8.14 -2.39 -0.02 -0.76 16 44 H 0.25 14.74 8.31 -92.71 -0.77 13.97 16 45 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 46 H 0.07 2.63 7.93 -2.39 -0.02 2.61 16 47 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 48 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 49 H 0.12 2.35 5.90 -2.91 -0.02 2.34 16 50 H 0.13 1.79 8.06 -2.91 -0.02 1.77 16 51 H 0.14 1.26 8.06 -2.91 -0.02 1.24 16 52 H 0.14 0.99 8.06 -2.91 -0.02 0.97 16 53 H 0.14 1.10 7.10 -2.91 -0.02 1.08 16 Total: -1.00 -75.72 410.66 1.56 -74.16 By element: Atomic # 1 Polarization: 22.57 SS G_CDS: -0.46 Total: 22.10 kcal Atomic # 6 Polarization: 4.90 SS G_CDS: 6.61 Total: 11.51 kcal Atomic # 7 Polarization: -122.19 SS G_CDS: -6.55 Total: -128.74 kcal Atomic # 8 Polarization: -26.27 SS G_CDS: -0.06 Total: -26.33 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.29 kcal Total: -75.72 1.56 -74.16 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609337211.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.540 kcal (2) G-P(sol) polarization free energy of solvation -75.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds