Wall clock time and date at job start Wed Apr 1 2020 04:28:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.46872 * 2 1 4 4 N 1.46901 * 109.47175 * 179.97438 * 3 2 1 5 5 C 1.46846 * 111.00268 * 293.95500 * 4 3 2 6 6 C 1.53035 * 109.52520 * 185.83542 * 5 4 3 7 7 C 1.53121 * 109.27948 * 300.82006 * 6 5 4 8 8 C 1.53119 * 109.15840 * 57.65708 * 7 6 5 9 9 H 1.08993 * 109.50640 * 62.32029 * 8 7 6 10 10 C 1.50704 * 109.50260 * 182.40594 * 8 7 6 11 11 O 1.21279 * 120.00222 * 91.93349 * 10 8 7 12 12 N 1.34778 * 119.99770 * 271.94027 * 10 8 7 13 13 C 1.46506 * 119.99817 * 3.00857 * 12 10 8 14 14 C 1.50700 * 109.46990 * 288.81758 * 13 12 10 15 15 H 1.08003 * 119.99735 * 112.73277 * 14 13 12 16 16 C 1.37875 * 120.00002 * 292.72581 * 14 13 12 17 17 N 1.31510 * 119.99925 * 354.56306 * 16 14 13 18 18 Si 1.86799 * 119.99781 * 174.55804 * 16 14 13 19 19 H 1.48495 * 109.47134 * 270.00087 * 18 16 14 20 20 H 1.48497 * 109.47104 * 30.00524 * 18 16 14 21 21 H 1.48502 * 109.46933 * 149.99809 * 18 16 14 22 22 C 1.46496 * 119.99880 * 183.01251 * 12 10 8 23 23 C 1.50706 * 109.47118 * 277.71922 * 22 12 10 24 24 C 1.38227 * 119.61571 * 94.99731 * 23 22 12 25 25 C 1.38627 * 119.16009 * 179.97438 * 24 23 22 26 26 C 1.38671 * 118.42060 * 0.02562 * 25 24 23 27 27 C 1.38186 * 119.16347 * 0.02562 * 26 25 24 28 28 N 1.31852 * 119.61726 * 274.72829 * 23 22 12 29 29 C 1.46850 * 110.99863 * 58.16066 * 4 3 2 30 30 H 1.08996 * 109.47118 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47412 * 300.00031 * 1 2 3 32 32 H 1.09004 * 109.47058 * 60.00227 * 1 2 3 33 33 H 1.09001 * 109.47412 * 239.99969 * 2 1 3 34 34 H 1.09004 * 109.47058 * 119.99773 * 2 1 3 35 35 H 1.09001 * 109.47127 * 59.99795 * 3 2 1 36 36 H 1.08992 * 109.47437 * 299.99885 * 3 2 1 37 37 H 1.09008 * 109.45961 * 65.81819 * 5 4 3 38 38 H 1.08998 * 109.46410 * 305.85611 * 5 4 3 39 39 H 1.08998 * 109.49944 * 180.88100 * 6 5 4 40 40 H 1.08997 * 109.53632 * 60.78516 * 6 5 4 41 41 H 1.09000 * 109.52230 * 297.74632 * 7 6 5 42 42 H 1.08994 * 109.52141 * 177.55830 * 7 6 5 43 43 H 1.09000 * 109.46493 * 168.81882 * 13 12 10 44 44 H 1.09002 * 109.46866 * 48.82112 * 13 12 10 45 45 H 0.96994 * 120.00438 * 352.69826 * 17 16 14 46 46 H 1.09000 * 109.47088 * 37.72155 * 22 12 10 47 47 H 1.09003 * 109.47232 * 157.72081 * 22 12 10 48 48 H 1.08003 * 120.42271 * 359.96382 * 24 23 22 49 49 H 1.07994 * 120.79309 * 179.97438 * 25 24 23 50 50 H 1.08004 * 120.42276 * 179.97438 * 26 25 24 51 51 H 1.08002 * 119.61800 * 179.97438 * 27 26 25 52 52 H 1.09008 * 109.45880 * 54.15066 * 29 4 3 53 53 H 1.08996 * 109.46761 * 294.18000 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5090 1.4426 0.0006 5 6 4.0348 0.8862 1.2537 6 6 5.5576 1.0352 1.2803 7 6 6.1588 0.2976 0.0807 8 6 5.5586 0.8634 -1.2094 9 1 5.8224 1.9169 -1.3020 10 6 6.1007 0.1030 -2.3922 11 8 5.5033 -0.8628 -2.8178 12 7 7.2496 0.4962 -2.9770 13 6 8.0057 1.6221 -2.4228 14 6 7.2611 2.9055 -2.6865 15 1 6.8375 3.4628 -1.8640 16 6 7.1209 3.3683 -3.9777 17 7 7.7264 2.7493 -4.9675 18 14 6.0709 4.8747 -4.3210 19 1 4.6717 4.4531 -4.5844 20 1 6.1022 5.7787 -3.1433 21 1 6.6044 5.5897 -5.5081 22 6 7.7422 -0.2021 -4.1669 23 6 8.4818 -1.4468 -3.7486 24 6 7.8166 -2.6580 -3.7151 25 6 8.5062 -3.7970 -3.3295 26 6 9.8452 -3.6746 -2.9900 27 6 10.4431 -2.4301 -3.0464 28 7 9.7574 -1.3687 -3.4241 29 6 4.0357 0.7192 -1.1637 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 1.6766 1.9564 0.8900 36 1 1.6767 1.9564 -0.8899 37 1 3.7719 -0.1696 1.3208 38 1 3.6026 1.4222 2.0987 39 1 5.9490 0.6081 2.2036 40 1 5.8215 2.0915 1.2276 41 1 5.9287 -0.7653 0.1540 42 1 7.2397 0.4375 0.0715 43 1 8.9872 1.6678 -2.8946 44 1 8.1251 1.4855 -1.3480 45 1 8.3544 2.0341 -4.7805 46 1 6.8999 -0.4762 -4.8021 47 1 8.4161 0.4526 -4.7195 48 1 6.7726 -2.7162 -3.9857 49 1 8.0124 -4.7567 -3.2935 50 1 10.4133 -4.5409 -2.6845 51 1 11.4854 -2.3263 -2.7831 52 1 3.6042 1.1342 -2.0747 53 1 3.7729 -0.3357 -1.0854 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000906565063.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:28:01 Heat of formation + Delta-G solvation = -23.682178 kcal Electronic energy + Delta-G solvation = -32305.597378 eV Core-core repulsion = 28368.868235 eV Total energy + Delta-G solvation = -3936.729143 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.61436 -40.87673 -39.51467 -37.11729 -35.91274 -34.48452 -33.42242 -33.09257 -32.42806 -31.80112 -29.33355 -27.52605 -27.15629 -25.35451 -24.53537 -24.35531 -24.27809 -23.02320 -22.50382 -20.64656 -19.89507 -19.00786 -18.10931 -17.65273 -17.33471 -16.85594 -16.52820 -16.47287 -16.24212 -15.85859 -15.65849 -15.56273 -15.29855 -15.02202 -14.94745 -14.69173 -14.38817 -14.29228 -14.17336 -13.92049 -13.73176 -13.55441 -13.40804 -12.92471 -12.74526 -12.70416 -12.67985 -12.57325 -12.32972 -12.29880 -12.07964 -11.92817 -11.90428 -11.54510 -11.41342 -11.31027 -11.17715 -10.86751 -10.68029 -10.53264 -10.40834 -9.94796 -9.29165 -9.18134 -8.56863 -6.38611 0.09572 0.34262 1.55376 1.59262 1.78111 1.79218 2.28488 2.55637 2.89802 3.01311 3.27690 3.31973 3.73402 3.77197 3.84695 3.92671 3.97750 3.99576 4.08777 4.11346 4.20406 4.21941 4.27646 4.37467 4.39915 4.48011 4.53297 4.58621 4.60692 4.64283 4.65356 4.72909 4.78095 4.82891 4.83459 4.88585 4.94124 4.96836 5.03894 5.14715 5.16029 5.19114 5.22467 5.23557 5.24879 5.37509 5.42401 5.73848 5.77140 5.92235 6.08429 6.14659 6.21930 6.60628 6.74073 7.05896 7.40259 7.44078 8.76296 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.007885 B = 0.004696 C = 0.003420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3550.052533 B = 5960.822741 C = 8184.913203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.160 4.160 3 C 0.057 3.943 4 N -0.546 5.546 5 C 0.056 3.944 6 C -0.107 4.107 7 C -0.097 4.097 8 C -0.104 4.104 9 H 0.110 0.890 10 C 0.519 3.481 11 O -0.599 6.599 12 N -0.579 5.579 13 C 0.229 3.771 14 C -0.613 4.613 15 H 0.060 0.940 16 C -0.004 4.004 17 N -0.920 5.920 18 Si 1.100 2.900 19 H -0.285 1.285 20 H -0.265 1.265 21 H -0.286 1.286 22 C 0.172 3.828 23 C 0.097 3.903 24 C -0.160 4.160 25 C -0.079 4.079 26 C -0.163 4.163 27 C 0.081 3.919 28 N -0.505 5.505 29 C 0.094 3.906 30 H 0.056 0.944 31 H 0.069 0.931 32 H 0.053 0.947 33 H 0.042 0.958 34 H 0.065 0.935 35 H 0.096 0.904 36 H 0.066 0.934 37 H 0.035 0.965 38 H 0.097 0.903 39 H 0.093 0.907 40 H 0.068 0.932 41 H 0.051 0.949 42 H 0.055 0.945 43 H 0.019 0.981 44 H 0.041 0.959 45 H 0.267 0.733 46 H 0.060 0.940 47 H 0.080 0.920 48 H 0.124 0.876 49 H 0.164 0.836 50 H 0.176 0.824 51 H 0.182 0.818 52 H 0.048 0.952 53 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.547 -9.676 11.833 15.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.199 4.199 3 C -0.071 4.071 4 N -0.269 5.269 5 C -0.071 4.071 6 C -0.145 4.145 7 C -0.135 4.135 8 C -0.126 4.126 9 H 0.128 0.872 10 C 0.308 3.692 11 O -0.483 6.483 12 N -0.309 5.309 13 C 0.110 3.890 14 C -0.652 4.652 15 H 0.078 0.922 16 C -0.207 4.207 17 N -0.559 5.559 18 Si 0.924 3.076 19 H -0.212 1.212 20 H -0.189 1.189 21 H -0.212 1.212 22 C 0.047 3.953 23 C -0.041 4.041 24 C -0.181 4.181 25 C -0.105 4.105 26 C -0.182 4.182 27 C -0.076 4.076 28 N -0.215 5.215 29 C -0.035 4.035 30 H 0.075 0.925 31 H 0.088 0.912 32 H 0.072 0.928 33 H 0.060 0.940 34 H 0.084 0.916 35 H 0.114 0.886 36 H 0.085 0.915 37 H 0.053 0.947 38 H 0.116 0.884 39 H 0.111 0.889 40 H 0.087 0.913 41 H 0.070 0.930 42 H 0.074 0.926 43 H 0.038 0.962 44 H 0.059 0.941 45 H 0.081 0.919 46 H 0.079 0.921 47 H 0.098 0.902 48 H 0.142 0.858 49 H 0.181 0.819 50 H 0.193 0.807 51 H 0.199 0.801 52 H 0.066 0.934 53 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -4.825 -7.885 10.342 13.872 hybrid contribution 0.182 -2.450 0.455 2.499 sum -4.643 -10.336 10.798 15.652 Atomic orbital electron populations 1.21645 0.93905 1.02013 1.02414 1.22150 0.97936 0.98480 1.01370 1.22307 0.85620 0.95813 1.03361 1.62069 1.08215 1.54381 1.02209 1.22170 0.95136 0.97977 0.91837 1.21561 0.94824 1.01058 0.97048 1.21397 0.99585 0.99012 0.93541 1.21433 0.95857 1.02591 0.92676 0.87184 1.20899 0.80005 0.83414 0.84841 1.90492 1.60463 1.30114 1.67200 1.48860 1.22859 1.31910 1.27239 1.19276 0.91536 0.84333 0.93847 1.22472 1.39450 1.07526 0.95727 0.92216 1.26886 0.98037 1.03064 0.92710 1.70906 1.25811 1.24405 1.34730 0.83151 0.74795 0.73294 0.76357 1.21179 1.18915 1.21175 1.20113 0.96521 0.90410 0.88258 1.21571 0.90608 0.95132 0.96767 1.22101 1.01214 0.93628 1.01162 1.21961 0.94898 0.98867 0.94766 1.22532 0.95514 0.99832 1.00353 1.23359 1.01054 0.88253 0.94956 1.67457 1.08016 1.34741 1.11277 1.21525 0.92667 0.95986 0.93289 0.92529 0.91248 0.92807 0.93955 0.91640 0.88585 0.91502 0.94666 0.88441 0.88891 0.91315 0.93036 0.92587 0.96229 0.94089 0.91915 0.92117 0.90166 0.85823 0.81878 0.80666 0.80136 0.93355 0.94764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.51 9.91 71.98 0.71 -1.80 16 2 C -0.16 -3.60 5.24 30.59 0.16 -3.44 16 3 C 0.06 1.36 5.36 86.30 0.46 1.82 16 4 N -0.55 -16.10 4.86 -896.34 -4.35 -20.46 16 5 C 0.06 1.36 5.05 86.33 0.44 1.80 16 6 C -0.11 -2.78 6.09 30.65 0.19 -2.59 16 7 C -0.10 -3.24 5.18 30.67 0.16 -3.08 16 8 C -0.10 -4.18 1.90 -11.49 -0.02 -4.20 16 9 H 0.11 4.93 4.91 -2.39 -0.01 4.91 16 10 C 0.52 24.11 6.51 87.66 0.57 24.68 16 11 O -0.60 -29.33 14.60 -3.02 -0.04 -29.37 16 12 N -0.58 -27.65 2.44 -830.48 -2.03 -29.68 16 13 C 0.23 11.25 4.94 85.63 0.42 11.67 16 14 C -0.61 -32.03 7.43 25.60 0.19 -31.84 16 15 H 0.06 3.07 7.11 -2.91 -0.02 3.05 16 16 C 0.00 -0.21 5.41 84.65 0.46 0.25 16 17 N -0.92 -53.24 13.35 21.45 0.29 -52.95 16 18 Si 1.10 49.29 29.91 68.60 2.05 51.34 16 19 H -0.29 -12.68 7.11 99.48 0.71 -11.97 16 20 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 21 H -0.29 -12.79 7.11 99.48 0.71 -12.09 16 22 C 0.17 8.07 5.11 85.64 0.44 8.51 16 23 C 0.10 3.95 6.27 42.55 0.27 4.21 16 24 C -0.16 -5.71 9.15 22.36 0.20 -5.50 16 25 C -0.08 -2.08 10.18 22.47 0.23 -1.85 16 26 C -0.16 -3.71 10.11 22.36 0.23 -3.49 16 27 C 0.08 2.29 11.18 84.67 0.95 3.24 16 28 N -0.50 -19.34 10.27 -183.88 -1.89 -21.23 16 29 C 0.09 3.44 3.70 86.33 0.32 3.76 16 30 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.05 0.97 8.14 -2.38 -0.02 0.95 16 33 H 0.04 1.16 6.51 -2.39 -0.02 1.15 16 34 H 0.06 1.40 6.68 -2.38 -0.02 1.38 16 35 H 0.10 1.86 8.06 -2.39 -0.02 1.84 16 36 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 37 H 0.04 0.85 6.75 -2.38 -0.02 0.83 16 38 H 0.10 1.89 8.06 -2.39 -0.02 1.87 16 39 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 40 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 41 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 42 H 0.06 1.95 6.67 -2.39 -0.02 1.93 16 43 H 0.02 1.03 7.11 -2.39 -0.02 1.02 16 44 H 0.04 1.88 6.24 -2.39 -0.01 1.87 16 45 H 0.27 15.44 4.00 -92.71 -0.37 15.07 16 46 H 0.06 2.98 7.61 -2.39 -0.02 2.96 16 47 H 0.08 4.08 5.35 -2.39 -0.01 4.07 16 48 H 0.12 4.68 7.41 -2.91 -0.02 4.66 16 49 H 0.16 3.08 8.06 -2.91 -0.02 3.06 16 50 H 0.18 2.37 8.06 -2.91 -0.02 2.34 16 51 H 0.18 3.78 8.06 -2.91 -0.02 3.76 16 52 H 0.05 1.97 8.12 -2.38 -0.02 1.95 16 53 H 0.03 1.29 6.29 -2.39 -0.02 1.28 16 Total: -1.00 -67.09 403.51 1.68 -65.41 By element: Atomic # 1 Polarization: 33.50 SS G_CDS: 1.29 Total: 34.79 kcal Atomic # 6 Polarization: -4.22 SS G_CDS: 6.37 Total: 2.15 kcal Atomic # 7 Polarization: -116.33 SS G_CDS: -7.99 Total: -124.32 kcal Atomic # 8 Polarization: -29.33 SS G_CDS: -0.04 Total: -29.37 kcal Atomic # 14 Polarization: 49.29 SS G_CDS: 2.05 Total: 51.34 kcal Total: -67.09 1.68 -65.41 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000906565063.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.730 kcal (2) G-P(sol) polarization free energy of solvation -67.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds