Wall clock time and date at job start Wed Apr 1 2020 04:34:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53003 * 109.46653 * 2 1 4 4 N 1.46499 * 109.46503 * 180.02562 * 3 2 1 5 5 C 1.46502 * 119.99751 * 269.99701 * 4 3 2 6 6 C 1.39047 * 120.00422 * 90.00430 * 4 3 2 7 7 C 1.39220 * 119.93109 * 179.97438 * 6 4 3 8 8 C 1.37610 * 120.06460 * 179.97438 * 7 6 4 9 9 C 1.39794 * 119.93598 * 359.97285 * 8 7 6 10 10 C 1.47521 * 120.07294 * 180.02562 * 9 8 7 11 11 O 1.21591 * 119.99441 * 7.98201 * 10 9 8 12 12 N 1.34777 * 120.00015 * 187.97709 * 10 9 8 13 13 C 1.47462 * 125.62550 * 174.68260 * 12 10 9 14 14 C 1.54912 * 104.80954 * 204.14612 * 13 12 10 15 15 H 1.09002 * 111.00296 * 81.13873 * 14 13 12 16 16 C 1.53008 * 111.00178 * 204.95128 * 14 13 12 17 17 C 1.55153 * 101.61889 * 323.04280 * 14 13 12 18 18 H 1.09000 * 110.72390 * 277.12381 * 17 14 13 19 19 N 1.46495 * 110.71948 * 153.84478 * 17 14 13 20 20 C 1.36945 * 119.99653 * 155.00557 * 19 17 14 21 21 H 1.07994 * 119.99928 * 359.97438 * 20 19 17 22 22 C 1.38817 * 119.99603 * 180.02562 * 20 19 17 23 23 N 1.31614 * 119.99927 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 119.99736 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.47426 * 89.99794 * 24 22 20 26 26 H 1.48499 * 109.47232 * 209.99977 * 24 22 20 27 27 H 1.48500 * 109.47299 * 329.99838 * 24 22 20 28 28 C 1.47017 * 125.65044 * 354.77266 * 12 10 9 29 29 C 1.39798 * 119.85806 * 0.27758 * 9 8 7 30 30 C 1.37614 * 119.93256 * 359.47076 * 29 9 8 31 31 H 1.09001 * 109.47380 * 60.00323 * 1 2 3 32 32 H 1.08999 * 109.46804 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.47362 * 299.99947 * 1 2 3 34 34 H 1.09004 * 109.46750 * 240.00261 * 2 1 3 35 35 H 1.08990 * 109.47102 * 120.00083 * 2 1 3 36 36 H 1.08997 * 109.47194 * 59.99950 * 3 2 1 37 37 H 1.09001 * 109.46964 * 299.99931 * 3 2 1 38 38 H 1.09002 * 109.47113 * 270.00492 * 5 4 3 39 39 H 1.09000 * 109.47397 * 30.00530 * 5 4 3 40 40 H 1.09003 * 109.47100 * 150.00498 * 5 4 3 41 41 H 1.07997 * 119.96706 * 359.97322 * 7 6 4 42 42 H 1.07998 * 120.03468 * 179.97438 * 8 7 6 43 43 H 1.08999 * 110.34859 * 85.32994 * 13 12 10 44 44 H 1.09004 * 110.40725 * 322.99308 * 13 12 10 45 45 H 1.09001 * 109.46735 * 175.42324 * 16 14 13 46 46 H 1.09002 * 109.46868 * 295.41348 * 16 14 13 47 47 H 1.08996 * 109.46927 * 55.42268 * 16 14 13 48 48 H 0.96996 * 120.00409 * 335.00333 * 19 17 14 49 49 H 0.97010 * 119.99745 * 180.02562 * 23 22 20 50 50 H 1.09004 * 109.88177 * 59.48054 * 28 12 10 51 51 H 1.09001 * 110.01258 * 298.39081 * 28 12 10 52 52 H 1.07997 * 120.03310 * 179.71909 * 29 9 8 53 53 H 1.07999 * 119.96440 * 180.25346 * 30 29 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5049 1.4425 -0.0006 5 6 4.2379 1.4424 1.2678 6 6 4.1998 1.4428 -1.2050 7 6 5.5920 1.4433 -1.2039 8 6 6.2824 1.4430 -2.3942 9 6 5.5844 1.4416 -3.6055 10 6 6.3215 1.4408 -4.8833 11 8 7.5287 1.2950 -4.8887 12 7 5.6569 1.6014 -6.0448 13 6 6.2750 1.7309 -7.3773 14 6 5.2255 2.4882 -8.2287 15 1 5.2741 3.5615 -8.0447 16 6 5.4022 2.1814 -9.7173 17 6 3.8979 1.8914 -7.6917 18 1 3.6766 0.9420 -8.1794 19 7 2.7942 2.8377 -7.8713 20 6 1.5067 2.3793 -7.9590 21 1 1.3052 1.3202 -7.8962 22 6 0.4608 3.2761 -8.1297 23 7 0.7066 4.5667 -8.2067 24 14 -1.2952 2.6508 -8.2501 25 1 -1.8945 2.5934 -6.8925 26 1 -2.0904 3.5695 -9.1037 27 1 -1.2970 1.2922 -8.8497 28 6 4.1962 1.6785 -6.1926 29 6 4.1865 1.4464 -3.6032 30 6 3.5017 1.4415 -2.4096 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3634 0.5138 0.8899 34 1 1.8933 -0.5138 -0.8901 35 1 1.8934 -0.5138 0.8899 36 1 1.6766 1.9564 0.8899 37 1 1.6766 1.9563 -0.8900 38 1 4.4197 2.4700 1.5826 39 1 3.6492 0.9284 2.0277 40 1 5.1903 0.9286 1.1371 41 1 6.1306 1.4439 -0.2678 42 1 7.3623 1.4438 -2.3927 43 1 6.4691 0.7461 -7.8024 44 1 7.1986 2.3063 -7.3136 45 1 4.6039 2.6604 -10.2842 46 1 6.3663 2.5620 -10.0547 47 1 5.3623 1.1033 -9.8732 48 1 2.9752 3.7890 -7.9280 49 1 -0.0243 5.1934 -8.3256 50 1 3.8089 2.5177 -5.6147 51 1 3.7373 0.7505 -5.8514 52 1 3.6445 1.4500 -4.5373 53 1 2.4217 1.4410 -2.4073 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000939864482.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:34:05 Heat of formation + Delta-G solvation = 13.824907 kcal Electronic energy + Delta-G solvation = -30785.323418 eV Core-core repulsion = 26850.220704 eV Total energy + Delta-G solvation = -3935.102714 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.60903 -40.33251 -38.91795 -37.49290 -35.85643 -34.56283 -33.90134 -32.60742 -31.98899 -30.97716 -29.30409 -28.40860 -27.58868 -26.21287 -25.67483 -23.69803 -23.44852 -22.49318 -21.62880 -21.37153 -20.80942 -19.07575 -18.44225 -18.08748 -17.40632 -17.00861 -16.59956 -16.34073 -15.91899 -15.74284 -15.55388 -15.36456 -15.28057 -14.92304 -14.71491 -14.59798 -14.35062 -14.05626 -13.94017 -13.85162 -13.59954 -13.33988 -13.12509 -13.06909 -12.97847 -12.85176 -12.82249 -12.81235 -12.59703 -12.24259 -12.15165 -12.03522 -12.01427 -11.70244 -11.64335 -11.47133 -11.42733 -11.03716 -10.81418 -10.76260 -9.98951 -9.66010 -9.01812 -8.29119 -7.90974 -5.20717 0.07332 0.48283 1.52183 1.52915 1.60951 1.88590 2.01327 2.12036 2.59524 2.95753 3.39144 3.45365 3.74477 3.82938 3.85487 3.88886 3.94386 4.03221 4.07164 4.23434 4.27200 4.32264 4.38348 4.41760 4.44728 4.48022 4.57515 4.61056 4.64157 4.68403 4.70866 4.73047 4.84698 4.89320 4.89978 4.93045 5.06254 5.11458 5.12013 5.16140 5.17527 5.22924 5.24273 5.33756 5.37508 5.42141 5.48929 5.56770 5.58666 5.77075 6.27448 6.28981 6.44056 6.51292 7.14479 7.37303 8.07987 8.32872 9.31872 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.007419 B = 0.003733 C = 0.002599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3773.070730 B = 7497.982375 C =10769.814798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.136 4.136 3 C 0.114 3.886 4 N -0.624 5.624 5 C 0.083 3.917 6 C 0.243 3.757 7 C -0.211 4.211 8 C -0.018 4.018 9 C -0.221 4.221 10 C 0.572 3.428 11 O -0.591 6.591 12 N -0.611 5.611 13 C 0.117 3.883 14 C -0.105 4.105 15 H 0.070 0.930 16 C -0.126 4.126 17 C 0.170 3.830 18 H 0.075 0.925 19 N -0.719 5.719 20 C -0.240 4.240 21 H 0.082 0.918 22 C -0.066 4.066 23 N -0.966 5.966 24 Si 0.965 3.035 25 H -0.288 1.288 26 H -0.301 1.301 27 H -0.269 1.269 28 C 0.079 3.921 29 C -0.074 4.074 30 C -0.216 4.216 31 H 0.050 0.950 32 H 0.059 0.941 33 H 0.067 0.933 34 H 0.048 0.952 35 H 0.070 0.930 36 H 0.096 0.904 37 H 0.069 0.931 38 H 0.058 0.942 39 H 0.086 0.914 40 H 0.076 0.924 41 H 0.153 0.847 42 H 0.130 0.870 43 H 0.081 0.919 44 H 0.073 0.927 45 H 0.048 0.952 46 H 0.071 0.929 47 H 0.066 0.934 48 H 0.375 0.625 49 H 0.250 0.750 50 H 0.067 0.933 51 H 0.077 0.923 52 H 0.158 0.842 53 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.503 -8.539 17.572 20.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.175 4.175 3 C -0.009 4.009 4 N -0.331 5.331 5 C -0.059 4.059 6 C 0.137 3.863 7 C -0.233 4.233 8 C -0.037 4.037 9 C -0.226 4.226 10 C 0.365 3.635 11 O -0.474 6.474 12 N -0.342 5.342 13 C -0.005 4.005 14 C -0.125 4.125 15 H 0.089 0.911 16 C -0.184 4.184 17 C 0.059 3.941 18 H 0.093 0.907 19 N -0.358 5.358 20 C -0.372 4.372 21 H 0.099 0.901 22 C -0.259 4.259 23 N -0.617 5.617 24 Si 0.795 3.205 25 H -0.215 1.215 26 H -0.228 1.228 27 H -0.193 1.193 28 C -0.046 4.046 29 C -0.092 4.092 30 C -0.239 4.239 31 H 0.069 0.931 32 H 0.078 0.922 33 H 0.086 0.914 34 H 0.067 0.933 35 H 0.088 0.912 36 H 0.114 0.886 37 H 0.088 0.912 38 H 0.076 0.924 39 H 0.105 0.895 40 H 0.094 0.906 41 H 0.170 0.830 42 H 0.148 0.852 43 H 0.099 0.901 44 H 0.091 0.909 45 H 0.067 0.933 46 H 0.090 0.910 47 H 0.085 0.915 48 H 0.208 0.792 49 H 0.059 0.941 50 H 0.085 0.915 51 H 0.095 0.905 52 H 0.175 0.825 53 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 5.883 -8.735 17.810 20.691 hybrid contribution -1.027 0.438 -0.259 1.146 sum 4.857 -8.297 17.550 20.011 Atomic orbital electron populations 1.21704 0.94448 1.02323 1.02327 1.21888 0.96619 0.96882 1.02120 1.21710 0.78335 0.97190 1.03634 1.46688 1.05631 1.77516 1.03279 1.21900 0.97703 1.02224 0.84072 1.18170 0.91523 0.90110 0.86474 1.20784 0.91936 1.11871 0.98730 1.21027 1.00069 0.92052 0.90588 1.19550 0.93986 1.16325 0.92720 1.18270 0.86179 0.75531 0.83517 1.90675 1.15356 1.53653 1.87728 1.48379 1.08126 1.71092 1.06652 1.22328 0.96314 1.00744 0.81161 1.22561 0.93935 0.99532 0.96453 0.91137 1.21553 1.01930 1.02168 0.92736 1.21494 0.87380 0.93983 0.91198 0.90712 1.42460 1.01938 1.05167 1.86215 1.19632 0.84314 0.92807 1.40411 0.90057 1.25456 1.01532 0.95467 1.03454 1.69813 1.31688 1.01665 1.58499 0.85261 0.80646 0.77399 0.77181 1.21467 1.22781 1.19332 1.23429 0.79165 1.00920 1.01135 1.22661 0.93487 0.92345 1.00718 1.20812 1.00349 1.11798 0.90901 0.93066 0.92211 0.91403 0.93280 0.91156 0.88621 0.91237 0.92384 0.89525 0.90562 0.82987 0.85185 0.90080 0.90864 0.93285 0.90992 0.91499 0.79230 0.94124 0.91452 0.90498 0.82511 0.84901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.98 9.91 71.98 0.71 -1.26 16 2 C -0.14 -1.99 6.26 30.60 0.19 -1.80 16 3 C 0.11 1.74 5.14 86.38 0.44 2.18 16 4 N -0.62 -10.92 2.99 -722.20 -2.16 -13.08 16 5 C 0.08 0.93 10.17 127.77 1.30 2.23 16 6 C 0.24 5.73 6.55 38.47 0.25 5.98 16 7 C -0.21 -4.90 9.18 22.36 0.21 -4.70 16 8 C -0.02 -0.50 9.58 22.50 0.22 -0.29 16 9 C -0.22 -7.25 5.87 -20.08 -0.12 -7.36 16 10 C 0.57 21.01 7.80 86.69 0.68 21.68 16 11 O -0.59 -24.36 16.66 -4.00 -0.07 -24.42 16 12 N -0.61 -20.84 3.33 -829.65 -2.76 -23.60 16 13 C 0.12 3.55 6.36 86.85 0.55 4.10 16 14 C -0.10 -3.29 3.27 -9.40 -0.03 -3.32 16 15 H 0.07 2.41 8.01 -2.39 -0.02 2.39 16 16 C -0.13 -3.42 9.29 71.98 0.67 -2.75 16 17 C 0.17 6.19 3.08 46.18 0.14 6.33 16 18 H 0.07 2.67 7.99 -2.39 -0.02 2.65 16 19 N -0.72 -33.26 5.15 -317.34 -1.63 -34.89 16 20 C -0.24 -12.24 9.96 84.03 0.84 -11.40 16 21 H 0.08 3.93 7.83 -2.91 -0.02 3.91 16 22 C -0.07 -3.58 5.50 84.86 0.47 -3.12 16 23 N -0.97 -56.46 13.06 21.65 0.28 -56.18 16 24 Si 0.97 43.70 29.55 68.60 2.03 45.73 16 25 H -0.29 -12.80 7.11 99.48 0.71 -12.10 16 26 H -0.30 -13.98 7.11 99.48 0.71 -13.28 16 27 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 28 C 0.08 2.71 4.62 86.73 0.40 3.12 16 29 C -0.07 -2.28 8.58 22.50 0.19 -2.09 16 30 C -0.22 -5.86 9.18 22.36 0.21 -5.66 16 31 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.10 1.08 8.07 -2.39 -0.02 1.06 16 37 H 0.07 1.25 6.17 -2.39 -0.01 1.24 16 38 H 0.06 0.59 8.14 -2.39 -0.02 0.58 16 39 H 0.09 0.65 8.07 -2.39 -0.02 0.63 16 40 H 0.08 0.79 6.17 -2.39 -0.01 0.77 16 41 H 0.15 2.60 6.11 -2.91 -0.02 2.58 16 42 H 0.13 3.63 7.66 -2.91 -0.02 3.61 16 43 H 0.08 2.22 8.03 -2.39 -0.02 2.21 16 44 H 0.07 2.23 8.09 -2.39 -0.02 2.21 16 45 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 46 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 47 H 0.07 1.63 8.13 -2.39 -0.02 1.61 16 48 H 0.38 19.08 7.76 -92.71 -0.72 18.36 16 49 H 0.25 14.31 8.31 -92.70 -0.77 13.54 16 50 H 0.07 2.57 6.53 -2.38 -0.02 2.55 16 51 H 0.08 2.50 6.81 -2.39 -0.02 2.49 16 52 H 0.16 5.06 2.75 -8.37 -0.02 5.04 16 53 H 0.13 3.34 6.11 -2.91 -0.02 3.32 16 Total: -1.00 -66.08 416.11 3.18 -62.90 By element: Atomic # 1 Polarization: 41.50 SS G_CDS: 0.18 Total: 41.67 kcal Atomic # 6 Polarization: -5.45 SS G_CDS: 7.32 Total: 1.87 kcal Atomic # 7 Polarization: -121.48 SS G_CDS: -6.27 Total: -127.75 kcal Atomic # 8 Polarization: -24.36 SS G_CDS: -0.07 Total: -24.42 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.73 kcal Total: -66.08 3.18 -62.90 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000939864482.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.725 kcal (2) G-P(sol) polarization free energy of solvation -66.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.900 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds