Wall clock time and date at job start Wed Apr 1 2020 04:08:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47417 * 2 1 4 4 H 1.08996 * 109.49273 * 302.01539 * 3 2 1 5 5 C 1.53053 * 109.48690 * 62.05741 * 3 2 1 6 6 N 1.46953 * 109.36656 * 178.39123 * 5 3 2 7 7 C 1.46900 * 111.00382 * 176.81369 * 6 5 3 8 8 C 1.50702 * 109.46716 * 293.12141 * 7 6 5 9 9 O 1.21280 * 120.00198 * 354.61067 * 8 7 6 10 10 N 1.34781 * 119.99937 * 174.60968 * 8 7 6 11 11 C 1.46498 * 119.99832 * 179.97438 * 10 8 7 12 12 C 1.50701 * 109.46768 * 180.02562 * 11 10 8 13 13 H 1.08004 * 120.00316 * 0.02562 * 12 11 10 14 14 C 1.37883 * 119.99706 * 180.02562 * 12 11 10 15 15 N 1.31506 * 120.00390 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 119.99654 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47103 * 60.00258 * 16 14 12 18 18 H 1.48505 * 109.47053 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.47419 * 300.00165 * 16 14 12 20 20 C 1.46960 * 110.87828 * 300.68257 * 6 5 3 21 21 C 1.53037 * 109.36789 * 59.31977 * 20 6 5 22 22 N 1.46952 * 109.50912 * 181.95712 * 3 2 1 23 23 C 1.46903 * 111.00071 * 56.83678 * 22 3 2 24 24 C 1.50695 * 109.47202 * 185.65549 * 23 22 3 25 25 C 1.38233 * 120.00271 * 269.72412 * 24 23 22 26 26 C 1.38232 * 119.99745 * 179.78880 * 25 24 23 27 27 C 1.38229 * 120.00443 * 0.46462 * 26 25 24 28 28 C 1.38234 * 119.99869 * 359.77086 * 27 26 25 29 29 C 1.38237 * 119.99585 * 90.00549 * 24 23 22 30 30 H 1.09005 * 109.47020 * 184.43741 * 1 2 3 31 31 H 1.08999 * 109.46718 * 304.43316 * 1 2 3 32 32 H 1.08992 * 109.47531 * 64.43164 * 1 2 3 33 33 H 1.09007 * 109.46519 * 240.00288 * 2 1 3 34 34 H 1.08997 * 109.47302 * 120.00781 * 2 1 3 35 35 H 1.08998 * 109.49037 * 58.42285 * 5 3 2 36 36 H 1.09004 * 109.48675 * 298.35786 * 5 3 2 37 37 H 1.08992 * 109.47510 * 173.12470 * 7 6 5 38 38 H 1.08997 * 109.47013 * 53.11499 * 7 6 5 39 39 H 0.96999 * 119.99871 * 0.02562 * 10 8 7 40 40 H 1.08998 * 109.47714 * 300.00575 * 11 10 8 41 41 H 1.09007 * 109.46765 * 60.00905 * 11 10 8 42 42 H 0.97001 * 120.00370 * 179.97438 * 15 14 12 43 43 H 1.09003 * 109.48560 * 179.29179 * 20 6 5 44 44 H 1.09003 * 109.48797 * 299.34646 * 20 6 5 45 45 H 1.08998 * 109.49440 * 181.63336 * 21 20 6 46 46 H 1.08998 * 109.49167 * 61.56613 * 21 20 6 47 47 H 1.09004 * 109.46764 * 305.66226 * 23 22 3 48 48 H 1.09000 * 109.46919 * 65.65562 * 23 22 3 49 49 H 1.08003 * 119.99798 * 0.02562 * 25 24 23 50 50 H 1.08005 * 119.99706 * 180.25564 * 26 25 24 51 51 H 1.08003 * 120.00389 * 179.78526 * 27 26 25 52 52 H 1.08003 * 119.99865 * 179.97438 * 28 27 26 53 53 H 1.07997 * 120.00271 * 359.97131 * 29 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6477 1.9669 -0.8712 5 6 1.5728 2.1492 1.2746 6 7 2.0963 3.5222 1.2903 7 6 1.6069 4.2590 2.4632 8 6 0.1186 4.4629 2.3431 9 8 -0.4604 4.1241 1.3327 10 7 -0.5692 5.0219 3.3586 11 6 -2.0159 5.2206 3.2416 12 6 -2.5388 5.8584 4.5029 13 1 -1.8613 6.0927 5.3106 14 6 -3.8824 6.1429 4.6256 15 7 -4.7076 5.8572 3.6423 16 14 -4.5305 6.9342 6.1887 17 1 -3.8660 8.2466 6.3914 18 1 -5.9973 7.1344 6.0707 19 1 -4.2438 6.0500 7.3468 20 6 3.5651 3.5234 1.2429 21 6 4.0323 2.8167 -0.0316 22 7 3.5088 1.4436 -0.0473 23 6 3.9984 0.7069 -1.2202 24 6 5.5011 0.6103 -1.1615 25 6 6.2801 1.5904 -1.7473 26 6 7.6586 1.5040 -1.6896 27 6 8.2580 0.4325 -1.0545 28 6 7.4789 -0.5502 -0.4728 29 6 6.1004 -0.4616 -0.5268 30 1 -0.3633 -1.0246 0.0795 31 1 -0.3633 0.5811 0.8476 32 1 -0.3634 0.4435 -0.9269 33 1 1.8932 -0.5138 -0.8901 34 1 1.8934 -0.5139 0.8899 35 1 1.9425 1.6091 2.1463 36 1 0.4834 2.1751 1.2976 37 1 2.1031 5.2279 2.5168 38 1 1.8237 3.6891 3.3667 39 1 -0.1061 5.2932 4.1666 40 1 -2.2259 5.8705 2.3921 41 1 -2.5039 4.2575 3.0917 42 1 -5.6528 6.0570 3.7288 43 1 3.9281 4.5512 1.2429 44 1 3.9575 2.9989 2.1142 45 1 5.1217 2.7908 -0.0547 46 1 3.6626 3.3568 -0.9033 47 1 3.5696 -0.2953 -1.2247 48 1 3.7033 1.2324 -2.1284 49 1 5.8118 2.4257 -2.2468 50 1 8.2672 2.2719 -2.1438 51 1 9.3349 0.3632 -1.0124 52 1 7.9472 -1.3875 0.0231 53 1 5.4918 -1.2294 -0.0726 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000759891779.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:08:17 Heat of formation + Delta-G solvation = -23.286496 kcal Electronic energy + Delta-G solvation = -30395.729350 eV Core-core repulsion = 26459.017365 eV Total energy + Delta-G solvation = -3936.711985 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.25459 -40.39330 -39.48044 -36.75790 -36.00529 -35.04121 -34.32860 -32.54768 -31.72584 -30.61029 -30.13648 -28.82960 -26.83851 -25.65310 -24.87687 -23.97724 -23.36892 -22.13640 -21.87268 -21.30962 -20.62785 -18.92681 -17.73275 -17.50195 -17.45378 -16.92115 -16.80474 -16.45995 -16.16963 -16.08881 -15.90312 -15.51312 -15.22951 -15.14048 -14.89077 -14.61066 -14.35313 -14.24814 -14.10567 -13.96342 -13.80851 -13.55794 -13.25723 -13.20896 -12.93931 -12.86648 -12.71117 -12.60291 -12.54794 -12.27345 -12.23383 -12.02396 -11.83084 -11.72758 -11.54710 -11.50578 -11.28098 -10.78598 -10.63215 -9.79396 -9.75144 -9.67376 -9.37626 -9.22266 -8.28744 -6.45510 0.46341 0.56599 1.42754 1.46914 1.55055 1.81543 2.26945 2.45989 2.70322 3.02648 3.05801 3.14244 3.73062 3.79497 3.90898 3.96617 4.03639 4.16022 4.19009 4.20941 4.28675 4.31934 4.34424 4.38217 4.40571 4.42197 4.53094 4.57027 4.65444 4.72574 4.74894 4.81711 4.83436 4.90205 4.99381 5.02437 5.07073 5.12042 5.17200 5.22270 5.25307 5.27608 5.37578 5.49676 5.61708 5.68616 5.70260 5.74738 5.84462 5.87570 5.95387 6.11304 6.15868 6.19402 6.65580 6.96844 7.24082 7.54905 8.83097 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.023060 B = 0.001942 C = 0.001854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.950149 B =14416.785044 C =15101.722272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.108 4.108 3 C 0.097 3.903 4 H 0.028 0.972 5 C 0.066 3.934 6 N -0.542 5.542 7 C 0.050 3.950 8 C 0.494 3.506 9 O -0.582 6.582 10 N -0.711 5.711 11 C 0.270 3.730 12 C -0.557 4.557 13 H 0.084 0.916 14 C 0.003 3.997 15 N -0.931 5.931 16 Si 0.985 3.015 17 H -0.262 1.262 18 H -0.286 1.286 19 H -0.262 1.262 20 C 0.060 3.940 21 C 0.060 3.940 22 N -0.527 5.527 23 C 0.090 3.910 24 C -0.085 4.085 25 C -0.125 4.125 26 C -0.127 4.127 27 C -0.128 4.128 28 C -0.128 4.128 29 C -0.110 4.110 30 H 0.072 0.928 31 H 0.037 0.963 32 H 0.046 0.954 33 H 0.082 0.918 34 H 0.074 0.926 35 H 0.038 0.962 36 H 0.066 0.934 37 H 0.129 0.871 38 H 0.082 0.918 39 H 0.407 0.593 40 H -0.015 1.015 41 H -0.015 1.015 42 H 0.268 0.732 43 H 0.096 0.904 44 H 0.047 0.953 45 H 0.096 0.904 46 H 0.030 0.970 47 H 0.096 0.904 48 H 0.037 0.963 49 H 0.121 0.879 50 H 0.136 0.864 51 H 0.139 0.861 52 H 0.137 0.863 53 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.613 -12.313 -7.062 31.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.146 4.146 3 C -0.011 4.011 4 H 0.046 0.954 5 C -0.062 4.062 6 N -0.267 5.267 7 C -0.081 4.081 8 C 0.281 3.719 9 O -0.462 6.462 10 N -0.362 5.362 11 C 0.148 3.852 12 C -0.595 4.595 13 H 0.102 0.898 14 C -0.197 4.197 15 N -0.569 5.569 16 Si 0.808 3.192 17 H -0.186 1.186 18 H -0.211 1.211 19 H -0.187 1.187 20 C -0.067 4.067 21 C -0.068 4.068 22 N -0.252 5.252 23 C -0.037 4.037 24 C -0.086 4.086 25 C -0.143 4.143 26 C -0.145 4.145 27 C -0.146 4.146 28 C -0.146 4.146 29 C -0.128 4.128 30 H 0.091 0.909 31 H 0.057 0.943 32 H 0.065 0.935 33 H 0.100 0.900 34 H 0.093 0.907 35 H 0.056 0.944 36 H 0.085 0.915 37 H 0.146 0.854 38 H 0.100 0.900 39 H 0.243 0.757 40 H 0.003 0.997 41 H 0.003 0.997 42 H 0.077 0.923 43 H 0.114 0.886 44 H 0.066 0.934 45 H 0.114 0.886 46 H 0.048 0.952 47 H 0.114 0.886 48 H 0.056 0.944 49 H 0.139 0.861 50 H 0.154 0.846 51 H 0.157 0.843 52 H 0.155 0.845 53 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 27.000 -12.529 -7.833 30.779 hybrid contribution -0.988 0.689 0.674 1.380 sum 26.012 -11.840 -7.159 29.463 Atomic orbital electron populations 1.21789 0.95889 1.02099 1.01250 1.21557 0.95251 0.94421 1.03344 1.21548 0.87050 0.96336 0.96198 0.95439 1.22221 0.99844 0.87214 0.96911 1.61739 1.09541 1.15169 1.40233 1.21930 0.90431 1.02122 0.93606 1.21324 0.90751 0.77129 0.82698 1.90624 1.72137 1.52052 1.31435 1.46198 1.09623 1.61476 1.18874 1.18471 0.76654 0.93920 0.96205 1.21606 0.94349 1.41830 1.01708 0.89805 1.26078 0.96971 0.95874 1.00744 1.70132 1.04574 1.47866 1.34338 0.85209 0.76854 0.79103 0.78058 1.18642 1.21130 1.18651 1.22255 0.85368 1.01396 0.97709 1.22205 1.00396 0.87610 0.96593 1.62258 1.07481 1.14897 1.40564 1.21143 0.91504 0.99940 0.91079 1.19762 0.94566 0.95566 0.98693 1.21219 0.94390 0.98597 1.00107 1.21374 0.94581 0.98918 0.99664 1.21454 1.00911 0.94346 0.97857 1.21426 0.93710 0.99701 0.99776 1.21188 0.95236 0.98018 0.98369 0.90931 0.94338 0.93462 0.89998 0.90703 0.94358 0.91547 0.85355 0.89998 0.75717 0.99736 0.99679 0.92284 0.88581 0.93429 0.88568 0.95191 0.88607 0.94443 0.86099 0.84564 0.84346 0.84501 0.85513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.69 9.72 71.98 0.70 -2.99 16 2 C -0.11 -2.28 5.18 30.59 0.16 -2.12 16 3 C 0.10 2.46 2.06 44.92 0.09 2.55 16 4 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 5 C 0.07 1.96 4.20 86.31 0.36 2.32 16 6 N -0.54 -15.51 4.40 -900.31 -3.96 -19.47 16 7 C 0.05 1.39 5.45 85.56 0.47 1.86 16 8 C 0.49 20.04 7.41 87.66 0.65 20.69 16 9 O -0.58 -29.25 14.68 -3.03 -0.04 -29.30 16 10 N -0.71 -30.27 5.55 -466.78 -2.59 -32.86 16 11 C 0.27 15.03 5.43 85.63 0.46 15.49 16 12 C -0.56 -30.52 9.28 25.60 0.24 -30.28 16 13 H 0.08 4.12 7.60 -2.91 -0.02 4.10 16 14 C 0.00 0.16 5.46 84.66 0.46 0.63 16 15 N -0.93 -56.62 13.29 21.45 0.28 -56.34 16 16 Si 0.98 42.49 29.54 68.60 2.03 44.52 16 17 H -0.26 -10.68 7.11 99.48 0.71 -9.98 16 18 H -0.29 -12.26 7.11 99.48 0.71 -11.55 16 19 H -0.26 -10.68 7.11 99.48 0.71 -9.98 16 20 C 0.06 1.28 5.60 86.30 0.48 1.77 16 21 C 0.06 1.23 5.16 86.30 0.45 1.68 16 22 N -0.53 -11.13 4.55 -875.06 -3.98 -15.11 16 23 C 0.09 1.61 4.83 85.55 0.41 2.02 16 24 C -0.09 -1.42 4.75 -19.87 -0.09 -1.52 16 25 C -0.12 -1.92 7.85 22.27 0.17 -1.75 16 26 C -0.13 -1.69 10.05 22.27 0.22 -1.47 16 27 C -0.13 -1.59 10.05 22.27 0.22 -1.37 16 28 C -0.13 -1.70 10.05 22.27 0.22 -1.48 16 29 C -0.11 -1.69 9.70 22.27 0.22 -1.48 16 30 H 0.07 1.46 8.14 -2.38 -0.02 1.44 16 31 H 0.04 1.12 6.30 -2.39 -0.02 1.11 16 32 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.08 1.43 6.13 -2.38 -0.01 1.42 16 34 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 35 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.07 2.47 4.43 -2.39 -0.01 2.46 16 37 H 0.13 2.86 8.01 -2.39 -0.02 2.84 16 38 H 0.08 1.92 8.11 -2.39 -0.02 1.90 16 39 H 0.41 14.19 8.32 -92.71 -0.77 13.42 16 40 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 41 H -0.01 -0.92 8.14 -2.38 -0.02 -0.94 16 42 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 43 H 0.10 1.71 8.06 -2.39 -0.02 1.69 16 44 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 45 H 0.10 1.74 5.88 -2.39 -0.01 1.72 16 46 H 0.03 0.69 8.14 -2.39 -0.02 0.67 16 47 H 0.10 1.54 5.84 -2.38 -0.01 1.52 16 48 H 0.04 0.70 8.08 -2.39 -0.02 0.68 16 49 H 0.12 1.74 8.03 -2.91 -0.02 1.71 16 50 H 0.14 1.28 8.06 -2.91 -0.02 1.25 16 51 H 0.14 1.11 8.06 -2.91 -0.02 1.09 16 52 H 0.14 1.26 8.06 -2.91 -0.02 1.24 16 53 H 0.13 1.74 8.06 -2.91 -0.02 1.72 16 Total: -1.00 -73.19 414.17 -2.24 -75.44 By element: Atomic # 1 Polarization: 28.44 SS G_CDS: 0.12 Total: 28.56 kcal Atomic # 6 Polarization: -1.34 SS G_CDS: 5.90 Total: 4.56 kcal Atomic # 7 Polarization: -113.52 SS G_CDS: -10.25 Total: -123.77 kcal Atomic # 8 Polarization: -29.25 SS G_CDS: -0.04 Total: -29.30 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 2.03 Total: 44.52 kcal Total: -73.19 -2.24 -75.44 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000759891779.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.149 kcal (2) G-P(sol) polarization free energy of solvation -73.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds