Wall clock time and date at job start Wed Apr 1 2020 04:29:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 C 1.53001 * 109.46841 * 2 1 4 4 N 1.46901 * 109.46705 * 119.99904 * 2 1 3 5 5 C 1.46958 * 110.99408 * 175.00302 * 4 2 1 6 6 C 1.53051 * 109.36545 * 183.18906 * 5 4 2 7 7 N 1.46956 * 109.36164 * 301.59955 * 6 5 4 8 8 C 1.46904 * 111.00114 * 183.18659 * 7 6 5 9 9 C 1.52998 * 109.47163 * 169.99741 * 8 7 6 10 10 C 1.50695 * 109.47127 * 179.97438 * 9 8 7 11 11 O 1.21280 * 120.00013 * 0.02562 * 10 9 8 12 12 N 1.34780 * 120.00517 * 180.02562 * 10 9 8 13 13 C 1.39235 * 120.00527 * 174.90387 * 12 10 9 14 14 C 1.39480 * 119.83553 * 145.82821 * 13 12 10 15 15 C 1.36370 * 120.16640 * 180.25512 * 14 13 12 16 16 C 1.40871 * 119.82887 * 359.46925 * 15 14 13 17 17 C 1.41159 * 120.16440 * 180.27543 * 16 15 14 18 18 H 1.07999 * 120.00040 * 154.64885 * 17 16 15 19 19 C 1.39905 * 119.99710 * 334.64831 * 17 16 15 20 20 N 1.30869 * 120.00693 * 343.16175 * 19 17 16 21 21 Si 1.86805 * 119.99529 * 163.15822 * 19 17 16 22 22 H 1.48503 * 109.46979 * 90.00221 * 21 19 17 23 23 H 1.48499 * 109.47144 * 209.99779 * 21 19 17 24 24 H 1.48499 * 109.47388 * 330.00195 * 21 19 17 25 25 C 1.40865 * 119.67122 * 0.26052 * 16 15 14 26 26 C 1.36370 * 119.83298 * 359.97438 * 25 16 15 27 27 C 1.46962 * 110.88299 * 59.31654 * 7 6 5 28 28 C 1.46956 * 111.00258 * 298.79739 * 4 2 1 29 29 H 1.08999 * 109.47045 * 300.00138 * 1 2 3 30 30 H 1.08999 * 109.46587 * 60.00063 * 1 2 3 31 31 H 1.09005 * 109.46720 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47045 * 239.99862 * 2 1 3 33 33 H 1.08997 * 109.46745 * 180.02562 * 3 2 1 34 34 H 1.09002 * 109.47071 * 299.99708 * 3 2 1 35 35 H 1.08999 * 109.47055 * 59.99680 * 3 2 1 36 36 H 1.08994 * 109.49322 * 63.21873 * 5 4 2 37 37 H 1.09006 * 109.48926 * 303.15081 * 5 4 2 38 38 H 1.08996 * 109.49361 * 181.63055 * 6 5 4 39 39 H 1.09006 * 109.48946 * 61.56216 * 6 5 4 40 40 H 1.08998 * 109.46987 * 49.99691 * 8 7 6 41 41 H 1.08998 * 109.46973 * 289.99402 * 8 7 6 42 42 H 1.08998 * 109.47210 * 60.00087 * 9 8 7 43 43 H 1.09004 * 109.47530 * 299.99975 * 9 8 7 44 44 H 0.97007 * 119.99227 * 354.89656 * 12 10 9 45 45 H 1.07994 * 119.91763 * 359.97438 * 14 13 12 46 46 H 1.08000 * 120.08695 * 179.75156 * 15 14 13 47 47 H 0.96996 * 120.00443 * 179.97438 * 20 19 17 48 48 H 1.08010 * 120.08569 * 180.02562 * 25 16 15 49 49 H 1.07995 * 119.92280 * 180.02562 * 26 25 16 50 50 H 1.09001 * 109.48619 * 60.65061 * 27 7 6 51 51 H 1.09002 * 109.48880 * 180.71100 * 27 7 6 52 52 H 1.09006 * 109.48916 * 296.78433 * 28 4 2 53 53 H 1.08996 * 109.48575 * 56.84771 * 28 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 3.4838 -0.8164 1.1752 6 6 3.9463 -1.6110 2.3988 7 7 3.4986 -0.9282 3.6207 8 6 3.9883 -1.6207 4.8202 9 6 3.7200 -0.7560 6.0535 10 6 4.2217 -1.4666 7.2840 11 8 4.7430 -2.5571 7.1844 12 7 4.0912 -0.8904 8.4954 13 6 4.4571 -1.5900 9.6423 14 6 5.0063 -0.9060 10.7268 15 6 5.3719 -1.5852 11.8514 16 6 5.1831 -2.9795 11.9203 17 6 5.5536 -3.6888 13.0832 18 1 5.0691 -4.6238 13.3228 19 6 6.5484 -3.1804 13.9254 20 7 7.3584 -2.2479 13.4930 21 14 6.7203 -3.8327 15.6674 22 1 7.6535 -4.9878 15.6736 23 1 7.2531 -2.7613 16.5469 24 1 5.3911 -4.2676 16.1667 25 6 4.6226 -3.6624 10.8232 26 6 4.2663 -2.9704 9.7034 27 6 2.0345 -0.8042 3.6450 28 6 1.5721 -0.0097 2.4214 29 1 -0.3633 0.5138 0.8900 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6766 1.9563 0.8899 36 1 3.9333 0.1763 1.1951 37 1 3.7898 -1.3363 0.2672 38 1 5.0341 -1.6794 2.3982 39 1 3.5186 -2.6130 2.3647 40 1 5.0598 -1.7968 4.7260 41 1 3.4712 -2.5744 4.9257 42 1 2.6485 -0.5798 6.1477 43 1 4.2371 0.1978 5.9481 44 1 3.7424 0.0119 8.5682 45 1 5.1466 0.1635 10.6740 46 1 5.8007 -1.0549 12.6888 47 1 8.0478 -1.8952 14.0771 48 1 4.4745 -4.7313 10.8690 49 1 3.8361 -3.4924 8.8616 50 1 1.5851 -1.7970 3.6251 51 1 1.7286 -0.2844 4.5530 52 1 1.9998 0.9923 2.4555 53 1 0.4843 0.0587 2.4220 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000899983929.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:29:02 Heat of formation + Delta-G solvation = -26.315182 kcal Electronic energy + Delta-G solvation = -29477.827218 eV Core-core repulsion = 25540.983899 eV Total energy + Delta-G solvation = -3936.843319 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -41.27610 -40.57107 -39.12656 -37.64394 -36.17486 -34.74760 -33.67732 -31.90614 -31.61034 -31.39776 -30.45043 -28.10087 -27.45904 -26.39068 -24.76451 -23.97535 -23.11294 -22.32390 -21.74305 -20.94899 -20.09756 -19.29480 -18.38264 -17.99597 -17.19579 -17.03522 -16.78566 -16.16992 -16.03826 -15.75067 -15.69156 -15.57814 -15.23904 -15.01544 -14.78835 -14.68405 -14.29268 -14.11414 -13.94492 -13.81542 -13.65743 -13.21859 -13.19668 -12.99144 -12.86634 -12.78074 -12.74520 -12.61324 -12.47048 -12.37079 -12.21965 -11.96149 -11.78495 -11.77456 -11.50524 -11.44605 -11.38233 -11.15099 -10.82175 -10.59320 -9.48312 -9.43960 -9.17049 -8.85355 -8.60590 -6.28249 0.80142 1.12823 1.38963 1.44098 1.54098 1.84501 2.21407 2.28169 2.74464 2.94126 2.98944 3.71092 3.79139 3.86643 3.91752 4.01200 4.11860 4.20267 4.23654 4.34728 4.38932 4.40193 4.45910 4.48105 4.49776 4.51517 4.63287 4.77277 4.81559 4.84478 4.89260 4.92224 4.93963 4.96295 4.99745 5.04151 5.05640 5.11289 5.15859 5.17281 5.31923 5.34040 5.41529 5.44828 5.65033 5.89102 5.92539 6.00106 6.02992 6.10235 6.18415 6.23067 6.36466 6.64107 6.76894 6.92232 6.98796 7.44647 8.32959 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.040376 B = 0.001541 C = 0.001537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 693.307201 B =18163.889088 C =18218.802168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.075 3.925 3 C -0.181 4.181 4 N -0.546 5.546 5 C 0.062 3.938 6 C 0.056 3.944 7 N -0.536 5.536 8 C 0.079 3.921 9 C -0.116 4.116 10 C 0.497 3.503 11 O -0.581 6.581 12 N -0.644 5.644 13 C 0.009 3.991 14 C -0.113 4.113 15 C -0.170 4.170 16 C 0.073 3.927 17 C -0.497 4.497 18 H 0.074 0.926 19 C 0.035 3.965 20 N -0.825 5.825 21 Si 0.984 3.016 22 H -0.265 1.265 23 H -0.263 1.263 24 H -0.259 1.259 25 C -0.234 4.234 26 C -0.088 4.088 27 C 0.049 3.951 28 C 0.057 3.943 29 H 0.057 0.943 30 H 0.070 0.930 31 H 0.055 0.945 32 H 0.083 0.917 33 H 0.052 0.948 34 H 0.069 0.931 35 H 0.056 0.944 36 H 0.045 0.955 37 H 0.086 0.914 38 H 0.082 0.918 39 H 0.030 0.970 40 H 0.068 0.932 41 H 0.024 0.976 42 H 0.117 0.883 43 H 0.123 0.877 44 H 0.418 0.582 45 H 0.125 0.875 46 H 0.111 0.889 47 H 0.289 0.711 48 H 0.093 0.907 49 H 0.100 0.900 50 H 0.029 0.971 51 H 0.094 0.906 52 H 0.046 0.954 53 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.143 10.772 -23.465 28.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.033 4.033 3 C -0.240 4.240 4 N -0.271 5.271 5 C -0.066 4.066 6 C -0.073 4.073 7 N -0.261 5.261 8 C -0.049 4.049 9 C -0.156 4.156 10 C 0.286 3.714 11 O -0.461 6.461 12 N -0.290 5.290 13 C -0.085 4.085 14 C -0.133 4.133 15 C -0.190 4.190 16 C 0.070 3.930 17 C -0.526 4.526 18 H 0.092 0.908 19 C -0.180 4.180 20 N -0.451 5.451 21 Si 0.804 3.196 22 H -0.189 1.189 23 H -0.187 1.187 24 H -0.182 1.182 25 C -0.254 4.254 26 C -0.108 4.108 27 C -0.079 4.079 28 C -0.071 4.071 29 H 0.076 0.924 30 H 0.089 0.911 31 H 0.074 0.926 32 H 0.101 0.899 33 H 0.071 0.929 34 H 0.088 0.912 35 H 0.075 0.925 36 H 0.063 0.937 37 H 0.105 0.895 38 H 0.101 0.899 39 H 0.048 0.952 40 H 0.086 0.914 41 H 0.042 0.958 42 H 0.135 0.865 43 H 0.141 0.859 44 H 0.256 0.744 45 H 0.143 0.857 46 H 0.128 0.872 47 H 0.100 0.900 48 H 0.111 0.889 49 H 0.118 0.882 50 H 0.047 0.953 51 H 0.112 0.888 52 H 0.065 0.935 53 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -10.602 10.158 -23.526 27.732 hybrid contribution 0.348 -0.312 0.925 1.036 sum -10.254 9.846 -22.601 26.700 Atomic orbital electron populations 1.21847 0.93655 1.02131 1.02327 1.21741 0.96269 0.92670 0.92625 1.22417 1.01211 0.97674 1.02714 1.62430 1.10774 1.51342 1.02597 1.22111 0.87631 0.99389 0.97473 1.22181 1.00386 0.95540 0.89144 1.62189 1.11412 1.50943 1.01584 1.21617 1.00420 0.94189 0.88705 1.21523 1.04358 1.00540 0.89147 1.21460 0.78286 0.86199 0.85434 1.90695 1.44954 1.23551 1.86905 1.42968 1.63373 1.18733 1.03881 1.17234 1.10528 0.91622 0.89093 1.20508 0.99792 0.99210 0.93770 1.20908 1.05461 0.94067 0.98602 1.17995 0.90035 0.92769 0.92158 1.19789 1.18753 1.07565 1.06533 0.90773 1.26763 0.93103 0.94091 1.04016 1.69877 1.13200 1.23861 1.38145 0.85180 0.79553 0.78866 0.75954 1.18941 1.18704 1.18239 1.20778 1.11749 0.98106 0.94810 1.20338 1.00175 0.93668 0.96626 1.22331 0.86889 0.99416 0.99235 1.22200 1.00706 0.95785 0.88380 0.92421 0.91099 0.92625 0.89927 0.92944 0.91178 0.92509 0.93680 0.89541 0.89940 0.95153 0.91354 0.95793 0.86515 0.85938 0.74448 0.85748 0.87164 0.89990 0.88923 0.88185 0.95268 0.88768 0.93542 0.89155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.39 9.00 71.99 0.65 -0.74 16 2 C 0.07 0.85 2.96 44.92 0.13 0.98 16 3 C -0.18 -1.84 8.49 71.98 0.61 -1.23 16 4 N -0.55 -8.06 4.70 -870.46 -4.09 -12.15 16 5 C 0.06 0.92 5.25 86.31 0.45 1.38 16 6 C 0.06 1.01 5.61 86.31 0.48 1.49 16 7 N -0.54 -10.18 4.71 -895.72 -4.22 -14.40 16 8 C 0.08 1.84 4.25 86.30 0.37 2.21 16 9 C -0.12 -2.42 5.63 29.85 0.17 -2.25 16 10 C 0.50 16.21 7.55 87.66 0.66 16.87 16 11 O -0.58 -25.03 13.71 -3.03 -0.04 -25.07 16 12 N -0.64 -21.12 5.31 -303.11 -1.61 -22.73 16 13 C 0.01 0.39 6.27 38.57 0.24 0.63 16 14 C -0.11 -5.10 9.89 22.13 0.22 -4.88 16 15 C -0.17 -8.96 8.63 22.48 0.19 -8.77 16 16 C 0.07 4.09 5.57 -21.27 -0.12 3.97 16 17 C -0.50 -27.55 9.04 23.39 0.21 -27.34 16 18 H 0.07 3.98 7.90 -2.91 -0.02 3.96 16 19 C 0.04 1.79 5.15 85.24 0.44 2.23 16 20 N -0.82 -43.43 10.95 21.82 0.24 -43.19 16 21 Si 0.98 38.47 29.59 68.60 2.03 40.50 16 22 H -0.26 -10.06 7.11 99.48 0.71 -9.35 16 23 H -0.26 -9.62 7.11 99.48 0.71 -8.91 16 24 H -0.26 -9.92 7.11 99.48 0.71 -9.21 16 25 C -0.23 -12.52 9.74 22.48 0.22 -12.30 16 26 C -0.09 -4.34 8.57 22.13 0.19 -4.15 16 27 C 0.05 0.81 5.41 86.31 0.47 1.28 16 28 C 0.06 0.80 4.81 86.31 0.42 1.22 16 29 H 0.06 0.55 6.36 -2.39 -0.02 0.54 16 30 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.05 0.63 8.14 -2.38 -0.02 0.61 16 32 H 0.08 0.91 8.11 -2.39 -0.02 0.90 16 33 H 0.05 0.59 6.59 -2.39 -0.02 0.58 16 34 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 35 H 0.06 0.62 6.46 -2.39 -0.02 0.60 16 36 H 0.05 0.69 6.60 -2.39 -0.02 0.67 16 37 H 0.09 1.11 8.12 -2.38 -0.02 1.09 16 38 H 0.08 1.44 8.07 -2.39 -0.02 1.42 16 39 H 0.03 0.63 8.14 -2.38 -0.02 0.61 16 40 H 0.07 1.80 7.98 -2.39 -0.02 1.78 16 41 H 0.02 0.65 8.08 -2.39 -0.02 0.63 16 42 H 0.12 1.86 6.49 -2.39 -0.02 1.84 16 43 H 0.12 2.05 8.14 -2.38 -0.02 2.04 16 44 H 0.42 9.87 8.82 -92.70 -0.82 9.05 16 45 H 0.12 4.68 8.06 -2.91 -0.02 4.66 16 46 H 0.11 5.96 6.18 -2.91 -0.02 5.94 16 47 H 0.29 13.67 8.30 -92.71 -0.77 12.90 16 48 H 0.09 4.79 8.06 -2.91 -0.02 4.76 16 49 H 0.10 4.87 6.47 -2.91 -0.02 4.85 16 50 H 0.03 0.57 8.14 -2.39 -0.02 0.55 16 51 H 0.09 1.29 6.34 -2.39 -0.02 1.27 16 52 H 0.05 0.67 6.47 -2.38 -0.02 0.65 16 53 H 0.09 1.09 6.17 -2.39 -0.01 1.08 16 Total: -1.00 -68.28 406.57 -1.59 -69.87 By element: Atomic # 1 Polarization: 36.48 SS G_CDS: 0.09 Total: 36.57 kcal Atomic # 6 Polarization: -35.40 SS G_CDS: 6.00 Total: -29.40 kcal Atomic # 7 Polarization: -82.80 SS G_CDS: -9.68 Total: -92.48 kcal Atomic # 8 Polarization: -25.03 SS G_CDS: -0.04 Total: -25.07 kcal Atomic # 14 Polarization: 38.47 SS G_CDS: 2.03 Total: 40.50 kcal Total: -68.28 -1.59 -69.87 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000899983929.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.559 kcal (2) G-P(sol) polarization free energy of solvation -68.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.52 seconds