Wall clock time and date at job start Wed Apr 1 2020 04:09:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 109.47098 * 2 1 4 4 H 1.08998 * 109.59789 * 327.82513 * 3 2 1 5 5 C 1.51401 * 109.59748 * 207.34393 * 3 2 1 6 6 O 1.21282 * 119.88371 * 131.56004 * 5 3 2 7 7 N 1.33612 * 120.23714 * 311.57898 * 5 3 2 8 8 C 1.47255 * 119.84290 * 359.48525 * 7 5 3 9 9 C 1.53113 * 108.40284 * 290.00622 * 8 7 5 10 10 C 1.51679 * 110.75575 * 85.58604 * 9 8 7 11 11 N 1.45755 * 113.94306 * 293.23320 * 10 9 8 12 12 C 1.46895 * 111.00331 * 192.73148 * 11 10 9 13 13 C 1.50706 * 109.47152 * 50.10656 * 12 11 10 14 14 C 1.38284 * 119.92672 * 89.99843 * 13 12 11 15 15 C 1.38098 * 120.07550 * 180.02562 * 14 13 12 16 16 C 1.38913 * 119.92514 * 359.97438 * 15 14 13 17 17 N 1.39679 * 120.07362 * 179.97438 * 16 15 14 18 18 C 1.46496 * 120.00221 * 0.02562 * 17 16 15 19 19 C 1.46494 * 119.99630 * 179.97438 * 17 16 15 20 20 C 1.50694 * 109.47590 * 269.99860 * 19 17 16 21 21 H 1.08001 * 119.99938 * 0.02562 * 20 19 17 22 22 C 1.37883 * 120.00115 * 180.02562 * 20 19 17 23 23 N 1.31508 * 119.99847 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 119.99883 * 180.02562 * 22 20 19 25 25 H 1.48507 * 109.47112 * 270.00311 * 24 22 20 26 26 H 1.48499 * 109.47233 * 29.99842 * 24 22 20 27 27 H 1.48495 * 109.47181 * 150.00267 * 24 22 20 28 28 C 1.38908 * 119.85022 * 0.25598 * 16 15 14 29 29 C 1.38109 * 119.92563 * 359.49316 * 28 16 15 30 30 H 1.09005 * 109.46964 * 293.36458 * 1 2 3 31 31 H 1.09002 * 109.46903 * 53.35625 * 1 2 3 32 32 H 1.08994 * 109.47627 * 173.36059 * 1 2 3 33 33 H 1.08998 * 109.47379 * 239.99623 * 2 1 3 34 34 H 1.09005 * 109.47060 * 119.99600 * 2 1 3 35 35 H 0.96992 * 120.07973 * 179.45982 * 7 5 3 36 36 H 1.08998 * 109.67876 * 49.73611 * 8 7 5 37 37 H 1.08996 * 109.67289 * 170.28060 * 8 7 5 38 38 H 1.08993 * 109.21886 * 205.91919 * 9 8 7 39 39 H 1.09010 * 109.21642 * 325.30395 * 9 8 7 40 40 H 1.09005 * 108.59206 * 172.07513 * 10 9 8 41 41 H 1.09001 * 108.58830 * 54.38695 * 10 9 8 42 42 H 1.09002 * 109.47172 * 290.10773 * 12 11 10 43 43 H 1.09000 * 109.47460 * 170.10305 * 12 11 10 44 44 H 1.08004 * 119.95838 * 359.97438 * 14 13 12 45 45 H 1.08000 * 120.03951 * 180.02562 * 15 14 13 46 46 H 1.08997 * 109.46771 * 270.00212 * 18 17 16 47 47 H 1.09007 * 109.47241 * 29.99655 * 18 17 16 48 48 H 1.08994 * 109.47571 * 149.99962 * 18 17 16 49 49 H 1.09004 * 109.46925 * 150.00358 * 19 17 16 50 50 H 1.09004 * 109.47352 * 30.00815 * 19 17 16 51 51 H 0.96996 * 120.00769 * 359.97438 * 23 22 20 52 52 H 1.08001 * 120.03902 * 179.72597 * 28 16 15 53 53 H 1.08000 * 119.96503 * 180.25598 * 29 28 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.3424 2.0770 -0.5468 5 6 3.4037 1.4990 -0.6551 6 8 3.6304 2.3309 -1.5081 7 7 4.3584 0.6354 -0.2973 8 6 4.0858 -0.3673 0.7461 9 6 3.9679 0.3547 2.0912 10 6 2.5556 0.8646 2.3056 11 7 2.1621 1.9221 1.3829 12 6 0.9218 2.5728 1.8258 13 6 1.0488 2.9613 3.2764 14 6 1.5501 4.2045 3.6163 15 6 1.6682 4.5635 4.9445 16 6 1.2823 3.6745 5.9397 17 7 1.4010 4.0342 7.2841 18 6 1.9323 5.3506 7.6461 19 6 0.9930 3.0955 8.3322 20 6 -0.4610 3.3131 8.6633 21 1 -1.0249 4.0742 8.1446 22 6 -1.0713 2.5404 9.6285 23 7 -0.3845 1.6140 10.2605 24 14 -2.8738 2.8096 10.0384 25 1 -2.9896 3.8161 11.1243 26 1 -3.5881 3.2990 8.8320 27 1 -3.4767 1.5281 10.4849 28 6 0.7837 2.4247 5.5949 29 6 0.6633 2.0740 4.2645 30 1 -0.3633 0.4076 0.9434 31 1 -0.3633 0.6134 -0.8246 32 1 -0.3634 -1.0207 -0.1188 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 5.2287 0.6686 -0.7241 36 1 3.1521 -0.8839 0.5238 37 1 4.9035 -1.0868 0.7861 38 1 4.2254 -0.3369 2.8933 39 1 4.6594 1.1972 2.1080 40 1 2.4740 1.2441 3.3242 41 1 1.8639 0.0298 2.1929 42 1 0.0867 1.8826 1.7064 43 1 0.7448 3.4648 1.2250 44 1 1.8503 4.8951 2.8420 45 1 2.0594 5.5348 5.2093 46 1 3.0149 5.2876 7.7561 47 1 1.6878 6.0689 6.8634 48 1 1.4897 5.6747 8.5878 49 1 1.5974 3.2616 9.2240 50 1 1.1368 2.0737 7.9809 51 1 0.5514 1.4739 10.0475 52 1 0.4869 1.7294 6.3662 53 1 0.2718 1.1040 3.9956 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000898541648.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:09:39 Heat of formation + Delta-G solvation = 10.044619 kcal Electronic energy + Delta-G solvation = -31372.360874 eV Core-core repulsion = 27437.094235 eV Total energy + Delta-G solvation = -3935.266640 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -42.02758 -40.54241 -38.97848 -37.49239 -36.20631 -35.03363 -33.90021 -32.59740 -31.92260 -31.09754 -29.36414 -28.37651 -27.34838 -26.32767 -25.11152 -24.37548 -23.40989 -23.10380 -21.40288 -21.04826 -20.39427 -19.10785 -18.36275 -18.26442 -17.94547 -16.90950 -16.83602 -16.28330 -16.00718 -15.74673 -15.57840 -15.55366 -15.24054 -15.04625 -14.75759 -14.49523 -14.35468 -14.32192 -14.09668 -13.90834 -13.60187 -13.36285 -13.32802 -13.22373 -13.16148 -13.00513 -12.71028 -12.54061 -12.48910 -12.46030 -12.15739 -11.98502 -11.95630 -11.79846 -11.51312 -11.27668 -11.08084 -10.85078 -10.61338 -10.35660 -9.98434 -9.69883 -9.11862 -8.76851 -7.92548 -6.44789 0.63586 0.73904 1.50131 1.57115 1.57646 1.76433 2.41440 2.43930 2.55269 2.85867 3.09444 3.25814 3.47236 3.73330 3.91393 3.93205 3.96866 4.07016 4.11520 4.16247 4.25285 4.33786 4.42767 4.45930 4.52167 4.54625 4.58240 4.62372 4.69653 4.72836 4.74844 4.76726 4.78632 4.84918 4.95501 4.98453 5.00375 5.03118 5.09010 5.20271 5.24321 5.35829 5.42927 5.53985 5.59221 5.83702 5.84040 5.90598 5.99236 6.02057 6.15315 6.17020 6.31411 6.43723 6.61933 6.82223 7.27029 7.34226 8.66584 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.016001 B = 0.002543 C = 0.002439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1749.423618 B =11006.951185 C =11479.295733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.172 4.172 3 C 0.076 3.924 4 H 0.103 0.897 5 C 0.532 3.468 6 O -0.602 6.602 7 N -0.710 5.710 8 C 0.078 3.922 9 C -0.136 4.136 10 C 0.032 3.968 11 N -0.534 5.534 12 C 0.114 3.886 13 C -0.155 4.155 14 C -0.050 4.050 15 C -0.218 4.218 16 C 0.213 3.787 17 N -0.629 5.629 18 C 0.098 3.902 19 C 0.255 3.745 20 C -0.615 4.615 21 H 0.040 0.960 22 C -0.026 4.026 23 N -0.931 5.931 24 Si 1.116 2.884 25 H -0.272 1.272 26 H -0.277 1.277 27 H -0.279 1.279 28 C -0.213 4.213 29 C -0.056 4.056 30 H 0.055 0.945 31 H 0.057 0.943 32 H 0.070 0.930 33 H 0.079 0.921 34 H 0.115 0.885 35 H 0.403 0.597 36 H 0.112 0.888 37 H 0.114 0.886 38 H 0.097 0.903 39 H 0.056 0.944 40 H 0.073 0.927 41 H 0.060 0.940 42 H 0.060 0.940 43 H 0.083 0.917 44 H 0.133 0.867 45 H 0.128 0.872 46 H 0.053 0.947 47 H 0.078 0.922 48 H 0.054 0.946 49 H 0.002 0.998 50 H 0.009 0.991 51 H 0.257 0.743 52 H 0.095 0.905 53 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.476 -5.282 -20.503 22.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.210 4.210 3 C -0.035 4.035 4 H 0.121 0.879 5 C 0.318 3.682 6 O -0.483 6.483 7 N -0.361 5.361 8 C -0.045 4.045 9 C -0.175 4.175 10 C -0.095 4.095 11 N -0.259 5.259 12 C -0.012 4.012 13 C -0.157 4.157 14 C -0.070 4.070 15 C -0.241 4.241 16 C 0.109 3.891 17 N -0.336 5.336 18 C -0.045 4.045 19 C 0.133 3.867 20 C -0.654 4.654 21 H 0.058 0.942 22 C -0.225 4.225 23 N -0.568 5.568 24 Si 0.938 3.062 25 H -0.198 1.198 26 H -0.202 1.202 27 H -0.204 1.204 28 C -0.236 4.236 29 C -0.075 4.075 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.089 0.911 33 H 0.098 0.902 34 H 0.132 0.868 35 H 0.240 0.760 36 H 0.129 0.871 37 H 0.132 0.868 38 H 0.116 0.884 39 H 0.075 0.925 40 H 0.092 0.908 41 H 0.078 0.922 42 H 0.078 0.922 43 H 0.101 0.899 44 H 0.151 0.849 45 H 0.146 0.854 46 H 0.071 0.929 47 H 0.096 0.904 48 H 0.073 0.927 49 H 0.020 0.980 50 H 0.027 0.973 51 H 0.067 0.933 52 H 0.113 0.887 53 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 5.586 -4.994 -19.651 21.031 hybrid contribution 1.227 0.211 -0.438 1.320 sum 6.813 -4.784 -20.090 21.746 Atomic orbital electron populations 1.21936 0.94311 1.02936 1.02094 1.22797 0.97697 0.95601 1.04918 1.22062 0.92926 0.97923 0.90625 0.87858 1.20796 0.87503 0.79221 0.80685 1.90700 1.82775 1.38980 1.35847 1.45955 1.15372 1.34322 1.40446 1.22738 1.05918 0.90385 0.85422 1.21848 0.96286 1.00761 0.98569 1.21956 0.96973 0.93436 0.97097 1.61093 1.33511 1.31138 1.00167 1.20987 0.90005 0.98971 0.91222 1.19404 1.06484 0.95235 0.94594 1.20853 0.95393 0.96011 0.94700 1.20758 1.10673 1.00257 0.92404 1.18217 0.93073 0.93641 0.84181 1.46769 1.67375 1.16647 1.02852 1.21590 0.97830 0.83996 1.01038 1.18887 0.94084 0.88429 0.85343 1.22620 0.97076 1.21774 1.23937 0.94177 1.27195 1.09816 0.92431 0.93024 1.70903 1.10459 1.32884 1.42556 0.82930 0.69964 0.76748 0.76595 1.19786 1.20241 1.20436 1.20717 1.08917 0.96791 0.97156 1.20798 0.96912 0.99000 0.90839 0.92576 0.92424 0.91077 0.90234 0.86769 0.76025 0.87056 0.86823 0.88423 0.92475 0.90837 0.92213 0.92210 0.89873 0.84867 0.85417 0.92892 0.90364 0.92681 0.97980 0.97318 0.93323 0.88696 0.85268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.83 9.53 71.98 0.69 -1.15 16 2 C -0.17 -2.10 3.49 30.59 0.11 -2.00 16 3 C 0.08 1.39 2.33 44.40 0.10 1.50 16 4 H 0.10 2.03 7.38 -2.39 -0.02 2.02 16 5 C 0.53 11.97 6.85 88.06 0.60 12.58 16 6 O -0.60 -19.20 17.92 -3.04 -0.05 -19.25 16 7 N -0.71 -10.96 5.32 -461.97 -2.46 -13.42 16 8 C 0.08 0.75 6.41 86.27 0.55 1.31 16 9 C -0.14 -1.94 5.86 30.20 0.18 -1.76 16 10 C 0.03 0.58 4.34 86.09 0.37 0.95 16 11 N -0.53 -10.71 4.44 -884.34 -3.93 -14.64 16 12 C 0.11 2.39 5.08 85.56 0.43 2.83 16 13 C -0.15 -4.15 4.34 -19.84 -0.09 -4.23 16 14 C -0.05 -1.44 9.69 22.25 0.22 -1.23 16 15 C -0.22 -7.19 9.21 22.40 0.21 -6.99 16 16 C 0.21 8.48 6.55 38.21 0.25 8.73 16 17 N -0.63 -27.19 2.99 -726.58 -2.17 -29.36 16 18 C 0.10 3.44 10.19 127.77 1.30 4.74 16 19 C 0.25 13.04 4.23 85.63 0.36 13.41 16 20 C -0.62 -34.40 9.39 25.60 0.24 -34.16 16 21 H 0.04 2.31 7.81 -2.91 -0.02 2.28 16 22 C -0.03 -1.45 5.46 84.66 0.46 -0.99 16 23 N -0.93 -55.32 13.65 21.45 0.29 -55.03 16 24 Si 1.12 49.66 29.90 68.60 2.05 51.71 16 25 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 26 H -0.28 -11.73 7.11 99.48 0.71 -11.03 16 27 H -0.28 -12.18 7.11 99.48 0.71 -11.48 16 28 C -0.21 -8.37 9.21 22.40 0.21 -8.16 16 29 C -0.06 -1.71 7.58 22.25 0.17 -1.54 16 30 H 0.06 0.74 5.81 -2.38 -0.01 0.73 16 31 H 0.06 0.69 7.96 -2.39 -0.02 0.68 16 32 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.08 0.87 7.63 -2.39 -0.02 0.86 16 34 H 0.11 1.18 2.79 -2.38 -0.01 1.18 16 35 H 0.40 5.51 8.92 -92.71 -0.83 4.68 16 36 H 0.11 0.86 3.70 -2.39 -0.01 0.85 16 37 H 0.11 0.50 8.14 -2.39 -0.02 0.48 16 38 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 39 H 0.06 1.08 8.05 -2.38 -0.02 1.06 16 40 H 0.07 1.72 4.93 -2.38 -0.01 1.71 16 41 H 0.06 0.87 5.44 -2.39 -0.01 0.86 16 42 H 0.06 1.10 5.37 -2.39 -0.01 1.09 16 43 H 0.08 1.71 8.08 -2.39 -0.02 1.69 16 44 H 0.13 3.25 8.06 -2.91 -0.02 3.23 16 45 H 0.13 3.77 6.14 -2.91 -0.02 3.75 16 46 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 47 H 0.08 2.36 6.20 -2.38 -0.01 2.34 16 48 H 0.05 2.01 8.07 -2.39 -0.02 1.99 16 49 H 0.00 0.12 7.94 -2.38 -0.02 0.10 16 50 H 0.01 0.48 6.05 -2.39 -0.01 0.47 16 51 H 0.26 15.36 7.22 -92.71 -0.67 14.69 16 52 H 0.09 4.32 6.14 -2.91 -0.02 4.30 16 53 H 0.13 3.30 8.05 -2.91 -0.02 3.28 16 Total: -1.00 -71.97 395.60 0.31 -71.67 By element: Atomic # 1 Polarization: 24.27 SS G_CDS: 0.21 Total: 24.48 kcal Atomic # 6 Polarization: -22.53 SS G_CDS: 6.37 Total: -16.16 kcal Atomic # 7 Polarization: -104.18 SS G_CDS: -8.27 Total: -112.45 kcal Atomic # 8 Polarization: -19.20 SS G_CDS: -0.05 Total: -19.25 kcal Atomic # 14 Polarization: 49.66 SS G_CDS: 2.05 Total: 51.71 kcal Total: -71.97 0.31 -71.67 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000898541648.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.710 kcal (2) G-P(sol) polarization free energy of solvation -71.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.665 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds