Wall clock time and date at job start Wed Apr 1 2020 04:35:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53003 * 109.46745 * 2 1 4 4 N 1.46504 * 109.46659 * 180.02562 * 3 2 1 5 5 C 1.46500 * 120.00269 * 269.99925 * 4 3 2 6 6 C 1.39051 * 119.99852 * 90.00125 * 4 3 2 7 7 C 1.39217 * 119.92887 * 180.02562 * 6 4 3 8 8 C 1.37612 * 120.06450 * 180.02562 * 7 6 4 9 9 C 1.39787 * 119.93274 * 359.97438 * 8 7 6 10 10 C 1.47524 * 120.06816 * 179.97438 * 9 8 7 11 11 O 1.21593 * 120.00242 * 228.37191 * 10 9 8 12 12 N 1.34781 * 119.99970 * 48.36935 * 10 9 8 13 13 C 1.46493 * 119.99964 * 5.13673 * 12 10 9 14 14 C 1.53000 * 109.47183 * 256.34168 * 13 12 10 15 15 C 1.46501 * 119.99768 * 185.13345 * 12 10 9 16 16 C 1.53496 * 114.20697 * 300.00220 * 15 12 10 17 17 N 1.47056 * 87.98760 * 87.71821 * 16 15 12 18 18 C 1.36943 * 136.06259 * 207.08479 * 17 16 15 19 19 H 1.07996 * 119.99190 * 3.40477 * 18 17 16 20 20 C 1.38800 * 120.00371 * 183.40632 * 18 17 16 21 21 N 1.31622 * 120.00135 * 171.07698 * 20 18 17 22 22 Si 1.86808 * 120.00026 * 351.07179 * 20 18 17 23 23 H 1.48504 * 109.46820 * 182.36919 * 22 20 18 24 24 H 1.48498 * 109.46886 * 302.36790 * 22 20 18 25 25 H 1.48499 * 109.47297 * 62.37022 * 22 20 18 26 26 C 1.47067 * 87.88386 * 27.34032 * 17 16 15 27 27 C 1.39796 * 119.86314 * 0.24862 * 9 8 7 28 28 C 1.37606 * 119.92847 * 359.49504 * 27 9 8 29 29 H 1.08998 * 109.46920 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47010 * 299.99867 * 1 2 3 31 31 H 1.09001 * 109.47086 * 59.99936 * 1 2 3 32 32 H 1.08994 * 109.47051 * 240.00099 * 2 1 3 33 33 H 1.09001 * 109.47086 * 120.00064 * 2 1 3 34 34 H 1.08994 * 109.47265 * 60.00231 * 3 2 1 35 35 H 1.09001 * 109.47380 * 299.99883 * 3 2 1 36 36 H 1.09000 * 109.46710 * 270.00255 * 5 4 3 37 37 H 1.09002 * 109.46461 * 30.00106 * 5 4 3 38 38 H 1.08998 * 109.47310 * 150.00057 * 5 4 3 39 39 H 1.07997 * 119.96856 * 359.97438 * 7 6 4 40 40 H 1.07999 * 120.02922 * 179.97438 * 8 7 6 41 41 H 1.09000 * 109.47171 * 16.34378 * 13 12 10 42 42 H 1.09000 * 109.47313 * 136.33930 * 13 12 10 43 43 H 1.09002 * 109.47329 * 167.01174 * 14 13 12 44 44 H 1.08998 * 109.47047 * 287.01082 * 14 13 12 45 45 H 1.09005 * 109.46859 * 47.01492 * 14 13 12 46 46 H 1.09004 * 113.27818 * 166.93624 * 15 12 10 47 47 H 1.09005 * 113.46584 * 332.93487 * 16 15 12 48 48 H 1.09000 * 113.51787 * 202.51310 * 16 15 12 49 49 H 0.96994 * 120.00252 * 5.08895 * 21 20 18 50 50 H 1.09002 * 113.46528 * 87.43823 * 26 17 16 51 51 H 1.09005 * 113.46803 * 217.87689 * 26 17 16 52 52 H 1.08003 * 120.03424 * 179.74679 * 27 9 8 53 53 H 1.08007 * 119.96394 * 180.25013 * 28 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.2381 1.4424 1.2678 6 6 4.1997 1.4427 -1.2051 7 6 5.5919 1.4422 -1.2040 8 6 6.2823 1.4429 -2.3945 9 6 5.5842 1.4437 -3.6056 10 6 6.3213 1.4450 -4.8835 11 8 6.0188 2.2327 -5.7590 12 7 7.3300 0.5731 -5.0806 13 6 7.6217 -0.4494 -4.0730 14 6 8.8638 -0.0423 -3.2779 15 6 8.1347 0.6480 -6.3026 16 6 7.3315 0.4622 -7.5974 17 7 7.0776 1.9107 -7.5864 18 6 6.1000 2.7440 -8.0608 19 1 5.2275 2.3317 -8.5456 20 6 6.2304 4.1186 -7.9186 21 7 5.3856 4.9260 -8.5243 22 14 7.6049 4.8226 -6.8675 23 1 7.4920 6.3029 -6.8316 24 1 7.4980 4.2843 -5.4876 25 1 8.9173 4.4402 -7.4477 26 6 8.3389 2.0711 -6.8474 27 6 4.1863 1.4489 -3.6033 28 6 3.5017 1.4429 -2.4096 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 1.6767 1.9563 0.8899 35 1 1.6766 1.9564 -0.8900 36 1 4.4199 2.4700 1.5824 37 1 3.6493 0.9284 2.0275 38 1 5.1905 0.9285 1.1370 39 1 6.1306 1.4420 -0.2680 40 1 7.3622 1.4429 -2.3930 41 1 6.7725 -0.5455 -3.3963 42 1 7.8029 -1.4044 -4.5662 43 1 8.9492 -0.6697 -2.3906 44 1 9.7505 -0.1689 -3.8991 45 1 8.7767 1.0019 -2.9774 46 1 9.0479 0.0548 -6.2540 47 1 6.4306 -0.1374 -7.4671 48 1 7.9376 0.1340 -8.4418 49 1 4.6289 4.5612 -9.0091 50 1 9.2114 2.1673 -7.4937 51 1 8.2964 2.8423 -6.0783 52 1 3.6442 1.4537 -4.5374 53 1 2.4216 1.4428 -2.4072 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000957461197.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:35:10 Heat of formation + Delta-G solvation = 91.707104 kcal Electronic energy + Delta-G solvation = -32018.478735 eV Core-core repulsion = 28086.753247 eV Total energy + Delta-G solvation = -3931.725489 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -41.77449 -40.55357 -38.65902 -37.21758 -36.49540 -34.37499 -34.23011 -32.08452 -31.14234 -30.90979 -29.33450 -28.40812 -26.92646 -26.38299 -24.74449 -23.97093 -23.48258 -22.93900 -22.06016 -21.34389 -19.84199 -19.22023 -18.55601 -17.88592 -17.35961 -16.94461 -16.32659 -16.22490 -16.01585 -15.85212 -15.63632 -15.58734 -15.24629 -15.07674 -14.87839 -14.66708 -14.32524 -14.13095 -13.88541 -13.55315 -13.47937 -13.34684 -13.06305 -12.98923 -12.97709 -12.83883 -12.66587 -12.57165 -12.41371 -12.36670 -12.23699 -12.06513 -11.90643 -11.66115 -11.51173 -11.22162 -10.93086 -10.82536 -10.72572 -10.14604 -9.92639 -9.34765 -8.67624 -8.41608 -8.18942 -5.11249 0.32349 0.48795 1.32541 1.53895 1.67660 2.12359 2.16109 2.23109 2.68077 2.92948 3.20301 3.45071 3.64708 3.80173 3.84124 3.91067 4.03220 4.07676 4.18323 4.28767 4.36569 4.37924 4.44812 4.46499 4.52481 4.55595 4.57804 4.66983 4.68413 4.70000 4.71484 4.74418 4.75948 4.83621 4.93219 4.94883 4.98590 5.05457 5.10162 5.16560 5.18241 5.20430 5.25453 5.34678 5.38399 5.41831 5.49191 5.63464 5.79367 6.01682 6.15335 6.32830 6.49860 6.73132 6.91673 7.60128 7.74813 8.53123 9.17494 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.012743 B = 0.003429 C = 0.003105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2196.773518 B = 8164.378017 C = 9015.440762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.136 4.136 3 C 0.115 3.885 4 N -0.627 5.627 5 C 0.085 3.915 6 C 0.233 3.767 7 C -0.200 4.200 8 C -0.045 4.045 9 C -0.199 4.199 10 C 0.510 3.490 11 O -0.492 6.492 12 N -0.597 5.597 13 C 0.103 3.897 14 C -0.168 4.168 15 C 0.133 3.867 16 C 0.103 3.897 17 N -0.630 5.630 18 C -0.201 4.201 19 H 0.027 0.973 20 C -0.095 4.095 21 N -1.000 6.000 22 Si 1.131 2.869 23 H -0.324 1.324 24 H -0.290 1.290 25 H -0.269 1.269 26 C 0.080 3.920 27 C -0.045 4.045 28 C -0.208 4.208 29 H 0.059 0.941 30 H 0.067 0.933 31 H 0.050 0.950 32 H 0.048 0.952 33 H 0.071 0.929 34 H 0.094 0.906 35 H 0.065 0.935 36 H 0.053 0.947 37 H 0.085 0.915 38 H 0.079 0.921 39 H 0.156 0.844 40 H 0.147 0.853 41 H 0.082 0.918 42 H 0.091 0.909 43 H 0.091 0.909 44 H 0.068 0.932 45 H 0.048 0.952 46 H 0.150 0.850 47 H 0.024 0.976 48 H 0.069 0.931 49 H 0.234 0.766 50 H 0.065 0.935 51 H 0.035 0.965 52 H 0.093 0.907 53 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.998 -17.265 27.461 32.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.175 4.175 3 C -0.007 4.007 4 N -0.336 5.336 5 C -0.057 4.057 6 C 0.128 3.872 7 C -0.222 4.222 8 C -0.064 4.064 9 C -0.205 4.205 10 C 0.297 3.703 11 O -0.364 6.364 12 N -0.332 5.332 13 C -0.018 4.018 14 C -0.225 4.225 15 C 0.027 3.973 16 C -0.024 4.024 17 N -0.358 5.358 18 C -0.329 4.329 19 H 0.045 0.955 20 C -0.283 4.283 21 N -0.651 5.651 22 Si 0.963 3.037 23 H -0.254 1.254 24 H -0.218 1.218 25 H -0.196 1.196 26 C -0.045 4.045 27 C -0.065 4.065 28 C -0.230 4.230 29 H 0.078 0.922 30 H 0.086 0.914 31 H 0.069 0.931 32 H 0.067 0.933 33 H 0.089 0.911 34 H 0.112 0.888 35 H 0.084 0.916 36 H 0.072 0.928 37 H 0.104 0.896 38 H 0.097 0.903 39 H 0.174 0.826 40 H 0.164 0.836 41 H 0.100 0.900 42 H 0.109 0.891 43 H 0.110 0.890 44 H 0.087 0.913 45 H 0.067 0.933 46 H 0.167 0.833 47 H 0.042 0.958 48 H 0.086 0.914 49 H 0.043 0.957 50 H 0.083 0.917 51 H 0.053 0.947 52 H 0.111 0.889 53 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 2.257 -15.333 27.608 31.661 hybrid contribution -1.729 -1.001 -1.470 2.480 sum 0.528 -16.334 26.138 30.826 Atomic orbital electron populations 1.21703 0.94458 1.02304 1.02278 1.21887 0.96593 0.96858 1.02120 1.21666 0.78607 0.97147 1.03320 1.46594 1.05451 1.78352 1.03155 1.21873 0.97807 1.02012 0.84000 1.18001 0.91663 0.91456 0.86075 1.20838 0.91775 1.10717 0.98900 1.21470 1.00779 0.93958 0.90146 1.19791 0.94072 1.12961 0.93631 1.19266 0.80934 0.82463 0.87635 1.91411 1.64660 1.38051 1.42252 1.47643 1.32329 1.33280 1.19926 1.21829 0.99310 0.90480 0.90231 1.22331 0.97551 1.01543 1.01121 1.22489 0.94431 0.96319 0.84017 1.23023 0.97112 0.85649 0.96608 1.45632 1.20182 1.03709 1.66265 1.19462 0.97389 0.88769 1.27309 0.95516 1.26496 1.06809 0.92369 1.02638 1.71053 1.17645 1.36268 1.40179 0.82915 0.73742 0.71873 0.75157 1.25372 1.21804 1.19561 1.23263 0.89600 0.97388 0.94270 1.20790 0.93066 0.95019 0.97587 1.20593 0.99985 1.11847 0.90574 0.92187 0.91446 0.93069 0.93350 0.91080 0.88798 0.91625 0.92810 0.89605 0.90253 0.82608 0.83572 0.89953 0.89102 0.89012 0.91294 0.93318 0.83262 0.95752 0.91363 0.95742 0.91733 0.94707 0.88887 0.85067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 9.91 71.98 0.71 -0.92 16 2 C -0.14 -1.75 6.26 30.60 0.19 -1.55 16 3 C 0.12 1.63 5.15 86.38 0.44 2.07 16 4 N -0.63 -10.39 2.99 -722.20 -2.16 -12.55 16 5 C 0.08 0.85 10.18 127.77 1.30 2.15 16 6 C 0.23 5.37 6.55 38.47 0.25 5.62 16 7 C -0.20 -4.33 9.18 22.36 0.21 -4.13 16 8 C -0.04 -1.19 7.67 22.50 0.17 -1.02 16 9 C -0.20 -7.07 4.73 -20.08 -0.09 -7.17 16 10 C 0.51 21.55 6.72 86.69 0.58 22.13 16 11 O -0.49 -27.25 8.89 -4.01 -0.04 -27.29 16 12 N -0.60 -19.46 2.78 -800.41 -2.22 -21.69 16 13 C 0.10 2.13 5.62 86.38 0.49 2.62 16 14 C -0.17 -2.55 9.36 71.98 0.67 -1.88 16 15 C 0.13 4.39 4.81 45.55 0.22 4.61 16 16 C 0.10 4.21 8.21 83.17 0.68 4.89 16 17 N -0.63 -33.80 2.07 -738.16 -1.53 -35.33 16 18 C -0.20 -13.26 8.87 84.03 0.75 -12.52 16 19 H 0.03 1.95 8.05 -2.91 -0.02 1.92 16 20 C -0.10 -6.53 5.31 84.86 0.45 -6.08 16 21 N -1.00 -73.53 13.70 21.65 0.30 -73.23 16 22 Si 1.13 64.89 23.97 68.60 1.64 66.53 16 23 H -0.32 -19.05 7.11 99.48 0.71 -18.35 16 24 H -0.29 -16.22 6.04 99.48 0.60 -15.62 16 25 H -0.27 -13.71 6.63 99.48 0.66 -13.06 16 26 C 0.08 3.53 4.94 83.25 0.41 3.94 16 27 C -0.04 -1.61 9.70 22.50 0.22 -1.39 16 28 C -0.21 -5.86 9.18 22.36 0.21 -5.65 16 29 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.09 0.96 8.07 -2.39 -0.02 0.94 16 35 H 0.07 1.11 6.17 -2.39 -0.01 1.09 16 36 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 37 H 0.09 0.53 8.07 -2.39 -0.02 0.51 16 38 H 0.08 0.66 6.17 -2.39 -0.01 0.65 16 39 H 0.16 2.29 6.11 -2.91 -0.02 2.27 16 40 H 0.15 3.35 4.42 -2.91 -0.01 3.33 16 41 H 0.08 1.76 5.59 -2.39 -0.01 1.75 16 42 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 43 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 44 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 45 H 0.05 0.90 5.90 -2.38 -0.01 0.89 16 46 H 0.15 3.26 8.10 -2.38 -0.02 3.24 16 47 H 0.02 1.05 8.14 -2.38 -0.02 1.03 16 48 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 49 H 0.23 17.31 8.73 -92.71 -0.81 16.50 16 50 H 0.07 2.60 8.05 -2.39 -0.02 2.58 16 51 H 0.04 1.69 3.67 -2.38 -0.01 1.68 16 52 H 0.09 3.82 8.06 -2.91 -0.02 3.80 16 53 H 0.13 3.32 6.11 -2.91 -0.02 3.30 16 Total: -1.00 -94.36 397.35 4.56 -89.80 By element: Atomic # 1 Polarization: 7.31 SS G_CDS: 0.71 Total: 8.02 kcal Atomic # 6 Polarization: -2.13 SS G_CDS: 7.86 Total: 5.73 kcal Atomic # 7 Polarization: -137.18 SS G_CDS: -5.61 Total: -142.79 kcal Atomic # 8 Polarization: -27.25 SS G_CDS: -0.04 Total: -27.29 kcal Atomic # 14 Polarization: 64.89 SS G_CDS: 1.64 Total: 66.53 kcal Total: -94.36 4.56 -89.80 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957461197.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 181.508 kcal (2) G-P(sol) polarization free energy of solvation -94.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.801 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds