Wall clock time and date at job start Wed Apr 1 2020 03:00:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53006 * 109.46887 * 2 1 4 4 C 1.53001 * 109.47104 * 119.99608 * 2 1 3 5 5 C 1.50704 * 109.47451 * 175.00088 * 4 2 1 6 6 C 1.35452 * 126.06459 * 90.02269 * 5 4 2 7 7 N 1.35535 * 108.86987 * 179.97438 * 6 5 4 8 8 H 0.97004 * 125.67555 * 179.97438 * 7 6 5 9 9 C 1.37643 * 108.64368 * 0.02562 * 7 6 5 10 10 C 1.46678 * 126.23436 * 180.02562 * 9 7 6 11 11 O 1.21697 * 120.00518 * 179.97438 * 10 9 7 12 12 N 1.34781 * 119.99776 * 359.97438 * 10 9 7 13 13 C 1.46498 * 119.99908 * 179.97438 * 12 10 9 14 14 C 1.53952 * 113.57839 * 252.71925 * 13 12 10 15 15 C 1.52915 * 86.78165 * 220.66352 * 14 13 12 16 16 C 1.52911 * 121.13481 * 150.61434 * 15 14 13 17 17 C 1.53955 * 86.77893 * 100.82131 * 16 15 14 18 18 N 1.46502 * 113.57343 * 139.33451 * 17 16 15 19 19 C 1.36941 * 119.99839 * 107.28399 * 18 17 16 20 20 H 1.08001 * 119.99959 * 0.02562 * 19 18 17 21 21 C 1.38814 * 120.00098 * 179.97438 * 19 18 17 22 22 N 1.31611 * 120.00071 * 180.02562 * 21 19 18 23 23 Si 1.86798 * 119.99793 * 359.97438 * 21 19 18 24 24 H 1.48498 * 109.47301 * 90.00195 * 23 21 19 25 25 H 1.48497 * 109.47173 * 209.99986 * 23 21 19 26 26 H 1.48499 * 109.47310 * 329.99915 * 23 21 19 27 27 C 1.52904 * 121.13857 * 259.17674 * 15 14 13 28 28 C 1.52909 * 88.04208 * 24.90077 * 15 14 13 29 29 C 1.37871 * 107.53796 * 0.02562 * 9 7 6 30 30 H 1.08997 * 109.47688 * 300.00565 * 1 2 3 31 31 H 1.09001 * 109.46777 * 60.00237 * 1 2 3 32 32 H 1.09003 * 109.46990 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47596 * 239.99913 * 2 1 3 34 34 H 1.09002 * 109.47146 * 179.97438 * 3 2 1 35 35 H 1.08991 * 109.47140 * 299.99658 * 3 2 1 36 36 H 1.08996 * 109.47194 * 60.00018 * 3 2 1 37 37 H 1.09001 * 109.46714 * 55.00150 * 4 2 1 38 38 H 1.09000 * 109.47059 * 295.00552 * 4 2 1 39 39 H 1.08006 * 125.56278 * 0.25135 * 6 5 4 40 40 H 0.96998 * 119.99678 * 359.97438 * 12 10 9 41 41 H 1.08998 * 112.82451 * 23.91407 * 13 12 10 42 42 H 1.08994 * 113.66202 * 335.13773 * 14 13 12 43 43 H 1.08998 * 113.65871 * 106.19528 * 14 13 12 44 44 H 1.08997 * 113.66326 * 215.29226 * 16 15 14 45 45 H 1.08996 * 113.66156 * 346.35706 * 16 15 14 46 46 H 1.08991 * 113.58468 * 270.12770 * 17 16 15 47 47 H 0.96996 * 120.00147 * 287.27859 * 18 17 16 48 48 H 0.97001 * 120.00095 * 180.02562 * 22 21 19 49 49 H 1.09005 * 113.66434 * 13.65347 * 27 15 14 50 50 H 1.09008 * 113.66096 * 144.61602 * 27 15 14 51 51 H 1.08997 * 113.65820 * 220.63046 * 28 15 14 52 52 H 1.09003 * 113.66234 * 89.57171 * 28 15 14 53 53 H 1.07994 * 126.46183 * 180.02562 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5419 -0.8293 1.1890 6 6 4.4266 0.0738 1.6753 7 7 5.6840 -0.3708 1.4344 8 1 6.5029 0.0873 1.6804 9 6 5.6057 -1.5801 0.7817 10 6 6.7375 -2.4010 0.3384 11 8 6.5368 -3.4575 -0.2313 12 7 7.9999 -1.9852 0.5620 13 6 9.1304 -2.8054 0.1198 14 6 9.8726 -3.5044 1.2733 15 6 11.1667 -3.1578 0.5362 16 6 12.4723 -2.9253 1.2975 17 6 12.8633 -4.3577 0.8907 18 7 14.2684 -4.4925 0.4986 19 6 15.1529 -5.1282 1.3286 20 1 14.8145 -5.5305 2.2720 21 6 16.4842 -5.2564 0.9569 22 7 17.3341 -5.8678 1.7543 23 14 17.0690 -4.5624 -0.6758 24 1 17.5153 -3.1589 -0.4858 25 1 18.2018 -5.3776 -1.1829 26 1 15.9547 -4.5989 -1.6568 27 6 11.9031 -4.2028 -0.3026 28 6 10.4188 -1.9984 -0.1232 29 6 4.2695 -1.8794 0.6204 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 3.1299 1.4426 0.0005 35 1 1.6766 1.9563 -0.8899 36 1 1.6766 1.9564 0.8899 37 1 1.6053 -1.7197 1.2952 38 1 1.7515 -0.1582 2.1370 39 1 4.1715 0.9954 2.1774 40 1 8.1599 -1.1430 1.0158 41 1 8.8724 -3.4729 -0.7024 42 1 9.7663 -2.9978 2.2325 43 1 9.6771 -4.5750 1.3340 44 1 13.1057 -2.1565 0.8551 45 1 12.3357 -2.7974 2.3713 46 1 12.5488 -5.1159 1.6078 47 1 14.5722 -4.1315 -0.3489 48 1 18.2645 -5.9571 1.4948 49 1 11.3119 -5.0954 -0.5071 50 1 12.3753 -3.7932 -1.1957 51 1 10.6597 -1.8661 -1.1780 52 1 10.4661 -1.0686 0.4436 53 1 3.8617 -2.7595 0.1458 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000965850679.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:00:58 Heat of formation + Delta-G solvation = 23.211481 kcal Electronic energy + Delta-G solvation = -29004.631416 eV Core-core repulsion = 25069.935734 eV Total energy + Delta-G solvation = -3934.695682 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -42.38035 -41.58012 -39.92380 -37.35959 -37.18970 -35.34105 -33.82784 -32.40253 -31.96567 -30.40588 -27.90626 -27.26979 -26.80478 -26.67242 -25.96394 -24.64052 -22.88262 -21.65342 -21.27217 -21.18225 -20.44609 -19.80853 -19.26531 -18.65537 -17.39248 -16.98287 -16.76531 -16.32515 -16.12400 -15.91058 -15.82696 -15.36409 -15.17106 -14.90484 -14.65770 -14.55494 -14.40846 -14.22310 -13.75042 -13.66555 -13.60686 -13.53797 -13.40992 -13.01643 -12.98952 -12.90569 -12.73032 -12.42742 -12.34812 -12.23306 -12.03351 -11.87473 -11.78197 -11.61180 -11.57813 -11.39978 -11.15185 -11.08974 -10.85937 -10.78498 -10.15620 -9.73301 -9.27108 -9.05159 -8.03055 -5.35887 0.45475 1.37223 1.40851 1.48323 1.76360 2.04533 2.25314 2.33717 2.48086 3.26985 3.43164 3.46012 3.62763 3.75449 3.85888 3.88370 4.04616 4.06837 4.13287 4.22955 4.27922 4.31155 4.39780 4.44450 4.56929 4.58997 4.75735 4.77790 4.81886 4.89316 4.91693 4.92358 4.95328 5.00434 5.05637 5.06021 5.09439 5.11509 5.16909 5.18519 5.23721 5.29179 5.39789 5.45100 5.52769 5.56388 5.60219 5.61796 5.77797 5.83705 5.96778 6.22409 6.45279 6.63007 7.07654 7.12401 7.85179 8.04680 9.18684 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.039659 B = 0.001484 C = 0.001482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.858182 B =18857.156724 C =18885.492931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.092 4.092 3 C -0.144 4.144 4 C -0.039 4.039 5 C -0.186 4.186 6 C 0.048 3.952 7 N -0.523 5.523 8 H 0.432 0.568 9 C -0.075 4.075 10 C 0.585 3.415 11 O -0.580 6.580 12 N -0.703 5.703 13 C 0.129 3.871 14 C -0.123 4.123 15 C -0.090 4.090 16 C -0.137 4.137 17 C 0.147 3.853 18 N -0.743 5.743 19 C -0.235 4.235 20 H 0.054 0.946 21 C -0.065 4.065 22 N -0.985 5.985 23 Si 0.957 3.043 24 H -0.276 1.276 25 H -0.297 1.297 26 H -0.252 1.252 27 C -0.124 4.124 28 C -0.113 4.113 29 C -0.122 4.122 30 H 0.063 0.937 31 H 0.053 0.947 32 H 0.051 0.949 33 H 0.051 0.949 34 H 0.054 0.946 35 H 0.047 0.953 36 H 0.065 0.935 37 H 0.061 0.939 38 H 0.084 0.916 39 H 0.206 0.794 40 H 0.411 0.589 41 H 0.097 0.903 42 H 0.099 0.901 43 H 0.060 0.940 44 H 0.078 0.922 45 H 0.060 0.940 46 H 0.065 0.935 47 H 0.367 0.633 48 H 0.257 0.743 49 H 0.067 0.933 50 H 0.086 0.914 51 H 0.081 0.919 52 H 0.109 0.891 53 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.580 21.299 -1.881 40.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.111 4.111 3 C -0.202 4.202 4 C -0.077 4.077 5 C -0.191 4.191 6 C -0.089 4.089 7 N -0.120 5.120 8 H 0.272 0.728 9 C -0.188 4.188 10 C 0.375 3.625 11 O -0.460 6.460 12 N -0.354 5.354 13 C 0.024 3.976 14 C -0.162 4.162 15 C -0.092 4.092 16 C -0.177 4.177 17 C 0.038 3.962 18 N -0.384 5.384 19 C -0.366 4.366 20 H 0.072 0.928 21 C -0.256 4.256 22 N -0.636 5.636 23 Si 0.784 3.216 24 H -0.202 1.202 25 H -0.224 1.224 26 H -0.177 1.177 27 C -0.162 4.162 28 C -0.151 4.151 29 C -0.149 4.149 30 H 0.082 0.918 31 H 0.072 0.928 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.073 0.927 35 H 0.066 0.934 36 H 0.084 0.916 37 H 0.080 0.920 38 H 0.102 0.898 39 H 0.223 0.777 40 H 0.248 0.752 41 H 0.115 0.885 42 H 0.117 0.883 43 H 0.079 0.921 44 H 0.097 0.903 45 H 0.079 0.921 46 H 0.083 0.917 47 H 0.200 0.800 48 H 0.066 0.934 49 H 0.085 0.915 50 H 0.104 0.896 51 H 0.099 0.901 52 H 0.127 0.873 53 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -34.431 20.464 -2.082 40.107 hybrid contribution 1.486 0.062 -0.471 1.560 sum -32.945 20.527 -2.553 38.901 Atomic orbital electron populations 1.21840 0.94745 1.01726 1.02099 1.21066 0.95620 0.96721 0.97648 1.21846 1.01167 0.95295 1.01850 1.20037 0.88600 1.00740 0.98302 1.19588 0.96433 0.96105 1.07020 1.22398 0.82012 1.01114 1.03392 1.41896 1.09433 1.16246 1.44436 0.72812 1.20085 0.94547 0.91832 1.12358 1.17426 0.82626 0.84456 0.78000 1.90827 1.85526 1.24935 1.44683 1.45733 1.04526 1.24997 1.60113 1.22432 0.83806 0.93950 0.97421 1.23195 0.93410 1.01059 0.98519 1.21875 0.92569 0.97033 0.97678 1.23405 0.95731 0.98992 0.99597 1.21902 0.82098 0.95825 0.96328 1.42753 1.05847 1.68674 1.21160 1.19120 0.90037 1.27697 0.99776 0.92758 1.25531 0.96206 1.01678 1.02232 1.69890 1.03916 1.50101 1.39663 0.85376 0.77928 0.77918 0.80354 1.20221 1.22371 1.17668 1.23132 0.97143 0.98400 0.97565 1.23144 0.92202 0.97585 1.02139 1.21313 0.91081 1.00144 1.02392 0.91812 0.92808 0.92960 0.93076 0.92687 0.93377 0.91598 0.91986 0.89781 0.77726 0.75240 0.88517 0.88286 0.92076 0.90340 0.92074 0.91704 0.79983 0.93380 0.91452 0.89551 0.90052 0.87252 0.85480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.19 71.98 0.66 -0.54 16 2 C -0.09 -0.91 2.91 -10.79 -0.03 -0.94 16 3 C -0.14 -1.12 8.91 71.98 0.64 -0.48 16 4 C -0.04 -0.39 5.18 29.85 0.15 -0.23 16 5 C -0.19 -2.42 4.82 -20.12 -0.10 -2.51 16 6 C 0.05 0.38 10.43 83.48 0.87 1.25 16 7 N -0.52 -4.67 5.99 -183.62 -1.10 -5.77 16 8 H 0.43 0.92 8.19 -92.71 -0.76 0.16 16 9 C -0.08 -1.35 7.06 40.35 0.28 -1.06 16 10 C 0.59 13.31 7.79 86.45 0.67 13.98 16 11 O -0.58 -18.76 16.48 -4.34 -0.07 -18.83 16 12 N -0.70 -11.45 5.35 -443.46 -2.37 -13.82 16 13 C 0.13 2.55 4.24 45.63 0.19 2.74 16 14 C -0.12 -2.67 7.64 30.89 0.24 -2.44 16 15 C -0.09 -2.13 1.11 -52.31 -0.06 -2.19 16 16 C -0.14 -4.08 7.64 30.89 0.24 -3.84 16 17 C 0.15 5.51 4.48 45.63 0.20 5.71 16 18 N -0.74 -34.74 5.20 -319.93 -1.67 -36.40 16 19 C -0.24 -13.57 10.45 84.03 0.88 -12.69 16 20 H 0.05 3.44 8.06 -2.91 -0.02 3.42 16 21 C -0.07 -3.88 5.50 84.86 0.47 -3.41 16 22 N -0.99 -63.77 13.97 21.65 0.30 -63.47 16 23 Si 0.96 45.60 27.73 68.60 1.90 47.51 16 24 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 25 H -0.30 -14.37 7.11 99.48 0.71 -13.67 16 26 H -0.25 -10.83 6.52 99.48 0.65 -10.18 16 27 C -0.12 -3.61 7.59 30.88 0.23 -3.38 16 28 C -0.11 -1.94 7.59 30.89 0.23 -1.70 16 29 C -0.12 -2.36 10.59 22.57 0.24 -2.12 16 30 H 0.06 0.40 8.14 -2.39 -0.02 0.39 16 31 H 0.05 0.43 8.14 -2.39 -0.02 0.42 16 32 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 33 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 34 H 0.05 0.46 6.42 -2.39 -0.02 0.44 16 35 H 0.05 0.40 8.14 -2.39 -0.02 0.38 16 36 H 0.06 0.34 8.14 -2.39 -0.02 0.32 16 37 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 38 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 39 H 0.21 0.10 8.06 -2.91 -0.02 0.07 16 40 H 0.41 3.58 7.85 -92.71 -0.73 2.85 16 41 H 0.10 2.39 7.46 -2.39 -0.02 2.37 16 42 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 43 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 44 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 45 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 46 H 0.06 2.62 8.10 -2.39 -0.02 2.60 16 47 H 0.37 16.30 5.79 -92.71 -0.54 15.76 16 48 H 0.26 15.85 8.31 -92.71 -0.77 15.08 16 49 H 0.07 1.93 8.14 -2.38 -0.02 1.91 16 50 H 0.09 2.43 8.12 -2.38 -0.02 2.41 16 51 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 52 H 0.11 1.38 8.12 -2.39 -0.02 1.36 16 53 H 0.13 2.81 8.06 -2.91 -0.02 2.78 16 Total: -1.00 -78.44 425.09 1.85 -76.59 By element: Atomic # 1 Polarization: 29.21 SS G_CDS: -1.17 Total: 28.04 kcal Atomic # 6 Polarization: -19.88 SS G_CDS: 6.02 Total: -13.85 kcal Atomic # 7 Polarization: -114.62 SS G_CDS: -4.84 Total: -119.46 kcal Atomic # 8 Polarization: -18.76 SS G_CDS: -0.07 Total: -18.83 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 1.90 Total: 47.51 kcal Total: -78.44 1.85 -76.59 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000965850679.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.805 kcal (2) G-P(sol) polarization free energy of solvation -78.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.593 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds