Wall clock time and date at job start Wed Apr 1 2020 04:02:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47254 * 2 1 4 4 N 1.46507 * 109.46960 * 240.00115 * 2 1 3 5 5 C 1.39670 * 119.99875 * 179.54600 * 4 2 1 6 6 C 1.38914 * 120.07797 * 6.37620 * 5 4 2 7 7 C 1.38108 * 119.92699 * 179.76924 * 6 5 4 8 8 C 1.38283 * 120.06953 * 0.51506 * 7 6 5 9 9 C 1.38287 * 120.15402 * 359.73739 * 8 7 6 10 10 C 1.38097 * 120.07568 * 0.02562 * 9 8 7 11 11 C 1.50699 * 109.47303 * 120.00130 * 2 1 3 12 12 O 1.21278 * 120.00140 * 265.00031 * 11 2 1 13 13 N 1.34774 * 119.99570 * 84.99331 * 11 2 1 14 14 C 1.46503 * 119.99837 * 180.02562 * 13 11 2 15 15 C 1.52998 * 109.47236 * 180.02562 * 14 13 11 16 16 H 1.08995 * 109.52460 * 55.08038 * 15 14 13 17 17 C 1.53046 * 109.49748 * 175.16571 * 15 14 13 18 18 C 1.53037 * 109.53677 * 181.31367 * 17 15 14 19 19 C 1.53186 * 109.31690 * 298.63457 * 18 17 15 20 20 N 1.46929 * 108.77756 * 54.63117 * 19 18 17 21 21 C 1.36933 * 120.62883 * 126.66723 * 20 19 18 22 22 H 1.08004 * 120.00465 * 329.88614 * 21 20 19 23 23 C 1.38808 * 120.00054 * 149.88851 * 21 20 19 24 24 N 1.31621 * 120.00197 * 161.24156 * 23 21 20 25 25 Si 1.86803 * 120.00064 * 341.23673 * 23 21 20 26 26 H 1.48504 * 109.46925 * 95.03528 * 25 23 21 27 27 H 1.48498 * 109.47308 * 215.03650 * 25 23 21 28 28 H 1.48503 * 109.46833 * 335.04036 * 25 23 21 29 29 C 1.46918 * 118.73965 * 306.39811 * 20 19 18 30 30 H 1.09007 * 109.47150 * 304.22246 * 1 2 3 31 31 H 1.09006 * 109.46816 * 64.21542 * 1 2 3 32 32 H 1.08996 * 109.47371 * 184.21705 * 1 2 3 33 33 H 1.09005 * 109.46834 * 185.31190 * 3 2 1 34 34 H 1.08998 * 109.46881 * 305.31229 * 3 2 1 35 35 H 1.08999 * 109.47167 * 65.31654 * 3 2 1 36 36 H 0.96996 * 120.00054 * 359.54549 * 4 2 1 37 37 H 1.08001 * 120.03577 * 0.02562 * 6 5 4 38 38 H 1.07992 * 119.96121 * 180.25643 * 7 6 5 39 39 H 1.08000 * 119.92119 * 179.76804 * 8 7 6 40 40 H 1.08002 * 119.95744 * 180.02562 * 9 8 7 41 41 H 1.07995 * 120.04157 * 180.02562 * 10 9 8 42 42 H 0.97000 * 120.00519 * 0.02562 * 13 11 2 43 43 H 1.09006 * 109.46852 * 60.00386 * 14 13 11 44 44 H 1.09002 * 109.47057 * 300.00711 * 14 13 11 45 45 H 1.09001 * 109.45756 * 301.33516 * 17 15 14 46 46 H 1.08993 * 109.46090 * 61.30721 * 17 15 14 47 47 H 1.09004 * 109.49680 * 58.58790 * 18 17 15 48 48 H 1.09003 * 109.50037 * 178.64766 * 18 17 15 49 49 H 1.09002 * 109.58721 * 294.84787 * 19 18 17 50 50 H 1.09002 * 109.59322 * 174.42535 * 19 18 17 51 51 H 0.97002 * 119.99997 * 180.02562 * 24 23 21 52 52 H 1.09002 * 109.58995 * 173.38978 * 29 20 19 53 53 H 1.08999 * 109.58824 * 293.67599 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 -1.1963 5 6 3.3914 -0.8099 -1.4221 6 6 4.2952 -0.3935 -0.4528 7 6 5.6522 -0.5173 -0.6774 8 6 6.1118 -1.0453 -1.8700 9 6 5.2150 -1.4560 -2.8392 10 6 3.8566 -1.3396 -2.6191 11 6 2.0324 -0.7104 1.2304 12 8 2.3208 -0.0749 2.2223 13 7 2.1609 -2.0520 1.2285 14 6 2.6488 -2.7428 2.4249 15 6 2.7008 -4.2485 2.1588 16 1 3.3038 -4.4411 1.2715 17 6 3.3229 -4.9589 3.3633 18 6 3.4054 -6.4615 3.0848 19 6 1.9932 -7.0159 2.8729 20 7 1.3350 -6.2408 1.8122 21 6 0.7782 -6.8704 0.7312 22 1 1.1931 -7.8023 0.3761 23 6 -0.3195 -6.3111 0.0917 24 7 -0.6296 -6.6851 -1.1316 25 14 -1.3566 -5.0276 0.9671 26 1 -0.8903 -3.6702 0.5857 27 1 -2.7798 -5.1902 0.5757 28 1 -1.2241 -5.2019 2.4359 29 6 1.2805 -4.7779 1.9365 30 1 -0.3634 0.5780 0.8498 31 1 -0.3633 0.4471 -0.9254 32 1 -0.3634 -1.0248 0.0756 33 1 3.1259 1.4439 -0.0951 34 1 1.6011 1.9830 -0.8386 35 1 1.7565 1.9281 0.9338 36 1 1.3880 -1.0650 -1.8314 37 1 3.9369 0.0228 0.4771 38 1 6.3552 -0.1976 0.0774 39 1 7.1736 -1.1376 -2.0447 40 1 5.5774 -1.8683 -3.7693 41 1 3.1568 -1.6609 -3.3763 42 1 1.9305 -2.5603 0.4352 43 1 1.9758 -2.5439 3.2590 44 1 3.6479 -2.3827 2.6703 45 1 4.3245 -4.5665 3.5388 46 1 2.7058 -4.7866 4.2450 47 1 4.0019 -6.6332 2.1887 48 1 3.8704 -6.9637 3.9331 49 1 1.4231 -6.9269 3.7977 50 1 2.0523 -8.0633 2.5770 51 1 -1.3965 -6.2940 -1.5786 52 1 0.8695 -4.3486 1.0227 53 1 0.6503 -4.5063 2.7834 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000895412110.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:02:12 Heat of formation + Delta-G solvation = -7.625326 kcal Electronic energy + Delta-G solvation = -32490.574677 eV Core-core repulsion = 28554.541811 eV Total energy + Delta-G solvation = -3936.032866 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -41.84955 -40.05242 -39.51284 -37.33764 -36.29378 -34.83108 -33.26497 -32.86330 -32.07474 -31.76438 -29.35902 -28.24344 -27.48330 -27.13577 -24.65601 -23.90568 -23.25464 -22.81276 -22.28992 -21.16853 -20.48022 -18.91599 -18.79449 -18.17210 -17.39567 -17.14406 -17.02139 -16.50169 -16.19313 -15.79221 -15.50625 -15.39030 -15.12915 -14.91114 -14.88824 -14.72733 -14.53370 -14.33346 -14.04237 -13.95609 -13.74543 -13.40691 -13.39331 -13.31241 -13.21797 -13.08242 -12.97919 -12.64363 -12.51186 -12.23185 -12.13434 -12.09264 -11.73928 -11.71108 -11.63854 -11.56513 -11.37882 -11.29550 -10.70971 -10.64142 -10.14011 -9.78600 -8.89987 -8.42488 -8.18115 -5.52398 0.54481 0.70642 1.22181 1.37634 1.44318 1.45388 2.10267 2.34510 2.37043 3.00374 3.03197 3.30119 3.53919 3.71751 3.79757 3.85985 3.88992 3.96542 4.03933 4.11650 4.27258 4.37376 4.42191 4.45053 4.49131 4.56850 4.58210 4.63018 4.64399 4.68044 4.71432 4.74571 4.76735 4.85746 4.92367 4.94562 5.00252 5.07348 5.15765 5.16349 5.19291 5.20636 5.27313 5.36848 5.41722 5.55766 5.62314 5.76125 5.87398 5.91162 6.12454 6.29483 6.43662 6.73086 6.91051 7.08248 7.60343 8.02893 9.01700 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.009685 B = 0.004258 C = 0.004011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2890.316989 B = 6573.816837 C = 6979.176071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.166 3.834 3 C -0.150 4.150 4 N -0.736 5.736 5 C 0.206 3.794 6 C -0.210 4.210 7 C -0.085 4.085 8 C -0.181 4.181 9 C -0.081 4.081 10 C -0.199 4.199 11 C 0.508 3.492 12 O -0.574 6.574 13 N -0.716 5.716 14 C 0.132 3.868 15 C -0.103 4.103 16 H 0.066 0.934 17 C -0.098 4.098 18 C -0.124 4.124 19 C 0.137 3.863 20 N -0.620 5.620 21 C -0.250 4.250 22 H 0.050 0.950 23 C -0.026 4.026 24 N -0.952 5.952 25 Si 0.941 3.059 26 H -0.267 1.267 27 H -0.312 1.312 28 H -0.271 1.271 29 C 0.136 3.864 30 H 0.085 0.915 31 H 0.102 0.898 32 H 0.054 0.946 33 H 0.063 0.937 34 H 0.085 0.915 35 H 0.072 0.928 36 H 0.410 0.590 37 H 0.114 0.886 38 H 0.129 0.871 39 H 0.136 0.864 40 H 0.139 0.861 41 H 0.130 0.870 42 H 0.403 0.597 43 H 0.062 0.938 44 H 0.074 0.926 45 H 0.082 0.918 46 H 0.067 0.933 47 H 0.051 0.949 48 H 0.090 0.910 49 H 0.032 0.968 50 H 0.053 0.947 51 H 0.262 0.738 52 H 0.048 0.952 53 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.621 15.262 1.435 18.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.075 3.925 3 C -0.208 4.208 4 N -0.370 5.370 5 C 0.104 3.896 6 C -0.232 4.232 7 C -0.104 4.104 8 C -0.201 4.201 9 C -0.099 4.099 10 C -0.222 4.222 11 C 0.294 3.706 12 O -0.453 6.453 13 N -0.366 5.366 14 C 0.008 3.992 15 C -0.124 4.124 16 H 0.085 0.915 17 C -0.136 4.136 18 C -0.163 4.163 19 C 0.013 3.987 20 N -0.344 5.344 21 C -0.380 4.380 22 H 0.068 0.932 23 C -0.221 4.221 24 N -0.598 5.598 25 Si 0.771 3.229 26 H -0.193 1.193 27 H -0.241 1.241 28 H -0.196 1.196 29 C 0.011 3.989 30 H 0.104 0.896 31 H 0.121 0.879 32 H 0.073 0.927 33 H 0.082 0.918 34 H 0.104 0.896 35 H 0.091 0.909 36 H 0.248 0.752 37 H 0.132 0.868 38 H 0.147 0.853 39 H 0.154 0.846 40 H 0.157 0.843 41 H 0.148 0.852 42 H 0.238 0.762 43 H 0.080 0.920 44 H 0.093 0.907 45 H 0.100 0.900 46 H 0.085 0.915 47 H 0.070 0.930 48 H 0.108 0.892 49 H 0.050 0.950 50 H 0.072 0.928 51 H 0.071 0.929 52 H 0.066 0.934 53 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 9.680 15.772 2.216 18.638 hybrid contribution -1.315 -0.334 -0.519 1.453 sum 8.365 15.438 1.697 17.641 Atomic orbital electron populations 1.22045 0.89964 1.03311 1.05647 1.20476 0.96641 0.93088 0.82288 1.22174 1.02437 0.92560 1.03618 1.44783 1.03579 1.63454 1.25224 1.17876 0.83921 0.94260 0.93565 1.20950 0.93928 1.08810 0.99531 1.21109 0.94643 0.97131 0.97494 1.21173 1.00454 1.03854 0.94569 1.21186 0.92359 0.96842 0.99539 1.20848 0.96919 1.07524 0.96870 1.21384 0.76732 0.82394 0.90137 1.90663 1.51880 1.66546 1.36244 1.46113 1.66057 1.07252 1.17140 1.21376 0.99715 0.90936 0.87212 1.21758 0.97614 0.92744 1.00284 0.91523 1.21373 1.01129 0.94997 0.96120 1.21883 0.96792 0.95927 1.01699 1.21182 0.92664 0.94901 0.89957 1.44464 1.66388 1.01192 1.22372 1.18856 1.08009 1.06917 1.04169 0.93205 1.25871 0.98398 1.01083 0.96747 1.69945 1.29742 1.47597 1.12506 0.85980 0.77501 0.79944 0.79489 1.19350 1.24147 1.19606 1.21313 0.95336 0.83995 0.98239 0.89616 0.87898 0.92728 0.91809 0.89597 0.90881 0.75244 0.86791 0.85330 0.84640 0.84280 0.85213 0.76231 0.91970 0.90742 0.89976 0.91451 0.93038 0.89192 0.95031 0.92826 0.92899 0.93399 0.95886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.07 8.57 71.98 0.62 -2.45 16 2 C 0.17 3.86 0.99 2.86 0.00 3.86 16 3 C -0.15 -3.16 7.94 71.98 0.57 -2.59 16 4 N -0.74 -16.50 4.50 -302.78 -1.36 -17.86 16 5 C 0.21 5.10 6.12 38.22 0.23 5.33 16 6 C -0.21 -5.47 7.23 22.40 0.16 -5.31 16 7 C -0.09 -2.00 10.04 22.25 0.22 -1.77 16 8 C -0.18 -3.86 10.04 22.29 0.22 -3.64 16 9 C -0.08 -1.74 10.04 22.25 0.22 -1.52 16 10 C -0.20 -4.67 9.90 22.40 0.22 -4.45 16 11 C 0.51 15.03 4.03 87.66 0.35 15.39 16 12 O -0.57 -19.74 15.62 -3.02 -0.05 -19.78 16 13 N -0.72 -21.85 5.08 -463.05 -2.35 -24.20 16 14 C 0.13 3.93 5.07 86.38 0.44 4.37 16 15 C -0.10 -3.35 2.38 -10.71 -0.03 -3.38 16 16 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 17 C -0.10 -2.67 5.17 30.62 0.16 -2.51 16 18 C -0.12 -3.63 6.08 30.67 0.19 -3.45 16 19 C 0.14 5.16 6.51 86.36 0.56 5.73 16 20 N -0.62 -28.52 2.74 -699.10 -1.91 -30.44 16 21 C -0.25 -13.93 10.02 84.03 0.84 -13.09 16 22 H 0.05 3.06 8.06 -2.91 -0.02 3.04 16 23 C -0.03 -1.46 5.24 84.86 0.45 -1.02 16 24 N -0.95 -57.99 13.97 21.65 0.30 -57.69 16 25 Si 0.94 45.41 24.37 68.60 1.67 47.08 16 26 H -0.27 -11.73 6.76 99.48 0.67 -11.05 16 27 H -0.31 -15.45 7.11 99.48 0.71 -14.74 16 28 H -0.27 -12.95 6.42 99.48 0.64 -12.31 16 29 C 0.14 5.56 3.28 86.37 0.28 5.84 16 30 H 0.08 1.65 8.14 -2.38 -0.02 1.63 16 31 H 0.10 1.53 8.14 -2.38 -0.02 1.51 16 32 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.06 1.49 5.12 -2.38 -0.01 1.48 16 34 H 0.09 1.45 8.14 -2.39 -0.02 1.44 16 35 H 0.07 1.60 7.67 -2.39 -0.02 1.58 16 36 H 0.41 8.20 8.49 -92.71 -0.79 7.42 16 37 H 0.11 3.26 3.97 -2.91 -0.01 3.25 16 38 H 0.13 2.58 8.06 -2.91 -0.02 2.55 16 39 H 0.14 2.26 8.06 -2.91 -0.02 2.24 16 40 H 0.14 2.36 8.06 -2.91 -0.02 2.33 16 41 H 0.13 2.70 8.06 -2.91 -0.02 2.68 16 42 H 0.40 12.88 7.05 -92.71 -0.65 12.23 16 43 H 0.06 1.90 8.14 -2.38 -0.02 1.88 16 44 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 45 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 46 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 47 H 0.05 1.62 8.14 -2.38 -0.02 1.61 16 48 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 49 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 50 H 0.05 2.07 7.93 -2.39 -0.02 2.05 16 51 H 0.26 15.13 8.31 -92.71 -0.77 14.35 16 52 H 0.05 2.12 3.98 -2.39 -0.01 2.11 16 53 H 0.02 0.96 6.88 -2.39 -0.02 0.94 16 Total: -1.00 -68.30 402.62 1.39 -66.91 By element: Atomic # 1 Polarization: 41.26 SS G_CDS: -0.63 Total: 40.63 kcal Atomic # 6 Polarization: -10.37 SS G_CDS: 5.72 Total: -4.64 kcal Atomic # 7 Polarization: -124.87 SS G_CDS: -5.33 Total: -130.19 kcal Atomic # 8 Polarization: -19.74 SS G_CDS: -0.05 Total: -19.78 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 1.67 Total: 47.08 kcal Total: -68.30 1.39 -66.91 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000895412110.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.284 kcal (2) G-P(sol) polarization free energy of solvation -68.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds