Wall clock time and date at job start Wed Apr 1 2020 04:19:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52993 * 109.47301 * 2 1 4 4 H 1.08998 * 109.47566 * 54.99796 * 3 2 1 5 5 C 1.50700 * 109.47278 * 175.00179 * 3 2 1 6 6 O 1.21282 * 120.00548 * 119.99812 * 5 3 2 7 7 N 1.34784 * 119.99736 * 299.99699 * 5 3 2 8 8 C 1.39921 * 120.00109 * 185.13076 * 7 5 3 9 9 C 1.38874 * 120.07000 * 213.07781 * 8 7 5 10 10 C 1.38117 * 119.92706 * 180.29538 * 9 8 7 11 11 C 1.38276 * 120.06711 * 359.47323 * 10 9 8 12 12 C 1.50708 * 119.92762 * 180.27520 * 11 10 9 13 13 C 1.38277 * 120.14710 * 0.50706 * 11 10 9 14 14 C 1.38109 * 120.07025 * 359.76926 * 13 11 10 15 15 N 1.46904 * 109.47130 * 294.99783 * 3 2 1 16 16 C 1.46960 * 110.99928 * 298.80258 * 15 3 2 17 17 C 1.53046 * 109.36232 * 176.81068 * 16 15 3 18 18 N 1.46953 * 109.36483 * 58.40266 * 17 16 15 19 19 C 1.46904 * 111.00040 * 176.80983 * 18 17 16 20 20 C 1.50699 * 109.47089 * 59.24683 * 19 18 17 21 21 H 1.08007 * 120.00441 * 355.42954 * 20 19 18 22 22 C 1.37883 * 120.00242 * 175.42660 * 20 19 18 23 23 N 1.31511 * 119.99624 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00316 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47081 * 89.99828 * 24 22 20 26 26 H 1.48500 * 109.47006 * 210.00655 * 24 22 20 27 27 H 1.48504 * 109.46749 * 330.00140 * 24 22 20 28 28 C 1.46959 * 110.87989 * 300.67265 * 18 17 16 29 29 C 1.46953 * 111.00040 * 175.00360 * 15 3 2 30 30 H 1.08999 * 109.47483 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46933 * 300.00499 * 1 2 3 32 32 H 1.08999 * 109.47047 * 59.99811 * 1 2 3 33 33 H 1.09000 * 109.46933 * 239.99501 * 2 1 3 34 34 H 1.09004 * 109.46586 * 119.99631 * 2 1 3 35 35 H 0.96998 * 119.99559 * 5.12647 * 7 5 3 36 36 H 1.07994 * 120.03546 * 0.02893 * 9 8 7 37 37 H 1.08001 * 119.96214 * 179.70071 * 10 9 8 38 38 H 1.08997 * 109.46988 * 270.23440 * 12 11 10 39 39 H 1.09002 * 109.46516 * 30.23160 * 12 11 10 40 40 H 1.08997 * 109.47222 * 150.23223 * 12 11 10 41 41 H 1.08003 * 119.97136 * 179.74132 * 13 11 10 42 42 H 1.08006 * 120.04003 * 179.97438 * 14 13 11 43 43 H 1.09006 * 109.48432 * 296.77917 * 16 15 3 44 44 H 1.08997 * 109.48631 * 56.84017 * 16 15 3 45 45 H 1.08991 * 109.49228 * 298.43076 * 17 16 15 46 46 H 1.09009 * 109.50564 * 178.37625 * 17 16 15 47 47 H 1.08998 * 109.47630 * 179.24792 * 19 18 17 48 48 H 1.08997 * 109.47231 * 299.25160 * 19 18 17 49 49 H 0.97001 * 120.00232 * 179.97438 * 23 22 20 50 50 H 1.08997 * 109.48955 * 299.35769 * 28 18 17 51 51 H 1.08998 * 109.48600 * 179.28675 * 28 18 17 52 52 H 1.09002 * 109.48825 * 303.15352 * 29 15 3 53 53 H 1.08997 * 109.49421 * 63.19873 * 29 15 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4442 0.1238 6 8 4.2217 1.9434 -0.7478 7 7 4.1298 0.8910 1.2032 8 6 5.5155 0.9869 1.3712 9 6 6.2149 -0.0436 1.9857 10 6 7.5819 0.0568 2.1556 11 6 8.2556 1.1770 1.7047 12 6 9.7481 1.2805 1.8861 13 6 7.5623 2.2046 1.0921 14 6 6.1945 2.1129 0.9243 15 7 1.6514 2.0992 -1.2553 16 6 2.2439 1.4149 -2.4130 17 6 1.7524 2.0791 -3.7013 18 7 2.1220 3.5013 -3.6879 19 6 1.7335 4.1581 -4.9431 20 6 0.2442 4.0322 -5.1359 21 1 -0.3436 3.4533 -4.4388 22 6 -0.3682 4.6561 -6.2021 23 7 0.3475 5.3605 -7.0512 24 14 -2.2144 4.5006 -6.4407 25 1 -2.9011 5.6033 -5.7211 26 1 -2.5348 4.5790 -7.8886 27 1 -2.6749 3.1956 -5.9018 28 6 1.5295 4.1857 -2.5302 29 6 2.0211 3.5214 -1.2419 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 1.8933 -0.5139 -0.8899 34 1 1.8932 -0.5138 0.8901 35 1 3.5921 0.4265 1.8635 36 1 5.6898 -0.9206 2.3342 37 1 8.1256 -0.7422 2.6377 38 1 9.9658 1.7541 2.8434 39 1 10.1865 0.2827 1.8664 40 1 10.1715 1.8794 1.0798 41 1 8.0907 3.0801 0.7448 42 1 5.6533 2.9161 0.4461 43 1 3.3304 1.4844 -2.3596 44 1 1.9455 0.3665 -2.4076 45 1 0.6685 1.9857 -3.7679 46 1 2.2129 1.5918 -4.5607 47 1 2.0065 5.2125 -4.9013 48 1 2.2492 3.6821 -5.7771 49 1 -0.0832 5.7992 -7.8016 50 1 0.4430 4.1161 -2.5835 51 1 1.8279 5.2340 -2.5355 52 1 1.5602 4.0089 -0.3827 53 1 3.1050 3.6149 -1.1749 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000878312395.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:19:20 Heat of formation + Delta-G solvation = -14.489695 kcal Electronic energy + Delta-G solvation = -31208.398876 eV Core-core repulsion = 27272.068348 eV Total energy + Delta-G solvation = -3936.330527 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -42.09608 -40.40341 -39.19652 -37.08790 -36.18602 -34.86498 -33.52647 -32.39559 -31.87087 -31.71974 -29.90591 -28.30810 -27.00452 -25.77850 -24.64862 -23.99687 -23.51322 -22.98753 -22.00745 -21.12924 -20.66725 -18.95095 -18.45753 -17.97618 -17.37583 -16.72020 -16.46857 -16.31916 -16.12271 -15.85804 -15.66538 -15.50862 -15.26200 -15.08870 -14.82701 -14.59556 -14.49365 -14.33595 -13.97825 -13.68152 -13.53286 -13.35651 -13.16529 -12.96970 -12.95586 -12.85032 -12.66200 -12.49371 -12.46094 -12.24208 -12.11741 -12.00659 -11.89526 -11.83135 -11.77160 -11.49987 -11.28390 -11.27442 -10.99122 -10.61925 -9.87994 -9.18608 -8.93710 -8.92281 -8.15241 -6.36021 0.28098 0.46729 1.35821 1.36812 1.48032 1.52912 2.04239 2.36885 2.83462 2.85591 3.08243 3.38420 3.61727 3.83840 3.96728 3.98460 4.03405 4.10603 4.13131 4.31871 4.41451 4.42680 4.49211 4.51615 4.54176 4.60288 4.63841 4.69289 4.76420 4.84729 4.86326 4.87251 4.94290 5.06768 5.09307 5.15339 5.15929 5.18017 5.23261 5.28939 5.30735 5.32548 5.36755 5.41201 5.59688 5.60855 5.71430 5.71852 5.97184 5.99319 6.04943 6.11969 6.27856 6.44416 6.54223 6.84736 7.14483 7.35324 8.86957 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.016666 B = 0.002500 C = 0.002253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1679.642049 B =11195.756927 C =12426.858543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.107 4.107 3 C 0.071 3.929 4 H 0.134 0.866 5 C 0.481 3.519 6 O -0.543 6.543 7 N -0.659 5.659 8 C 0.127 3.873 9 C -0.140 4.140 10 C -0.104 4.104 11 C -0.111 4.111 12 C -0.111 4.111 13 C -0.117 4.117 14 C -0.142 4.142 15 N -0.504 5.504 16 C 0.052 3.948 17 C 0.072 3.928 18 N -0.546 5.546 19 C 0.201 3.799 20 C -0.552 4.552 21 H 0.058 0.942 22 C 0.008 3.992 23 N -0.929 5.929 24 Si 0.963 3.037 25 H -0.272 1.272 26 H -0.280 1.280 27 H -0.267 1.267 28 C 0.072 3.928 29 C 0.059 3.941 30 H 0.064 0.936 31 H 0.066 0.934 32 H 0.043 0.957 33 H 0.059 0.941 34 H 0.101 0.899 35 H 0.426 0.574 36 H 0.153 0.847 37 H 0.153 0.847 38 H 0.079 0.921 39 H 0.079 0.921 40 H 0.064 0.936 41 H 0.125 0.875 42 H 0.106 0.894 43 H 0.057 0.943 44 H 0.087 0.913 45 H 0.026 0.974 46 H 0.053 0.947 47 H 0.003 0.997 48 H -0.002 1.002 49 H 0.265 0.735 50 H 0.027 0.973 51 H 0.056 0.944 52 H 0.090 0.910 53 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.209 -14.949 26.478 32.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.145 4.145 3 C -0.042 4.042 4 H 0.152 0.848 5 C 0.269 3.731 6 O -0.419 6.419 7 N -0.307 5.307 8 C 0.033 3.967 9 C -0.160 4.160 10 C -0.122 4.122 11 C -0.112 4.112 12 C -0.167 4.167 13 C -0.136 4.136 14 C -0.162 4.162 15 N -0.227 5.227 16 C -0.075 4.075 17 C -0.057 4.057 18 N -0.270 5.270 19 C 0.075 3.925 20 C -0.591 4.591 21 H 0.076 0.924 22 C -0.191 4.191 23 N -0.569 5.569 24 Si 0.787 3.213 25 H -0.198 1.198 26 H -0.206 1.206 27 H -0.191 1.191 28 C -0.057 4.057 29 C -0.069 4.069 30 H 0.083 0.917 31 H 0.085 0.915 32 H 0.062 0.938 33 H 0.078 0.922 34 H 0.119 0.881 35 H 0.265 0.735 36 H 0.171 0.829 37 H 0.171 0.829 38 H 0.098 0.902 39 H 0.098 0.902 40 H 0.083 0.917 41 H 0.143 0.857 42 H 0.124 0.876 43 H 0.075 0.925 44 H 0.105 0.895 45 H 0.045 0.955 46 H 0.072 0.928 47 H 0.021 0.979 48 H 0.016 0.984 49 H 0.074 0.926 50 H 0.045 0.955 51 H 0.074 0.926 52 H 0.109 0.891 53 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 10.596 -14.462 25.669 31.310 hybrid contribution -1.089 0.557 -0.888 1.512 sum 9.506 -13.904 24.781 29.963 Atomic orbital electron populations 1.21614 0.93809 1.01911 1.02396 1.21614 0.97921 0.91482 1.03461 1.22232 0.87192 0.99655 0.95103 0.84848 1.22810 0.92845 0.76783 0.80672 1.90725 1.66283 1.44945 1.39981 1.43683 1.05647 1.56400 1.24952 1.17949 0.83949 0.94520 1.00328 1.21196 0.94827 0.97597 1.02419 1.21203 0.93646 0.98042 0.99349 1.20243 0.97610 0.94544 0.98792 1.20804 0.89631 1.03533 1.02746 1.21096 0.93410 0.99577 0.99516 1.21121 0.95495 0.97613 1.01975 1.62559 1.56468 1.02315 1.01367 1.22380 0.98918 0.97342 0.88905 1.21862 0.97950 0.88973 0.96902 1.62568 1.58093 1.02790 1.03506 1.19367 0.93439 0.92929 0.86789 1.21942 0.94692 1.31698 1.10767 0.92378 1.25893 1.03214 0.94559 0.95446 1.70084 1.37698 1.33768 1.15311 0.85488 0.79611 0.78807 0.77372 1.19775 1.20583 1.19127 1.21850 0.96789 0.96914 0.90113 1.22235 0.99547 0.88166 0.96958 0.91719 0.91480 0.93815 0.92249 0.88068 0.73458 0.82886 0.82946 0.90197 0.90207 0.91720 0.85710 0.87590 0.92501 0.89534 0.95535 0.92840 0.97893 0.98397 0.92610 0.95504 0.92563 0.89145 0.93534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.21 9.80 71.98 0.71 -1.50 16 2 C -0.11 -1.61 5.17 30.59 0.16 -1.46 16 3 C 0.07 1.44 2.18 44.17 0.10 1.53 16 4 H 0.13 2.09 8.11 -2.39 -0.02 2.07 16 5 C 0.48 11.37 6.30 87.66 0.55 11.92 16 6 O -0.54 -18.25 9.24 -3.04 -0.03 -18.28 16 7 N -0.66 -11.23 5.25 -303.50 -1.59 -12.82 16 8 C 0.13 2.61 6.28 38.16 0.24 2.85 16 9 C -0.14 -2.12 9.96 22.39 0.22 -1.90 16 10 C -0.10 -1.50 9.69 22.25 0.22 -1.29 16 11 C -0.11 -1.91 5.88 -19.84 -0.12 -2.03 16 12 C -0.11 -1.27 10.01 71.24 0.71 -0.56 16 13 C -0.12 -2.58 9.69 22.25 0.22 -2.36 16 14 C -0.14 -3.62 8.66 22.39 0.19 -3.43 16 15 N -0.50 -15.03 4.15 -874.88 -3.63 -18.66 16 16 C 0.05 1.80 4.92 86.31 0.42 2.22 16 17 C 0.07 3.12 5.24 86.31 0.45 3.57 16 18 N -0.55 -26.39 4.92 -900.29 -4.43 -30.82 16 19 C 0.20 11.52 5.14 85.56 0.44 11.96 16 20 C -0.55 -32.19 7.67 25.60 0.20 -31.99 16 21 H 0.06 3.35 5.81 -2.91 -0.02 3.33 16 22 C 0.01 0.46 5.46 84.66 0.46 0.92 16 23 N -0.93 -57.49 13.29 21.45 0.28 -57.21 16 24 Si 0.96 45.38 29.54 68.60 2.03 47.41 16 25 H -0.27 -12.41 7.11 99.48 0.71 -11.71 16 26 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 27 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 28 C 0.07 3.10 5.32 86.31 0.46 3.56 16 29 C 0.06 1.99 5.27 86.31 0.46 2.44 16 30 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.04 0.98 7.75 -2.39 -0.02 0.96 16 33 H 0.06 1.09 6.11 -2.39 -0.01 1.08 16 34 H 0.10 0.80 7.32 -2.39 -0.02 0.78 16 35 H 0.43 3.71 8.03 -92.71 -0.74 2.97 16 36 H 0.15 1.33 8.06 -2.91 -0.02 1.31 16 37 H 0.15 1.27 8.06 -2.91 -0.02 1.25 16 38 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 39 H 0.08 0.69 8.09 -2.39 -0.02 0.67 16 40 H 0.06 0.77 8.08 -2.39 -0.02 0.75 16 41 H 0.12 2.52 8.06 -2.91 -0.02 2.50 16 42 H 0.11 3.27 6.40 -2.91 -0.02 3.25 16 43 H 0.06 2.22 5.34 -2.38 -0.01 2.20 16 44 H 0.09 2.58 6.07 -2.39 -0.01 2.56 16 45 H 0.03 1.24 6.45 -2.39 -0.02 1.22 16 46 H 0.05 2.38 8.14 -2.38 -0.02 2.36 16 47 H 0.00 0.18 8.12 -2.39 -0.02 0.16 16 48 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16 49 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 50 H 0.03 1.24 6.95 -2.39 -0.02 1.22 16 51 H 0.06 2.46 8.12 -2.39 -0.02 2.44 16 52 H 0.09 2.53 8.12 -2.39 -0.02 2.51 16 53 H 0.05 1.75 5.86 -2.39 -0.01 1.74 16 Total: -1.00 -75.90 404.28 -1.12 -77.02 By element: Atomic # 1 Polarization: 18.72 SS G_CDS: 0.16 Total: 18.88 kcal Atomic # 6 Polarization: -11.61 SS G_CDS: 6.09 Total: -5.52 kcal Atomic # 7 Polarization: -110.14 SS G_CDS: -9.37 Total: -119.51 kcal Atomic # 8 Polarization: -18.25 SS G_CDS: -0.03 Total: -18.28 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 2.03 Total: 47.41 kcal Total: -75.90 -1.12 -77.02 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878312395.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.530 kcal (2) G-P(sol) polarization free energy of solvation -75.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds