Wall clock time and date at job start Wed Apr 1 2020 04:02:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.46852 * 2 1 4 4 N 1.46498 * 109.47197 * 120.00114 * 2 1 3 5 5 C 1.39678 * 120.00087 * 62.54886 * 4 2 1 6 6 C 1.38916 * 120.07090 * 5.32534 * 5 4 2 7 7 C 1.38103 * 119.91992 * 179.76702 * 6 5 4 8 8 C 1.38282 * 120.07482 * 0.51440 * 7 6 5 9 9 C 1.38283 * 120.15510 * 359.73666 * 8 7 6 10 10 C 1.38112 * 120.06883 * 0.02562 * 9 8 7 11 11 C 1.50697 * 109.47257 * 240.00651 * 2 1 3 12 12 O 1.21283 * 120.00083 * 24.99481 * 11 2 1 13 13 N 1.34778 * 119.99955 * 205.00189 * 11 2 1 14 14 C 1.46500 * 119.99923 * 179.97438 * 13 11 2 15 15 C 1.53001 * 109.46937 * 179.97438 * 14 13 11 16 16 C 1.53043 * 109.45783 * 295.02211 * 15 14 13 17 17 C 1.53198 * 109.30756 * 178.60086 * 16 15 14 18 18 N 1.46923 * 108.76601 * 54.66127 * 17 16 15 19 19 C 1.36938 * 120.62921 * 126.39953 * 18 17 16 20 20 H 1.08003 * 120.00299 * 330.57421 * 19 18 17 21 21 C 1.38817 * 119.99881 * 150.57779 * 19 18 17 22 22 N 1.31620 * 119.99574 * 343.87909 * 21 19 18 23 23 Si 1.86793 * 120.00240 * 163.88102 * 21 19 18 24 24 H 1.48498 * 109.47142 * 89.99983 * 23 21 19 25 25 H 1.48503 * 109.47280 * 209.99955 * 23 21 19 26 26 H 1.48496 * 109.47064 * 330.00204 * 23 21 19 27 27 C 1.46927 * 118.73943 * 306.38165 * 18 17 16 28 28 C 1.53047 * 109.45789 * 174.97496 * 15 14 13 29 29 H 1.09002 * 109.47752 * 54.12189 * 1 2 3 30 30 H 1.09001 * 109.47323 * 294.11621 * 1 2 3 31 31 H 1.09005 * 109.46899 * 174.12280 * 1 2 3 32 32 H 1.09005 * 109.46958 * 64.02104 * 3 2 1 33 33 H 1.08998 * 109.46951 * 184.01952 * 3 2 1 34 34 H 1.09002 * 109.47480 * 304.01859 * 3 2 1 35 35 H 0.97002 * 119.99703 * 242.54307 * 4 2 1 36 36 H 1.08002 * 120.04050 * 0.02562 * 6 5 4 37 37 H 1.07994 * 119.96036 * 180.24952 * 7 6 5 38 38 H 1.08001 * 119.92387 * 179.72330 * 8 7 6 39 39 H 1.07995 * 119.96788 * 179.97438 * 9 8 7 40 40 H 1.08004 * 120.03538 * 179.97438 * 10 9 8 41 41 H 0.96991 * 120.00210 * 359.97438 * 13 11 2 42 42 H 1.08999 * 109.47168 * 299.99503 * 14 13 11 43 43 H 1.09002 * 109.47237 * 59.99781 * 14 13 11 44 44 H 1.08988 * 109.46242 * 55.00394 * 15 14 13 45 45 H 1.08993 * 109.50107 * 298.56708 * 16 15 14 46 46 H 1.09003 * 109.49358 * 58.66917 * 16 15 14 47 47 H 1.08996 * 109.60221 * 294.87047 * 17 16 15 48 48 H 1.09001 * 109.70025 * 174.50866 * 17 16 15 49 49 H 0.97009 * 119.99837 * 179.97438 * 22 21 19 50 50 H 1.09003 * 109.58452 * 293.82144 * 27 18 17 51 51 H 1.09000 * 109.70413 * 173.46203 * 27 18 17 52 52 H 1.09004 * 109.49576 * 301.33382 * 28 15 14 53 53 H 1.08997 * 109.49832 * 61.43492 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 1.7254 -2.0424 1.3906 6 6 1.0671 -2.7614 0.4009 7 6 0.7833 -4.0990 0.5945 8 6 1.1442 -4.7200 1.7762 9 6 1.7950 -4.0060 2.7656 10 6 2.0862 -2.6692 2.5765 11 6 2.0323 -0.7102 -1.2305 12 8 1.3370 -0.7703 -2.2224 13 7 3.2543 -1.2788 -1.2287 14 6 3.7424 -1.9698 -2.4248 15 6 5.1453 -2.5196 -2.1592 16 6 6.1154 -1.3567 -1.9384 17 6 7.5114 -1.9115 -1.6383 18 7 7.9005 -2.8239 -2.7222 19 6 9.0848 -2.6518 -3.3878 20 1 9.5076 -1.6633 -3.4909 21 6 9.7419 -3.7477 -3.9301 22 7 9.4172 -4.9648 -3.5483 23 14 11.0867 -3.4953 -5.2016 24 1 12.3973 -3.3622 -4.5162 25 1 11.1248 -4.6615 -6.1202 26 1 10.8074 -2.2615 -5.9793 27 6 6.9949 -3.9248 -3.0782 28 6 5.6045 -3.3474 -3.3618 29 1 -0.3635 0.6023 -0.8327 30 1 -0.3634 0.4199 0.9380 31 1 -0.3633 -1.0223 -0.1052 32 1 1.7366 1.9351 0.9239 33 1 3.1275 1.4434 -0.0720 34 1 1.6190 1.9768 -0.8518 35 1 2.5452 -0.2091 1.8530 36 1 0.7813 -2.2759 -0.5205 37 1 0.2751 -4.6595 -0.1761 38 1 0.9171 -5.7651 1.9268 39 1 2.0751 -4.4939 3.6874 40 1 2.5941 -2.1120 3.3498 41 1 3.8105 -1.2306 -0.4356 42 1 3.0699 -2.7919 -2.6694 43 1 3.7790 -1.2696 -3.2594 44 1 5.1260 -3.1502 -1.2705 45 1 6.1541 -0.7397 -2.8361 46 1 5.7749 -0.7539 -1.0965 47 1 7.4940 -2.4537 -0.6929 48 1 8.2271 -1.0917 -1.5763 49 1 9.8761 -5.7307 -3.9275 50 1 6.9353 -4.6312 -2.2502 51 1 7.3672 -4.4342 -3.9670 52 1 4.9005 -4.1618 -3.5331 53 1 5.6481 -2.7115 -4.2459 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000906799729.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:02:02 Heat of formation + Delta-G solvation = -10.699705 kcal Electronic energy + Delta-G solvation = -31545.985687 eV Core-core repulsion = 27609.819506 eV Total energy + Delta-G solvation = -3936.166181 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -41.81519 -39.92619 -39.34713 -37.29545 -36.43890 -34.44255 -33.22559 -32.50882 -31.72557 -31.43024 -29.30319 -28.60384 -28.13045 -26.07297 -24.42186 -23.75759 -23.22858 -22.84401 -22.38048 -21.00669 -20.44384 -18.91603 -18.58153 -18.10701 -17.13107 -17.04129 -16.80820 -16.47273 -15.96785 -15.74011 -15.33010 -15.31774 -15.09885 -14.89983 -14.82197 -14.63765 -14.32441 -14.03683 -13.98202 -13.87735 -13.54060 -13.32008 -13.23960 -13.17348 -13.00537 -12.95553 -12.82657 -12.57109 -12.47230 -12.28986 -12.09701 -12.02962 -11.87883 -11.69576 -11.64839 -11.52732 -11.23705 -11.13444 -10.63887 -10.53318 -10.07620 -9.76580 -8.66044 -8.38204 -7.87871 -5.34491 0.56836 0.72263 1.45426 1.47398 1.52234 1.56840 2.14364 2.40037 2.50767 3.02788 3.27096 3.60691 3.69273 3.78516 3.82841 3.90636 3.96256 4.05845 4.07426 4.13688 4.39184 4.48146 4.51211 4.55797 4.65138 4.66205 4.67452 4.69778 4.74148 4.75119 4.77929 4.81198 4.91108 4.96940 5.00010 5.10745 5.12849 5.18931 5.23144 5.25624 5.26883 5.35935 5.40633 5.45345 5.52864 5.64742 5.64974 5.75972 5.79366 5.91580 6.33271 6.39733 6.54881 6.86137 7.15202 7.19673 7.86747 8.38768 9.18355 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.014536 B = 0.002699 C = 0.002490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1925.832278 B =10371.668407 C =11243.982448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.170 3.830 3 C -0.148 4.148 4 N -0.729 5.729 5 C 0.208 3.792 6 C -0.212 4.212 7 C -0.092 4.092 8 C -0.185 4.185 9 C -0.082 4.082 10 C -0.191 4.191 11 C 0.506 3.494 12 O -0.583 6.583 13 N -0.705 5.705 14 C 0.137 3.863 15 C -0.075 4.075 16 C -0.111 4.111 17 C 0.141 3.859 18 N -0.611 5.611 19 C -0.265 4.265 20 H 0.065 0.935 21 C -0.050 4.050 22 N -0.934 5.934 23 Si 0.966 3.034 24 H -0.283 1.283 25 H -0.293 1.293 26 H -0.271 1.271 27 C 0.181 3.819 28 C -0.122 4.122 29 H 0.069 0.931 30 H 0.086 0.914 31 H 0.051 0.949 32 H 0.102 0.898 33 H 0.074 0.926 34 H 0.076 0.924 35 H 0.417 0.583 36 H 0.110 0.890 37 H 0.118 0.882 38 H 0.128 0.872 39 H 0.141 0.859 40 H 0.143 0.857 41 H 0.409 0.591 42 H 0.054 0.946 43 H 0.058 0.942 44 H 0.068 0.932 45 H 0.052 0.948 46 H 0.081 0.919 47 H 0.015 0.985 48 H 0.053 0.947 49 H 0.250 0.750 50 H -0.004 1.004 51 H 0.049 0.951 52 H 0.065 0.935 53 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.975 10.318 14.466 25.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.080 3.920 3 C -0.206 4.206 4 N -0.364 5.364 5 C 0.106 3.894 6 C -0.234 4.234 7 C -0.110 4.110 8 C -0.205 4.205 9 C -0.100 4.100 10 C -0.213 4.213 11 C 0.292 3.708 12 O -0.463 6.463 13 N -0.355 5.355 14 C 0.013 3.987 15 C -0.094 4.094 16 C -0.149 4.149 17 C 0.016 3.984 18 N -0.335 5.335 19 C -0.395 4.395 20 H 0.083 0.917 21 C -0.245 4.245 22 N -0.580 5.580 23 Si 0.793 3.207 24 H -0.210 1.210 25 H -0.219 1.219 26 H -0.196 1.196 27 C 0.055 3.945 28 C -0.161 4.161 29 H 0.088 0.912 30 H 0.104 0.896 31 H 0.070 0.930 32 H 0.121 0.879 33 H 0.093 0.907 34 H 0.095 0.905 35 H 0.256 0.744 36 H 0.128 0.872 37 H 0.136 0.864 38 H 0.146 0.854 39 H 0.158 0.842 40 H 0.161 0.839 41 H 0.246 0.754 42 H 0.073 0.927 43 H 0.076 0.924 44 H 0.086 0.914 45 H 0.071 0.929 46 H 0.100 0.900 47 H 0.033 0.967 48 H 0.072 0.928 49 H 0.059 0.941 50 H 0.014 0.986 51 H 0.068 0.932 52 H 0.083 0.917 53 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -19.438 10.219 13.538 25.798 hybrid contribution 1.318 -0.495 -0.538 1.507 sum -18.120 9.724 13.000 24.329 Atomic orbital electron populations 1.22165 0.92400 1.02914 1.03464 1.20414 0.95627 0.93928 0.82074 1.22021 1.02499 0.90723 1.05309 1.44658 1.60474 1.07123 1.24118 1.17806 0.93674 0.84534 0.93376 1.20955 1.07133 0.95666 0.99651 1.21072 0.98212 0.94162 0.97582 1.21155 1.03758 1.00827 0.94751 1.21211 0.95886 0.93800 0.99133 1.20858 1.07434 0.96030 0.96993 1.21467 0.81016 0.78183 0.90092 1.90704 1.57476 1.61341 1.36794 1.45914 1.17608 1.55211 1.16793 1.21232 0.94019 0.95847 0.87571 1.21092 0.92650 0.96997 0.98630 1.21893 0.94979 0.96660 1.01418 1.21055 0.94964 0.92701 0.89692 1.44298 1.18872 1.32403 1.37881 1.19495 0.98805 0.92330 1.28868 0.91737 1.25826 1.00506 0.95316 1.02878 1.70180 1.45133 0.98003 1.44716 0.85310 0.79239 0.77034 0.79070 1.20998 1.21927 1.19595 1.20504 0.87504 0.88807 0.97661 1.21979 0.97537 0.99157 0.97473 0.91191 0.89563 0.92999 0.87943 0.90698 0.90490 0.74430 0.87197 0.86410 0.85386 0.84154 0.83877 0.75432 0.92721 0.92386 0.91381 0.92909 0.90034 0.96747 0.92838 0.94135 0.98613 0.93217 0.91667 0.92969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.57 7.78 71.98 0.56 -2.01 16 2 C 0.17 2.74 0.99 2.86 0.00 2.74 16 3 C -0.15 -1.57 8.57 71.98 0.62 -0.95 16 4 N -0.73 -9.70 4.52 -302.81 -1.37 -11.07 16 5 C 0.21 3.83 6.04 38.21 0.23 4.07 16 6 C -0.21 -4.90 7.33 22.40 0.16 -4.73 16 7 C -0.09 -2.07 10.04 22.25 0.22 -1.85 16 8 C -0.19 -3.68 10.04 22.29 0.22 -3.45 16 9 C -0.08 -1.42 10.04 22.25 0.22 -1.20 16 10 C -0.19 -3.14 9.90 22.40 0.22 -2.92 16 11 C 0.51 12.19 3.90 87.66 0.34 12.54 16 12 O -0.58 -18.73 15.81 -3.04 -0.05 -18.78 16 13 N -0.70 -16.33 4.78 -463.06 -2.22 -18.55 16 14 C 0.14 3.84 5.06 86.38 0.44 4.27 16 15 C -0.07 -2.31 2.19 -10.76 -0.02 -2.34 16 16 C -0.11 -3.43 5.25 30.67 0.16 -3.26 16 17 C 0.14 5.64 6.52 86.36 0.56 6.21 16 18 N -0.61 -30.63 2.99 -699.08 -2.09 -32.72 16 19 C -0.26 -14.64 9.57 84.03 0.80 -13.84 16 20 H 0.06 3.47 7.88 -2.91 -0.02 3.45 16 21 C -0.05 -2.80 4.93 84.86 0.42 -2.38 16 22 N -0.93 -55.73 11.24 21.65 0.24 -55.48 16 23 Si 0.97 45.11 29.58 68.60 2.03 47.14 16 24 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 25 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 26 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 27 C 0.18 8.79 5.28 86.36 0.46 9.24 16 28 C -0.12 -4.58 5.36 30.67 0.16 -4.41 16 29 H 0.07 1.25 8.06 -2.39 -0.02 1.23 16 30 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.05 1.10 5.43 -2.38 -0.01 1.08 16 32 H 0.10 0.57 8.14 -2.38 -0.02 0.55 16 33 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 34 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.42 3.32 8.49 -92.71 -0.79 2.53 16 36 H 0.11 2.93 3.74 -2.91 -0.01 2.92 16 37 H 0.12 2.50 8.06 -2.91 -0.02 2.47 16 38 H 0.13 2.12 8.06 -2.91 -0.02 2.10 16 39 H 0.14 1.78 8.06 -2.91 -0.02 1.75 16 40 H 0.14 1.61 8.06 -2.91 -0.02 1.58 16 41 H 0.41 8.16 6.99 -92.71 -0.65 7.51 16 42 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 43 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 44 H 0.07 2.15 8.14 -2.39 -0.02 2.14 16 45 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 46 H 0.08 1.95 7.15 -2.39 -0.02 1.93 16 47 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 48 H 0.05 2.10 7.93 -2.39 -0.02 2.08 16 49 H 0.25 14.42 8.31 -92.70 -0.77 13.65 16 50 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 51 H 0.05 2.75 6.14 -2.39 -0.01 2.74 16 52 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 53 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 Total: -1.00 -70.26 409.10 1.82 -68.44 By element: Atomic # 1 Polarization: 25.83 SS G_CDS: -0.53 Total: 25.30 kcal Atomic # 6 Polarization: -10.07 SS G_CDS: 5.79 Total: -4.28 kcal Atomic # 7 Polarization: -112.40 SS G_CDS: -5.43 Total: -117.82 kcal Atomic # 8 Polarization: -18.73 SS G_CDS: -0.05 Total: -18.78 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.14 kcal Total: -70.26 1.82 -68.44 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000906799729.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.742 kcal (2) G-P(sol) polarization free energy of solvation -70.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds