Wall clock time and date at job start Wed Apr 1 2020 03:24:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52997 * 109.47511 * 2 1 4 4 C 1.53011 * 109.47035 * 240.00350 * 2 1 3 5 5 H 1.09007 * 109.48844 * 304.94649 * 4 2 1 6 6 C 1.53239 * 109.49141 * 64.99716 * 4 2 1 7 7 N 1.47081 * 108.51586 * 173.78869 * 6 4 2 8 8 C 1.34780 * 120.87719 * 128.84422 * 7 6 4 9 9 O 1.21584 * 120.00008 * 354.76820 * 8 7 6 10 10 N 1.34772 * 119.99728 * 174.77839 * 8 7 6 11 11 C 1.46505 * 119.99927 * 184.97107 * 10 8 7 12 12 C 1.50702 * 109.47111 * 179.97438 * 11 10 8 13 13 H 1.07995 * 119.99801 * 0.02562 * 12 11 10 14 14 C 1.37879 * 119.99490 * 180.02562 * 12 11 10 15 15 N 1.31512 * 120.00485 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 119.99429 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.47580 * 90.00071 * 16 14 12 18 18 H 1.48507 * 109.46939 * 209.99933 * 16 14 12 19 19 H 1.48498 * 109.47017 * 329.99521 * 16 14 12 20 20 C 1.47079 * 118.24304 * 308.81669 * 7 6 4 21 21 C 1.53243 * 108.51507 * 51.18524 * 20 7 6 22 22 N 1.46898 * 109.48990 * 184.86947 * 4 2 1 23 23 C 1.46894 * 111.00292 * 52.78467 * 22 4 2 24 24 C 1.50701 * 109.47075 * 169.99676 * 23 22 4 25 25 C 1.38240 * 120.00144 * 269.72928 * 24 23 22 26 26 C 1.38228 * 119.99791 * 179.76610 * 25 24 23 27 27 C 1.38237 * 120.00482 * 0.48341 * 26 25 24 28 28 C 1.38241 * 119.99333 * 359.79270 * 27 26 25 29 29 C 1.38225 * 120.00385 * 359.95286 * 28 27 26 30 30 H 1.09002 * 109.47817 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47272 * 299.99904 * 1 2 3 32 32 H 1.09000 * 109.47363 * 59.99603 * 1 2 3 33 33 H 1.09000 * 109.46911 * 120.00682 * 2 1 3 34 34 H 1.09000 * 109.47131 * 300.00539 * 3 2 1 35 35 H 1.09002 * 109.46530 * 60.00247 * 3 2 1 36 36 H 1.08995 * 109.47208 * 179.97438 * 3 2 1 37 37 H 1.08997 * 109.63189 * 293.49941 * 6 4 2 38 38 H 1.08998 * 109.62400 * 53.89062 * 6 4 2 39 39 H 0.97001 * 120.00419 * 4.97066 * 10 8 7 40 40 H 1.08995 * 109.46963 * 300.00340 * 11 10 8 41 41 H 1.09003 * 109.46682 * 59.99866 * 11 10 8 42 42 H 0.97001 * 120.00379 * 180.02562 * 15 14 12 43 43 H 1.08997 * 109.62989 * 170.89567 * 20 7 6 44 44 H 1.09000 * 109.63039 * 291.28763 * 20 7 6 45 45 H 1.08996 * 109.49701 * 66.13646 * 21 20 7 46 46 H 1.09004 * 109.49107 * 186.20878 * 21 20 7 47 47 H 1.08999 * 109.47196 * 289.99725 * 23 22 4 48 48 H 1.09006 * 109.47054 * 49.99810 * 23 22 4 49 49 H 1.07996 * 119.99959 * 359.97438 * 25 24 23 50 50 H 1.08000 * 120.00325 * 180.25233 * 26 25 24 51 51 H 1.08001 * 120.00406 * 179.76635 * 27 26 25 52 52 H 1.08001 * 119.99828 * 179.97438 * 28 27 26 53 53 H 1.07999 * 120.00684 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7212 -1.2494 5 1 1.6062 -1.7202 -1.2951 6 6 1.6347 0.0699 -2.4977 7 7 2.2602 -0.5576 -3.6717 8 6 1.5269 -0.8837 -4.7546 9 8 0.3188 -0.7481 -4.7340 10 7 2.1328 -1.3603 -5.8600 11 6 1.3510 -1.6119 -7.0732 12 6 2.2584 -2.1369 -8.1558 13 1 3.3120 -2.2701 -7.9597 14 6 1.7434 -2.4469 -9.3966 15 7 0.4602 -2.2851 -9.6353 16 14 2.8681 -3.0983 -10.7384 17 1 2.9200 -4.5805 -10.6646 18 1 2.3448 -2.6869 -12.0659 19 1 4.2335 -2.5452 -10.5515 20 6 3.7070 -0.8192 -3.6331 21 6 4.0304 -1.5753 -2.3400 22 7 3.5042 -0.8241 -1.1925 23 6 3.9410 -1.4247 0.0749 24 6 5.4128 -1.7397 0.0007 25 6 5.8331 -2.9749 -0.4562 26 6 7.1833 -3.2620 -0.5289 27 6 8.1130 -2.3178 -0.1353 28 6 7.6925 -1.0847 0.3270 29 6 6.3425 -0.7956 0.3947 30 1 -0.3635 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 1.8932 -0.5139 0.8899 34 1 1.6766 1.9563 -0.8899 35 1 1.6767 1.9562 0.8901 36 1 3.1300 1.4424 0.0005 37 1 0.5504 0.0516 -2.6068 38 1 1.9761 1.1008 -2.4045 39 1 3.0867 -1.5367 -5.8525 40 1 0.5758 -2.3478 -6.8597 41 1 0.8881 -0.6829 -7.4062 42 1 0.0979 -2.5036 -10.5081 43 1 3.9926 -1.4252 -4.4928 44 1 4.2506 0.1253 -3.6540 45 1 3.5695 -2.5625 -2.3708 46 1 5.1108 -1.6809 -2.2410 47 1 3.7600 -0.7243 0.8903 48 1 3.3814 -2.3429 0.2537 49 1 5.1067 -3.7142 -0.7596 50 1 7.5118 -4.2255 -0.8897 51 1 9.1678 -2.5436 -0.1885 52 1 8.4188 -0.3471 0.6349 53 1 6.0139 0.1679 0.7555 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000875540295.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:24:24 Heat of formation + Delta-G solvation = -12.712188 kcal Electronic energy + Delta-G solvation = -31237.612350 eV Core-core repulsion = 27301.358901 eV Total energy + Delta-G solvation = -3936.253449 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -41.70636 -40.49439 -39.36689 -36.47878 -36.22016 -35.63875 -34.31454 -32.25175 -31.73659 -30.91808 -29.70863 -28.26930 -27.94899 -25.68886 -25.38746 -24.41068 -23.47166 -22.77133 -21.85217 -20.99370 -19.95412 -19.56531 -18.08912 -17.75473 -17.40893 -16.80976 -16.64112 -16.49991 -16.26999 -16.14194 -15.85161 -15.47263 -15.32729 -14.94660 -14.84125 -14.60809 -14.22570 -14.18237 -14.09651 -13.86631 -13.69439 -13.60213 -13.28273 -13.16740 -12.92026 -12.81567 -12.71750 -12.67927 -12.53678 -12.19906 -12.15861 -11.87725 -11.80721 -11.71515 -11.52550 -11.48217 -11.41855 -11.11691 -10.81416 -10.08793 -9.75059 -9.70485 -9.48760 -9.17947 -8.29108 -6.46030 0.44882 0.56834 1.42546 1.45768 1.56613 1.72096 2.16523 2.37899 2.69058 3.05657 3.08812 3.14506 3.70079 3.74313 3.79300 4.00340 4.01156 4.11481 4.16708 4.22225 4.23872 4.31476 4.35789 4.38877 4.50101 4.62650 4.63198 4.70289 4.74321 4.79873 4.81718 4.86689 4.87698 5.00628 5.03858 5.08063 5.15416 5.19244 5.22798 5.24511 5.25076 5.42732 5.45924 5.51505 5.57024 5.61893 5.68848 5.69698 5.74380 5.82990 5.95783 6.00221 6.13869 6.18194 6.65055 7.13825 7.24102 7.65582 8.83377 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.009845 B = 0.002938 C = 0.002350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2843.314466 B = 9527.465279 C =11909.585933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.081 4.081 3 C -0.139 4.139 4 C 0.086 3.914 5 H 0.025 0.975 6 C 0.137 3.863 7 N -0.630 5.630 8 C 0.693 3.307 9 O -0.647 6.647 10 N -0.724 5.724 11 C 0.287 3.713 12 C -0.555 4.555 13 H 0.082 0.918 14 C 0.005 3.995 15 N -0.931 5.931 16 Si 0.987 3.013 17 H -0.270 1.270 18 H -0.283 1.283 19 H -0.255 1.255 20 C 0.114 3.886 21 C 0.048 3.952 22 N -0.516 5.516 23 C 0.096 3.904 24 C -0.091 4.091 25 C -0.126 4.126 26 C -0.130 4.130 27 C -0.127 4.127 28 C -0.127 4.127 29 C -0.104 4.104 30 H 0.046 0.954 31 H 0.075 0.925 32 H 0.045 0.955 33 H 0.089 0.911 34 H 0.047 0.953 35 H 0.064 0.936 36 H 0.068 0.932 37 H 0.071 0.929 38 H 0.086 0.914 39 H 0.401 0.599 40 H -0.017 1.017 41 H -0.015 1.015 42 H 0.269 0.731 43 H 0.083 0.917 44 H 0.088 0.912 45 H 0.024 0.976 46 H 0.106 0.894 47 H 0.103 0.897 48 H 0.037 0.963 49 H 0.115 0.885 50 H 0.131 0.869 51 H 0.137 0.863 52 H 0.139 0.861 53 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.958 3.155 26.227 30.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.100 4.100 3 C -0.196 4.196 4 C -0.024 4.024 5 H 0.043 0.957 6 C 0.014 3.986 7 N -0.368 5.368 8 C 0.394 3.606 9 O -0.529 6.529 10 N -0.379 5.379 11 C 0.164 3.836 12 C -0.593 4.593 13 H 0.100 0.900 14 C -0.195 4.195 15 N -0.569 5.569 16 Si 0.809 3.191 17 H -0.196 1.196 18 H -0.208 1.208 19 H -0.178 1.178 20 C -0.009 4.009 21 C -0.081 4.081 22 N -0.240 5.240 23 C -0.031 4.031 24 C -0.091 4.091 25 C -0.145 4.145 26 C -0.148 4.148 27 C -0.145 4.145 28 C -0.145 4.145 29 C -0.123 4.123 30 H 0.065 0.935 31 H 0.094 0.906 32 H 0.065 0.935 33 H 0.107 0.893 34 H 0.066 0.934 35 H 0.083 0.917 36 H 0.087 0.913 37 H 0.089 0.911 38 H 0.104 0.896 39 H 0.239 0.761 40 H 0.001 0.999 41 H 0.003 0.997 42 H 0.078 0.922 43 H 0.101 0.899 44 H 0.106 0.894 45 H 0.043 0.957 46 H 0.124 0.876 47 H 0.121 0.879 48 H 0.056 0.944 49 H 0.133 0.867 50 H 0.149 0.851 51 H 0.155 0.845 52 H 0.157 0.843 53 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 15.133 3.721 26.041 30.348 hybrid contribution -0.255 -1.446 -1.115 1.844 sum 14.878 2.275 24.926 29.118 Atomic orbital electron populations 1.21901 0.95009 1.01609 1.02394 1.21150 0.95453 0.97624 0.95787 1.21792 1.02012 0.94170 1.01592 1.21993 0.87587 0.97302 0.95486 0.95703 1.21764 0.98064 0.96738 0.82036 1.47395 1.09038 1.65078 1.15294 1.16243 0.84853 0.78409 0.81090 1.90810 1.14578 1.63672 1.83883 1.45479 1.12435 1.68563 1.11457 1.18405 0.90968 0.93521 0.80729 1.21567 0.95711 1.45258 0.96757 0.89974 1.26074 0.96855 0.95213 1.01366 1.70144 1.14378 1.48254 1.24124 0.85134 0.78655 0.78545 0.76734 1.19574 1.20835 1.17830 1.21903 0.79393 1.01412 0.98215 1.22521 1.01642 0.94118 0.89795 1.62093 1.08868 1.51232 1.01812 1.21158 0.91045 0.98416 0.92454 1.19794 0.95109 0.94314 0.99929 1.21207 0.96448 0.96739 1.00091 1.21348 0.92991 1.00321 1.00160 1.21454 1.00436 0.93912 0.98660 1.21447 0.96140 0.97375 0.99511 1.21212 0.92830 0.99155 0.99055 0.93473 0.90575 0.93539 0.89285 0.93411 0.91740 0.91301 0.91105 0.89616 0.76134 0.99864 0.99701 0.92193 0.89928 0.89398 0.95740 0.87568 0.87871 0.94432 0.86673 0.85075 0.84537 0.84315 0.84759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.71 8.95 71.98 0.64 -2.06 16 2 C -0.08 -1.34 2.28 -10.79 -0.02 -1.36 16 3 C -0.14 -2.04 8.61 71.98 0.62 -1.42 16 4 C 0.09 1.90 1.73 45.00 0.08 1.98 16 5 H 0.02 0.67 8.14 -2.38 -0.02 0.65 16 6 C 0.14 3.93 5.17 86.35 0.45 4.37 16 7 N -0.63 -21.12 3.01 -835.94 -2.52 -23.64 16 8 C 0.69 31.41 8.31 179.05 1.49 32.90 16 9 O -0.65 -35.33 15.80 -3.98 -0.06 -35.39 16 10 N -0.72 -33.47 5.46 -482.29 -2.63 -36.11 16 11 C 0.29 16.53 5.43 85.63 0.47 17.00 16 12 C -0.56 -31.03 9.28 25.60 0.24 -30.79 16 13 H 0.08 4.15 7.60 -2.91 -0.02 4.13 16 14 C 0.00 0.26 5.46 84.66 0.46 0.72 16 15 N -0.93 -57.10 13.29 21.45 0.28 -56.82 16 16 Si 0.99 42.82 29.54 68.60 2.03 44.85 16 17 H -0.27 -11.32 7.11 99.48 0.71 -10.62 16 18 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 19 H -0.25 -10.25 7.11 99.48 0.71 -9.54 16 20 C 0.11 2.88 6.54 86.35 0.56 3.45 16 21 C 0.05 1.02 4.78 86.38 0.41 1.44 16 22 N -0.52 -9.79 4.07 -874.54 -3.56 -13.35 16 23 C 0.10 1.47 4.47 85.56 0.38 1.86 16 24 C -0.09 -1.41 4.11 -19.86 -0.08 -1.49 16 25 C -0.13 -2.03 7.79 22.27 0.17 -1.86 16 26 C -0.13 -1.89 10.05 22.27 0.22 -1.67 16 27 C -0.13 -1.65 10.05 22.27 0.22 -1.42 16 28 C -0.13 -1.61 10.05 22.27 0.22 -1.38 16 29 C -0.10 -1.43 9.70 22.27 0.22 -1.22 16 30 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.05 0.98 6.72 -2.39 -0.02 0.97 16 33 H 0.09 1.21 6.26 -2.39 -0.01 1.20 16 34 H 0.05 0.82 6.21 -2.39 -0.01 0.81 16 35 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 36 H 0.07 0.99 7.75 -2.39 -0.02 0.98 16 37 H 0.07 2.42 5.81 -2.39 -0.01 2.40 16 38 H 0.09 2.23 6.02 -2.39 -0.01 2.21 16 39 H 0.40 15.67 5.86 -92.71 -0.54 15.12 16 40 H -0.02 -1.08 8.14 -2.39 -0.02 -1.10 16 41 H -0.01 -0.96 8.14 -2.39 -0.02 -0.98 16 42 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 43 H 0.08 2.09 5.74 -2.39 -0.01 2.08 16 44 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 45 H 0.02 0.59 8.14 -2.39 -0.02 0.57 16 46 H 0.11 2.03 5.55 -2.39 -0.01 2.02 16 47 H 0.10 1.29 6.68 -2.39 -0.02 1.27 16 48 H 0.04 0.62 8.02 -2.38 -0.02 0.61 16 49 H 0.12 1.86 8.06 -2.91 -0.02 1.83 16 50 H 0.13 1.54 8.06 -2.91 -0.02 1.52 16 51 H 0.14 1.24 8.06 -2.91 -0.02 1.22 16 52 H 0.14 1.19 8.06 -2.91 -0.02 1.16 16 53 H 0.13 1.49 8.06 -2.91 -0.02 1.47 16 Total: -1.00 -74.28 407.19 0.66 -73.62 By element: Atomic # 1 Polarization: 27.45 SS G_CDS: 0.36 Total: 27.81 kcal Atomic # 6 Polarization: 12.27 SS G_CDS: 6.75 Total: 19.02 kcal Atomic # 7 Polarization: -121.49 SS G_CDS: -8.42 Total: -129.91 kcal Atomic # 8 Polarization: -35.33 SS G_CDS: -0.06 Total: -35.39 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.85 kcal Total: -74.28 0.66 -73.62 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000875540295.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.912 kcal (2) G-P(sol) polarization free energy of solvation -74.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds