Wall clock time and date at job start Wed Apr 1 2020 04:09:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52992 * 109.47027 * 2 1 4 4 H 1.08995 * 109.73633 * 32.24103 * 3 2 1 5 5 C 1.51400 * 109.60129 * 152.64398 * 3 2 1 6 6 O 1.21278 * 119.88483 * 228.40513 * 5 3 2 7 7 N 1.33615 * 120.23004 * 48.41091 * 5 3 2 8 8 C 1.47243 * 119.84871 * 0.52900 * 7 5 3 9 9 C 1.53107 * 108.40134 * 69.98412 * 8 7 5 10 10 C 1.51682 * 110.75830 * 274.40924 * 9 8 7 11 11 N 1.45752 * 113.94178 * 66.77431 * 10 9 8 12 12 C 1.46901 * 111.00307 * 167.27643 * 11 10 9 13 13 C 1.50701 * 109.46888 * 293.68189 * 12 11 10 14 14 C 1.38287 * 119.92093 * 96.20496 * 13 12 11 15 15 C 1.38110 * 120.07345 * 180.02562 * 14 13 12 16 16 C 1.38918 * 119.92069 * 0.02562 * 15 14 13 17 17 N 1.39679 * 120.06895 * 179.97438 * 16 15 14 18 18 C 1.46494 * 120.00114 * 0.02562 * 17 16 15 19 19 C 1.46502 * 119.99623 * 179.97438 * 17 16 15 20 20 C 1.50697 * 109.47240 * 90.00315 * 19 17 16 21 21 H 1.08003 * 120.00013 * 359.97438 * 20 19 17 22 22 C 1.37877 * 120.00081 * 180.27720 * 20 19 17 23 23 N 1.31511 * 119.99957 * 359.72108 * 22 20 19 24 24 Si 1.86791 * 119.99976 * 179.72524 * 22 20 19 25 25 H 1.48502 * 109.47380 * 89.99408 * 24 22 20 26 26 H 1.48503 * 109.47390 * 209.99726 * 24 22 20 27 27 H 1.48504 * 109.47374 * 329.99432 * 24 22 20 28 28 C 1.38904 * 119.85250 * 0.24712 * 16 15 14 29 29 C 1.38108 * 119.92653 * 359.50079 * 28 16 15 30 30 H 1.08998 * 109.47238 * 177.74387 * 1 2 3 31 31 H 1.08998 * 109.46772 * 297.74691 * 1 2 3 32 32 H 1.08998 * 109.46547 * 57.74499 * 1 2 3 33 33 H 1.08999 * 109.46714 * 240.00049 * 2 1 3 34 34 H 1.09000 * 109.46875 * 120.00086 * 2 1 3 35 35 H 0.97007 * 120.07204 * 180.50698 * 7 5 3 36 36 H 1.08998 * 109.67619 * 310.25437 * 8 7 5 37 37 H 1.08997 * 109.70646 * 189.73121 * 8 7 5 38 38 H 1.09007 * 109.22059 * 154.07924 * 9 8 7 39 39 H 1.08999 * 109.18431 * 34.71742 * 9 8 7 40 40 H 1.08999 * 108.59066 * 305.61880 * 10 9 8 41 41 H 1.09005 * 108.47623 * 187.84590 * 10 9 8 42 42 H 1.08998 * 109.46956 * 173.68219 * 12 11 10 43 43 H 1.08997 * 109.47151 * 53.67856 * 12 11 10 44 44 H 1.07997 * 119.97002 * 0.02562 * 14 13 12 45 45 H 1.08000 * 120.04196 * 180.02562 * 15 14 13 46 46 H 1.08997 * 109.47026 * 269.99566 * 18 17 16 47 47 H 1.08998 * 109.47519 * 29.99838 * 18 17 16 48 48 H 1.09004 * 109.46873 * 149.99866 * 18 17 16 49 49 H 1.09006 * 109.47047 * 329.99864 * 19 17 16 50 50 H 1.09003 * 109.46982 * 210.00152 * 19 17 16 51 51 H 0.97001 * 120.00087 * 180.02562 * 23 22 20 52 52 H 1.08005 * 120.03837 * 179.72265 * 28 16 15 53 53 H 1.07997 * 119.96753 * 180.24840 * 29 28 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.3446 2.0787 0.5473 5 6 3.4037 1.4991 0.6554 6 8 3.6303 2.3314 1.5078 7 7 4.3583 0.6353 0.2979 8 6 4.0860 -0.3674 -0.7455 9 6 3.9684 0.3545 -2.0906 10 6 2.5561 0.8644 -2.3055 11 7 2.1623 1.9219 -1.3830 12 6 0.9220 2.5723 -1.8263 13 6 1.1739 3.3067 -3.1179 14 6 0.8717 2.7030 -4.3248 15 6 1.1017 3.3729 -5.5105 16 6 1.6378 4.6543 -5.4896 17 7 1.8722 5.3345 -6.6869 18 6 1.5521 4.6968 -7.9664 19 6 2.4370 6.6860 -6.6630 20 6 3.9410 6.6028 -6.7089 21 1 4.4275 5.6394 -6.7512 22 6 4.6962 7.7562 -6.6907 23 7 4.1038 8.9292 -6.6387 24 14 6.5606 7.6527 -6.7398 25 1 7.0203 7.6699 -8.1518 26 1 7.1400 8.8130 -6.0165 27 1 7.0038 6.3930 -6.0903 28 6 1.9454 5.2555 -4.2758 29 6 1.7080 4.5820 -3.0936 30 1 -0.3633 -1.0268 -0.0405 31 1 -0.3633 0.4784 0.9095 32 1 -0.3632 0.5485 -0.8691 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8900 35 1 5.2288 0.6689 0.7245 36 1 3.1523 -0.8840 -0.5233 37 1 4.9033 -1.0874 -0.7855 38 1 4.2262 -0.3371 -2.8928 39 1 4.6603 1.1966 -2.1068 40 1 1.8644 0.0296 -2.1928 41 1 2.4773 1.2446 -3.3240 42 1 0.5903 3.2788 -1.0654 43 1 0.1514 1.8174 -1.9819 44 1 0.4553 1.7067 -4.3404 45 1 0.8651 2.9012 -6.4527 46 1 2.4202 4.1426 -8.3232 47 1 0.7144 4.0126 -7.8319 48 1 1.2837 5.4609 -8.6960 49 1 2.1288 7.1925 -5.7483 50 1 2.0776 7.2453 -7.5268 51 1 4.6351 9.7407 -6.6262 52 1 2.3665 6.2499 -4.2562 53 1 1.9432 5.0503 -2.1493 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000898555703.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:09:44 Heat of formation + Delta-G solvation = 10.405835 kcal Electronic energy + Delta-G solvation = -31337.696174 eV Core-core repulsion = 27402.445198 eV Total energy + Delta-G solvation = -3935.250976 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.96032 -40.41818 -38.93056 -37.36699 -36.15391 -34.80549 -33.86228 -32.57606 -31.87459 -31.05916 -29.62922 -28.37445 -27.26329 -26.49320 -25.04960 -24.24893 -23.40174 -22.91126 -21.32293 -20.94064 -20.40618 -18.66301 -18.31315 -18.25831 -17.89382 -16.94877 -16.81430 -16.47347 -15.95284 -15.84912 -15.51718 -15.33378 -15.22282 -14.98124 -14.64564 -14.48617 -14.33294 -14.26003 -14.01483 -13.87886 -13.57026 -13.25134 -13.18801 -13.16761 -13.05282 -12.89337 -12.69765 -12.53335 -12.51795 -12.40739 -12.27404 -12.07627 -11.91548 -11.77214 -11.73970 -11.40215 -11.05946 -10.83582 -10.65561 -10.39209 -9.96941 -9.63371 -9.05931 -8.37450 -7.79770 -6.38916 0.72878 0.82371 1.33625 1.35904 1.46296 1.58718 2.32518 2.43474 2.64045 2.91598 3.04466 3.33288 3.50302 3.77234 3.94021 3.99175 4.02974 4.12824 4.17395 4.23488 4.33402 4.43234 4.45441 4.49081 4.55800 4.62228 4.68862 4.71968 4.74890 4.78283 4.82031 4.88479 4.92791 4.99347 5.02325 5.04112 5.10764 5.14507 5.18233 5.22316 5.33928 5.39740 5.47922 5.59269 5.67184 5.69975 5.89756 5.94303 6.06106 6.08096 6.22841 6.23900 6.35089 6.49777 6.82078 6.95315 7.27581 7.32920 8.81494 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.012139 B = 0.002891 C = 0.002589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2306.083331 B = 9681.484742 C =10810.963130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.170 4.170 3 C 0.078 3.922 4 H 0.098 0.902 5 C 0.526 3.474 6 O -0.608 6.608 7 N -0.713 5.713 8 C 0.078 3.922 9 C -0.140 4.140 10 C 0.039 3.961 11 N -0.546 5.546 12 C 0.120 3.880 13 C -0.153 4.153 14 C -0.053 4.053 15 C -0.214 4.214 16 C 0.214 3.786 17 N -0.632 5.632 18 C 0.100 3.900 19 C 0.267 3.733 20 C -0.540 4.540 21 H 0.048 0.952 22 C 0.012 3.988 23 N -0.927 5.927 24 Si 0.960 3.040 25 H -0.267 1.267 26 H -0.280 1.280 27 H -0.274 1.274 28 C -0.219 4.219 29 C -0.058 4.058 30 H 0.074 0.926 31 H 0.052 0.948 32 H 0.060 0.940 33 H 0.121 0.879 34 H 0.076 0.924 35 H 0.401 0.599 36 H 0.118 0.882 37 H 0.113 0.887 38 H 0.106 0.894 39 H 0.045 0.955 40 H 0.074 0.926 41 H 0.074 0.926 42 H 0.073 0.927 43 H 0.073 0.927 44 H 0.151 0.849 45 H 0.137 0.863 46 H 0.039 0.961 47 H 0.087 0.913 48 H 0.059 0.941 49 H 0.007 0.993 50 H 0.010 0.990 51 H 0.267 0.733 52 H 0.087 0.913 53 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.734 -26.581 9.224 29.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.208 4.208 3 C -0.034 4.034 4 H 0.117 0.883 5 C 0.313 3.687 6 O -0.489 6.489 7 N -0.364 5.364 8 C -0.044 4.044 9 C -0.179 4.179 10 C -0.088 4.088 11 N -0.272 5.272 12 C -0.006 4.006 13 C -0.156 4.156 14 C -0.072 4.072 15 C -0.237 4.237 16 C 0.109 3.891 17 N -0.340 5.340 18 C -0.043 4.043 19 C 0.145 3.855 20 C -0.579 4.579 21 H 0.066 0.934 22 C -0.188 4.188 23 N -0.567 5.567 24 Si 0.785 3.215 25 H -0.192 1.192 26 H -0.205 1.205 27 H -0.199 1.199 28 C -0.242 4.242 29 C -0.077 4.077 30 H 0.093 0.907 31 H 0.071 0.929 32 H 0.079 0.921 33 H 0.138 0.862 34 H 0.095 0.905 35 H 0.237 0.763 36 H 0.135 0.865 37 H 0.131 0.869 38 H 0.124 0.876 39 H 0.064 0.936 40 H 0.091 0.909 41 H 0.092 0.908 42 H 0.091 0.909 43 H 0.090 0.910 44 H 0.169 0.831 45 H 0.155 0.845 46 H 0.058 0.942 47 H 0.106 0.894 48 H 0.078 0.922 49 H 0.025 0.975 50 H 0.028 0.972 51 H 0.076 0.924 52 H 0.106 0.894 53 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -7.378 -25.534 9.345 28.173 hybrid contribution 1.259 0.892 0.060 1.544 sum -6.120 -24.642 9.405 27.076 Atomic orbital electron populations 1.21920 0.93928 1.03110 1.02232 1.22788 0.97977 0.94976 1.05023 1.22048 0.92401 0.98379 0.90543 0.88345 1.21004 0.87887 0.79133 0.80706 1.90702 1.82933 1.39048 1.36208 1.46014 1.15273 1.34478 1.40621 1.22780 1.06094 0.90245 0.85328 1.21893 0.96601 1.00591 0.98783 1.21874 0.96882 0.93374 0.96675 1.60910 1.34295 1.31693 1.00316 1.20917 0.89509 0.96749 0.93429 1.19442 1.06381 0.94639 0.95148 1.20931 0.96742 0.99256 0.90289 1.20814 1.09094 0.93747 1.00005 1.18214 0.92724 0.92199 0.85928 1.46951 1.66629 1.16721 1.03696 1.21599 1.00116 0.97989 0.84571 1.18763 0.92086 0.79036 0.95592 1.21777 0.92972 0.92382 1.50794 0.93373 1.25778 1.03548 0.94842 0.94585 1.70031 1.37466 0.98065 1.51102 0.85525 0.79724 0.77649 0.78622 1.19222 1.20530 1.19874 1.20731 1.09532 1.01225 0.92725 1.20714 0.96044 0.95028 0.95931 0.90663 0.92923 0.92084 0.86212 0.90519 0.76312 0.86492 0.86909 0.87604 0.93639 0.90867 0.90770 0.90886 0.90957 0.83134 0.84538 0.94218 0.89434 0.92171 0.97468 0.97164 0.92408 0.89444 0.87474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 9.68 71.99 0.70 -0.70 16 2 C -0.17 -1.82 3.49 30.59 0.11 -1.71 16 3 C 0.08 1.50 2.33 44.39 0.10 1.60 16 4 H 0.10 2.11 7.25 -2.39 -0.02 2.09 16 5 C 0.53 13.24 6.85 88.06 0.60 13.84 16 6 O -0.61 -21.74 17.92 -3.02 -0.05 -21.79 16 7 N -0.71 -12.53 5.32 -462.01 -2.46 -14.99 16 8 C 0.08 0.75 6.41 86.27 0.55 1.30 16 9 C -0.14 -1.96 5.86 30.20 0.18 -1.78 16 10 C 0.04 0.61 4.68 86.09 0.40 1.02 16 11 N -0.55 -11.45 4.32 -884.36 -3.82 -15.26 16 12 C 0.12 2.49 4.74 85.56 0.41 2.90 16 13 C -0.15 -4.23 4.73 -19.84 -0.09 -4.32 16 14 C -0.05 -1.33 8.08 22.25 0.18 -1.15 16 15 C -0.21 -6.57 9.21 22.40 0.21 -6.36 16 16 C 0.21 8.68 6.55 38.21 0.25 8.93 16 17 N -0.63 -27.71 2.99 -726.56 -2.17 -29.88 16 18 C 0.10 3.40 10.23 127.77 1.31 4.71 16 19 C 0.27 14.30 4.95 85.63 0.42 14.73 16 20 C -0.54 -31.12 9.39 25.60 0.24 -30.88 16 21 H 0.05 2.81 7.81 -2.91 -0.02 2.79 16 22 C 0.01 0.67 5.46 84.66 0.46 1.13 16 23 N -0.93 -55.72 13.29 21.45 0.28 -55.43 16 24 Si 0.96 45.35 29.54 68.60 2.03 47.38 16 25 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 26 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 27 H -0.27 -12.86 7.11 99.48 0.71 -12.15 16 28 C -0.22 -9.51 9.20 22.40 0.21 -9.31 16 29 C -0.06 -2.08 9.72 22.25 0.22 -1.87 16 30 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 31 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.06 0.57 5.64 -2.39 -0.01 0.56 16 33 H 0.12 0.88 2.79 -2.39 -0.01 0.87 16 34 H 0.08 0.78 7.63 -2.39 -0.02 0.76 16 35 H 0.40 6.62 8.92 -92.70 -0.83 5.80 16 36 H 0.12 0.73 3.70 -2.39 -0.01 0.72 16 37 H 0.11 0.50 8.14 -2.39 -0.02 0.48 16 38 H 0.11 0.98 8.14 -2.38 -0.02 0.96 16 39 H 0.04 0.98 8.05 -2.39 -0.02 0.96 16 40 H 0.07 0.71 5.44 -2.39 -0.01 0.70 16 41 H 0.07 1.44 5.65 -2.38 -0.01 1.43 16 42 H 0.07 1.61 7.71 -2.39 -0.02 1.59 16 43 H 0.07 1.08 5.81 -2.39 -0.01 1.07 16 44 H 0.15 2.47 8.06 -2.91 -0.02 2.45 16 45 H 0.14 3.50 6.14 -2.91 -0.02 3.49 16 46 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 47 H 0.09 2.32 6.20 -2.39 -0.01 2.31 16 48 H 0.06 2.01 7.89 -2.38 -0.02 1.99 16 49 H 0.01 0.43 6.21 -2.38 -0.01 0.42 16 50 H 0.01 0.58 7.89 -2.39 -0.02 0.56 16 51 H 0.27 15.11 8.31 -92.71 -0.77 14.33 16 52 H 0.09 4.47 6.15 -2.91 -0.02 4.45 16 53 H 0.11 3.83 8.06 -2.91 -0.02 3.81 16 Total: -1.00 -77.07 398.27 0.37 -76.70 By element: Atomic # 1 Polarization: 21.09 SS G_CDS: 0.11 Total: 21.20 kcal Atomic # 6 Polarization: -14.37 SS G_CDS: 6.45 Total: -7.92 kcal Atomic # 7 Polarization: -107.40 SS G_CDS: -8.16 Total: -115.57 kcal Atomic # 8 Polarization: -21.74 SS G_CDS: -0.05 Total: -21.79 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 2.03 Total: 47.38 kcal Total: -77.07 0.37 -76.70 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000898555703.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.110 kcal (2) G-P(sol) polarization free energy of solvation -77.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.704 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds