Wall clock time and date at job start Wed Apr 1 2020 04:02:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53004 * 109.46957 * 2 1 4 4 N 1.46499 * 109.46923 * 240.00257 * 2 1 3 5 5 C 1.39669 * 120.00274 * 57.79525 * 4 2 1 6 6 C 1.38911 * 120.07454 * 3.41763 * 5 4 2 7 7 C 1.38109 * 119.92293 * 179.76833 * 6 5 4 8 8 C 1.38292 * 120.07364 * 0.50373 * 7 6 5 9 9 C 1.38283 * 120.14946 * 359.74945 * 8 7 6 10 10 C 1.38108 * 120.07752 * 359.97438 * 9 8 7 11 11 C 1.50697 * 109.47113 * 120.00061 * 2 1 3 12 12 O 1.21278 * 119.99957 * 265.00017 * 11 2 1 13 13 N 1.34778 * 120.00023 * 84.99940 * 11 2 1 14 14 C 1.46502 * 119.99772 * 180.02562 * 13 11 2 15 15 C 1.52998 * 109.46954 * 180.02562 * 14 13 11 16 16 H 1.08998 * 109.52301 * 304.91978 * 15 14 13 17 17 C 1.53356 * 109.68517 * 184.74921 * 15 14 13 18 18 C 1.53042 * 109.60855 * 178.74870 * 17 15 14 19 19 C 1.53191 * 109.31231 * 61.37446 * 18 17 15 20 20 N 1.46928 * 108.77589 * 305.36223 * 19 18 17 21 21 C 1.36930 * 120.63324 * 233.62957 * 20 19 18 22 22 H 1.08002 * 119.99756 * 149.48337 * 21 20 19 23 23 C 1.38812 * 120.00380 * 329.48380 * 21 20 19 24 24 N 1.31619 * 119.99777 * 343.32145 * 23 21 20 25 25 Si 1.86799 * 120.00310 * 163.31672 * 23 21 20 26 26 H 1.48498 * 109.46930 * 0.02562 * 25 23 21 27 27 H 1.48497 * 109.47151 * 120.00513 * 25 23 21 28 28 H 1.48501 * 109.46827 * 240.00522 * 25 23 21 29 29 C 1.46929 * 118.73472 * 53.61232 * 20 19 18 30 30 H 1.08998 * 109.47197 * 308.72053 * 1 2 3 31 31 H 1.08998 * 109.46917 * 68.71893 * 1 2 3 32 32 H 1.09003 * 109.46700 * 188.71842 * 1 2 3 33 33 H 1.08998 * 109.46676 * 169.49579 * 3 2 1 34 34 H 1.09001 * 109.46949 * 289.49870 * 3 2 1 35 35 H 1.09000 * 109.47347 * 49.49605 * 3 2 1 36 36 H 0.97009 * 119.99743 * 237.79876 * 4 2 1 37 37 H 1.07999 * 120.03891 * 0.02562 * 6 5 4 38 38 H 1.07995 * 119.96074 * 180.25235 * 7 6 5 39 39 H 1.08000 * 119.92295 * 179.72290 * 8 7 6 40 40 H 1.07999 * 119.96123 * 180.02562 * 9 8 7 41 41 H 1.07993 * 120.03707 * 180.02562 * 10 9 8 42 42 H 0.97001 * 120.00000 * 0.02562 * 13 11 2 43 43 H 1.08995 * 109.47361 * 59.99723 * 14 13 11 44 44 H 1.09008 * 109.47142 * 299.99963 * 14 13 11 45 45 H 1.08999 * 109.41509 * 58.71208 * 17 15 14 46 46 H 1.09002 * 109.41783 * 298.78662 * 17 15 14 47 47 H 1.09004 * 109.49320 * 301.42312 * 18 17 15 48 48 H 1.08992 * 109.49625 * 181.32554 * 18 17 15 49 49 H 1.09004 * 109.58617 * 185.58073 * 19 18 17 50 50 H 1.09001 * 109.70664 * 65.22301 * 19 18 17 51 51 H 0.97000 * 120.00261 * 179.97438 * 24 23 21 52 52 H 1.09002 * 109.59027 * 66.18134 * 29 20 19 53 53 H 1.09004 * 109.58433 * 186.45503 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 1.6434 -0.2408 -2.4642 6 6 0.8658 0.9027 -2.5954 7 6 0.5008 1.3474 -3.8510 8 6 0.8998 0.6496 -4.9764 9 6 1.6695 -0.4921 -4.8490 10 6 2.0429 -0.9391 -3.5967 11 6 2.0324 -0.7104 1.2304 12 8 2.3208 -0.0749 2.2223 13 7 2.1611 -2.0520 1.2286 14 6 2.6489 -2.7426 2.4250 15 6 2.7011 -4.2484 2.1590 16 1 1.7216 -4.5941 1.8286 17 6 3.0973 -4.9865 3.4435 18 6 3.1186 -6.4946 3.1836 19 6 4.1611 -6.8082 2.1059 20 7 3.8716 -5.9950 0.9169 21 6 3.7270 -6.5821 -0.3117 22 1 3.0702 -6.1412 -1.0469 23 6 4.4245 -7.7441 -0.6121 24 7 5.4538 -8.1031 0.1254 25 14 3.9023 -8.7982 -2.0631 26 1 2.7259 -8.1802 -2.7260 27 1 5.0224 -8.8950 -3.0332 28 1 3.5437 -10.1573 -1.5839 29 6 3.7398 -4.5398 1.0714 30 1 -0.3633 0.6428 0.8018 31 1 -0.3633 0.3730 -0.9576 32 1 -0.3633 -1.0158 0.1558 33 1 3.1138 1.4482 0.1874 34 1 1.8377 1.8994 -0.9687 35 1 1.5319 2.0076 0.7814 36 1 2.6021 -1.4603 -1.1076 37 1 0.5505 1.4459 -1.7168 38 1 -0.1003 2.2387 -3.9539 39 1 0.6093 0.9970 -5.9568 40 1 1.9798 -1.0345 -5.7299 41 1 2.6443 -1.8306 -3.4981 42 1 1.9308 -2.5603 0.4352 43 1 1.9761 -2.5438 3.2591 44 1 3.6481 -2.3826 2.6704 45 1 2.3736 -4.7634 4.2275 46 1 4.0876 -4.6584 3.7593 47 1 2.1350 -6.8190 2.8437 48 1 3.3773 -7.0186 4.1035 49 1 4.1115 -7.8657 1.8462 50 1 5.1575 -6.5697 2.4779 51 1 5.9410 -8.9152 -0.0843 52 1 4.7009 -4.1145 1.3605 53 1 3.4147 -4.1002 0.1284 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000895412108.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:02:07 Heat of formation + Delta-G solvation = -0.054189 kcal Electronic energy + Delta-G solvation = -31154.576212 eV Core-core repulsion = 27218.871655 eV Total energy + Delta-G solvation = -3935.704557 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -41.73373 -40.20682 -39.38439 -37.31177 -36.37105 -34.70119 -33.16938 -32.31617 -32.05211 -31.42985 -29.51624 -28.32522 -27.33689 -27.03176 -24.39387 -23.80285 -23.42062 -22.62862 -22.36951 -21.07999 -20.35815 -19.00071 -18.58671 -18.06901 -17.18048 -16.89736 -16.81662 -16.50357 -16.13489 -15.69123 -15.57192 -15.23360 -15.08632 -14.92034 -14.71024 -14.52913 -14.51185 -14.29006 -14.08198 -13.95059 -13.78778 -13.47012 -13.19833 -13.01614 -12.96370 -12.92192 -12.85398 -12.55939 -12.45764 -12.28150 -12.10687 -11.98220 -11.85497 -11.61475 -11.56635 -11.35407 -11.11418 -11.08461 -10.80006 -10.56614 -10.18905 -9.71903 -8.66451 -8.36679 -7.88926 -5.36877 0.59884 0.76982 1.36202 1.44522 1.47210 1.56785 2.00025 2.34368 2.49218 3.05852 3.26705 3.44468 3.56879 3.86239 3.92913 3.95536 3.98650 4.04548 4.08867 4.17624 4.38183 4.42036 4.53397 4.53719 4.57955 4.64406 4.67013 4.69869 4.72680 4.77405 4.82948 4.84414 4.86856 4.93871 4.98124 5.08094 5.14897 5.18519 5.21206 5.22807 5.30191 5.33849 5.41848 5.44298 5.53972 5.65476 5.67392 5.75394 5.82516 5.97593 6.28007 6.38388 6.44467 6.65842 7.03254 7.13853 7.84161 8.37670 9.17392 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.009283 B = 0.003291 C = 0.002518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3015.565140 B = 8506.838281 C =11115.747985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.173 3.827 3 C -0.160 4.160 4 N -0.742 5.742 5 C 0.211 3.789 6 C -0.216 4.216 7 C -0.080 4.080 8 C -0.187 4.187 9 C -0.083 4.083 10 C -0.211 4.211 11 C 0.517 3.483 12 O -0.565 6.565 13 N -0.714 5.714 14 C 0.136 3.864 15 C -0.101 4.101 16 H 0.076 0.924 17 C -0.097 4.097 18 C -0.130 4.130 19 C 0.174 3.826 20 N -0.607 5.607 21 C -0.263 4.263 22 H 0.068 0.932 23 C -0.047 4.047 24 N -0.934 5.934 25 Si 0.962 3.038 26 H -0.264 1.264 27 H -0.294 1.294 28 H -0.291 1.291 29 C 0.154 3.846 30 H 0.081 0.919 31 H 0.099 0.901 32 H 0.062 0.938 33 H 0.047 0.953 34 H 0.095 0.905 35 H 0.079 0.921 36 H 0.399 0.601 37 H 0.150 0.850 38 H 0.143 0.857 39 H 0.133 0.867 40 H 0.130 0.870 41 H 0.116 0.884 42 H 0.408 0.592 43 H 0.076 0.924 44 H 0.059 0.941 45 H 0.081 0.919 46 H 0.055 0.945 47 H 0.053 0.947 48 H 0.069 0.931 49 H 0.046 0.954 50 H -0.007 1.007 51 H 0.249 0.751 52 H 0.005 0.995 53 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.458 18.562 -2.886 22.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.083 3.917 3 C -0.218 4.218 4 N -0.375 5.375 5 C 0.109 3.891 6 C -0.238 4.238 7 C -0.098 4.098 8 C -0.207 4.207 9 C -0.102 4.102 10 C -0.234 4.234 11 C 0.303 3.697 12 O -0.443 6.443 13 N -0.366 5.366 14 C 0.012 3.988 15 C -0.121 4.121 16 H 0.094 0.906 17 C -0.135 4.135 18 C -0.169 4.169 19 C 0.049 3.951 20 N -0.330 5.330 21 C -0.393 4.393 22 H 0.086 0.914 23 C -0.243 4.243 24 N -0.580 5.580 25 Si 0.791 3.209 26 H -0.188 1.188 27 H -0.221 1.221 28 H -0.218 1.218 29 C 0.028 3.972 30 H 0.100 0.900 31 H 0.117 0.883 32 H 0.081 0.919 33 H 0.066 0.934 34 H 0.113 0.887 35 H 0.098 0.902 36 H 0.235 0.765 37 H 0.168 0.832 38 H 0.161 0.839 39 H 0.151 0.849 40 H 0.148 0.852 41 H 0.134 0.866 42 H 0.245 0.755 43 H 0.094 0.906 44 H 0.077 0.923 45 H 0.099 0.901 46 H 0.074 0.926 47 H 0.072 0.928 48 H 0.088 0.912 49 H 0.064 0.936 50 H 0.011 0.989 51 H 0.058 0.942 52 H 0.023 0.977 53 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -12.222 18.972 -2.029 22.659 hybrid contribution 0.764 -1.782 -0.951 2.159 sum -11.457 17.190 -2.980 20.872 Atomic orbital electron populations 1.22489 0.91192 1.03791 1.05352 1.20398 0.96401 0.93263 0.81641 1.22350 1.01483 0.93558 1.04383 1.44808 1.55652 1.35289 1.01783 1.17862 0.93554 0.93217 0.84463 1.21351 1.04909 0.98154 0.99360 1.21256 0.97614 0.99273 0.91652 1.21207 1.02557 0.97364 0.99528 1.21130 0.96197 0.96203 0.96654 1.20810 1.07537 1.02734 0.92283 1.20780 0.76961 0.82346 0.89598 1.90702 1.50867 1.66703 1.36070 1.46135 1.66037 1.06890 1.17551 1.21327 0.99462 0.90755 0.87296 1.21776 1.00179 0.92810 0.97355 0.90600 1.21385 1.01482 0.94416 0.96180 1.21992 0.99644 0.96621 0.98620 1.20588 0.93233 0.95486 0.85819 1.44247 1.83331 1.01421 1.04034 1.19512 1.19314 1.07744 0.92713 0.91395 1.25827 0.95555 1.02157 1.00720 1.70196 1.19748 1.25166 1.42878 0.85286 0.77763 0.78655 0.79229 1.18799 1.22092 1.21817 1.21003 0.95054 0.84511 0.96628 0.89972 0.88268 0.91882 0.93406 0.88659 0.90216 0.76497 0.83249 0.83916 0.84867 0.85194 0.86568 0.75518 0.90557 0.92277 0.90072 0.92640 0.92776 0.91206 0.93585 0.98861 0.94189 0.97720 0.92743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.75 8.23 71.98 0.59 -2.16 16 2 C 0.17 3.41 0.98 2.86 0.00 3.41 16 3 C -0.16 -3.02 7.68 71.98 0.55 -2.47 16 4 N -0.74 -14.86 4.98 -302.79 -1.51 -16.37 16 5 C 0.21 4.30 6.23 38.22 0.24 4.53 16 6 C -0.22 -3.71 6.50 22.40 0.15 -3.57 16 7 C -0.08 -1.23 10.04 22.25 0.22 -1.01 16 8 C -0.19 -3.11 10.04 22.29 0.22 -2.88 16 9 C -0.08 -1.59 10.04 22.25 0.22 -1.37 16 10 C -0.21 -4.55 9.90 22.40 0.22 -4.33 16 11 C 0.52 12.99 6.60 87.66 0.58 13.57 16 12 O -0.57 -17.86 16.27 -3.02 -0.05 -17.91 16 13 N -0.71 -17.07 5.02 -463.06 -2.33 -19.40 16 14 C 0.14 3.52 5.08 86.38 0.44 3.96 16 15 C -0.10 -3.00 2.39 -10.61 -0.03 -3.02 16 16 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 17 C -0.10 -2.85 5.19 30.73 0.16 -2.69 16 18 C -0.13 -4.58 6.08 30.67 0.19 -4.40 16 19 C 0.17 8.23 5.29 86.36 0.46 8.69 16 20 N -0.61 -29.28 2.98 -699.07 -2.08 -31.37 16 21 C -0.26 -13.95 9.56 84.03 0.80 -13.15 16 22 H 0.07 3.47 7.88 -2.91 -0.02 3.45 16 23 C -0.05 -2.57 4.90 84.86 0.42 -2.15 16 24 N -0.93 -54.89 11.36 21.65 0.25 -54.65 16 25 Si 0.96 44.01 29.59 68.60 2.03 46.04 16 26 H -0.26 -11.35 7.11 99.48 0.71 -10.65 16 27 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 28 H -0.29 -13.35 7.11 99.48 0.71 -12.65 16 29 C 0.15 5.90 5.59 86.36 0.48 6.39 16 30 H 0.08 1.19 8.04 -2.39 -0.02 1.18 16 31 H 0.10 1.42 4.71 -2.39 -0.01 1.41 16 32 H 0.06 1.06 8.12 -2.39 -0.02 1.05 16 33 H 0.05 1.07 8.10 -2.39 -0.02 1.05 16 34 H 0.10 1.54 4.76 -2.39 -0.01 1.52 16 35 H 0.08 1.41 8.03 -2.39 -0.02 1.39 16 36 H 0.40 8.37 7.32 -92.70 -0.68 7.69 16 37 H 0.15 2.12 3.70 -2.91 -0.01 2.11 16 38 H 0.14 1.45 8.06 -2.91 -0.02 1.42 16 39 H 0.13 1.66 8.06 -2.91 -0.02 1.64 16 40 H 0.13 2.09 8.06 -2.91 -0.02 2.06 16 41 H 0.12 2.54 8.06 -2.91 -0.02 2.52 16 42 H 0.41 9.05 6.48 -92.71 -0.60 8.45 16 43 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 44 H 0.06 1.68 8.14 -2.38 -0.02 1.66 16 45 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 46 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 47 H 0.05 1.92 8.14 -2.38 -0.02 1.90 16 48 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 49 H 0.05 2.47 6.24 -2.38 -0.01 2.46 16 50 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 16 51 H 0.25 14.19 8.31 -92.71 -0.77 13.42 16 52 H 0.00 0.20 8.14 -2.39 -0.02 0.18 16 53 H 0.05 1.97 7.13 -2.39 -0.02 1.96 16 Total: -1.00 -66.25 406.16 1.87 -64.39 By element: Atomic # 1 Polarization: 32.26 SS G_CDS: -0.36 Total: 31.90 kcal Atomic # 6 Polarization: -8.56 SS G_CDS: 5.92 Total: -2.64 kcal Atomic # 7 Polarization: -116.11 SS G_CDS: -5.67 Total: -121.78 kcal Atomic # 8 Polarization: -17.86 SS G_CDS: -0.05 Total: -17.91 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.04 kcal Total: -66.25 1.87 -64.39 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000895412108.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.333 kcal (2) G-P(sol) polarization free energy of solvation -66.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds