Wall clock time and date at job start Wed Apr 1 2020 04:21:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53007 * 109.46840 * 2 1 4 4 N 1.46498 * 109.47165 * 119.99544 * 2 1 3 5 5 C 1.35533 * 125.68379 * 305.43558 * 4 2 1 6 6 C 1.35448 * 108.87428 * 180.26153 * 5 4 2 7 7 C 1.39836 * 107.86552 * 359.76479 * 6 5 4 8 8 C 1.37657 * 125.67424 * 125.29833 * 4 2 1 9 9 C 1.46674 * 126.23051 * 0.02562 * 8 4 2 10 10 O 1.21690 * 120.00382 * 5.19541 * 9 8 4 11 11 N 1.34782 * 119.99671 * 185.19956 * 9 8 4 12 12 C 1.46501 * 120.00178 * 174.90017 * 11 9 8 13 13 H 1.08999 * 109.72986 * 34.99202 * 12 11 9 14 14 C 1.53337 * 109.73668 * 274.34276 * 12 11 9 15 15 C 1.52590 * 108.40362 * 176.16977 * 14 12 11 16 16 C 1.52999 * 111.05938 * 62.35014 * 15 14 12 17 17 H 1.09005 * 112.07298 * 74.00587 * 16 15 14 18 18 C 1.55335 * 106.42290 * 197.21155 * 16 15 14 19 19 N 1.47173 * 106.96591 * 91.62210 * 18 16 15 20 20 C 1.36936 * 125.65043 * 180.98029 * 19 18 16 21 21 H 1.08004 * 120.00480 * 174.85618 * 20 19 18 22 22 C 1.38819 * 120.00033 * 354.85518 * 20 19 18 23 23 N 1.31617 * 119.99801 * 5.27542 * 22 20 19 24 24 Si 1.86801 * 119.99960 * 185.27594 * 22 20 19 25 25 H 1.48497 * 109.46993 * 95.00082 * 24 22 20 26 26 H 1.48500 * 109.46984 * 214.99735 * 24 22 20 27 27 H 1.48501 * 109.47256 * 334.99539 * 24 22 20 28 28 C 1.47815 * 108.70034 * 0.95275 * 19 18 16 29 29 C 1.53898 * 104.06503 * 23.35484 * 28 19 18 30 30 H 1.09002 * 109.20454 * 77.29450 * 29 28 19 31 31 C 1.50731 * 113.02453 * 198.52862 * 29 28 19 32 32 H 1.08999 * 109.47264 * 300.00131 * 1 2 3 33 33 H 1.09007 * 109.47024 * 59.99587 * 1 2 3 34 34 H 1.08995 * 109.47137 * 179.97438 * 1 2 3 35 35 H 1.08994 * 109.47033 * 240.00570 * 2 1 3 36 36 H 1.09005 * 109.46728 * 180.02562 * 3 2 1 37 37 H 1.08996 * 109.47304 * 299.99673 * 3 2 1 38 38 H 1.08999 * 109.47300 * 59.99891 * 3 2 1 39 39 H 1.07999 * 125.56034 * 0.06440 * 5 4 2 40 40 H 1.08000 * 126.07056 * 179.79123 * 6 5 4 41 41 H 1.07998 * 126.45913 * 179.97438 * 7 6 5 42 42 H 0.96997 * 119.99785 * 354.89224 * 11 9 8 43 43 H 1.08998 * 109.67264 * 295.89455 * 14 12 11 44 44 H 1.08997 * 109.67655 * 56.40043 * 14 12 11 45 45 H 1.08999 * 109.15563 * 182.75460 * 15 14 12 46 46 H 1.08997 * 109.16063 * 301.93965 * 15 14 12 47 47 H 1.09005 * 109.96540 * 210.99609 * 18 16 15 48 48 H 1.08997 * 109.96350 * 332.24305 * 18 16 15 49 49 H 0.97000 * 119.99938 * 179.97438 * 23 22 20 50 50 H 1.09003 * 110.50746 * 142.00075 * 28 19 18 51 51 H 1.09005 * 110.51467 * 264.56904 * 28 19 18 52 52 H 1.09001 * 109.02363 * 304.54295 * 31 29 28 53 53 H 1.09003 * 109.02508 * 185.72150 * 31 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 1.6801 -0.3927 2.4744 6 6 2.3309 -1.2386 3.3083 7 6 3.1025 -2.1033 2.5258 8 6 2.8951 -1.7516 1.2089 9 6 3.5032 -2.3878 0.0355 10 8 3.3190 -1.9216 -1.0734 11 7 4.2660 -3.4889 0.1854 12 6 4.7813 -4.1892 -0.9937 13 1 5.0149 -3.4681 -1.7770 14 6 3.7332 -5.1857 -1.5032 15 6 4.2606 -5.8271 -2.7834 16 6 5.5447 -6.6145 -2.5152 17 1 5.3495 -7.5508 -1.9924 18 6 6.2192 -6.8382 -3.8965 19 7 7.1438 -5.7133 -4.1101 20 6 7.9231 -5.5203 -5.2195 21 1 8.5086 -4.6181 -5.3179 22 6 7.9606 -6.4844 -6.2176 23 7 7.1699 -7.5343 -6.1484 24 14 9.1334 -6.2916 -7.6587 25 1 10.3861 -7.0390 -7.3809 26 1 8.4986 -6.8293 -8.8888 27 1 9.4476 -4.8531 -7.8522 28 6 7.0913 -4.8258 -2.9292 29 6 6.5886 -5.7391 -1.7971 30 1 7.4092 -6.3688 -1.4532 31 6 6.0394 -4.9725 -0.6212 32 1 -0.3634 0.5138 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 -0.3633 -1.0276 -0.0005 35 1 1.8933 -0.5137 -0.8900 36 1 3.1300 1.4426 -0.0005 37 1 1.6767 1.9564 -0.8900 38 1 1.6766 1.9564 0.8900 39 1 1.0046 0.3932 2.7785 40 1 2.2653 -1.2446 4.3863 41 1 3.7409 -2.8968 2.8852 42 1 4.4739 -3.8175 1.0740 43 1 3.5623 -5.9554 -0.7505 44 1 2.8000 -4.6625 -1.7115 45 1 3.5039 -6.5021 -3.1832 46 1 4.4657 -5.0468 -3.5162 47 1 6.7713 -7.7781 -3.8932 48 1 5.4634 -6.8530 -4.6817 49 1 7.1958 -8.2077 -6.8461 50 1 8.0841 -4.4404 -2.6967 51 1 6.3942 -4.0051 -3.0988 52 1 6.7988 -4.2766 -0.2647 53 1 5.7982 -5.6731 0.1783 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000980246151.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:21:44 Heat of formation + Delta-G solvation = 4.515954 kcal Electronic energy + Delta-G solvation = -31139.192584 eV Core-core repulsion = 27203.686204 eV Total energy + Delta-G solvation = -3935.506380 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -42.43646 -41.17977 -39.78353 -37.03584 -36.34846 -34.95733 -33.34514 -32.33640 -30.96962 -30.73060 -29.73928 -28.26552 -27.62498 -26.70011 -24.24365 -23.58801 -23.22436 -22.56741 -21.71687 -21.17224 -20.57290 -19.48516 -18.88055 -18.39428 -17.45852 -16.85058 -16.79149 -16.43487 -15.93569 -15.68168 -15.58041 -15.37911 -15.08258 -14.96095 -14.84241 -14.76362 -14.07137 -14.03243 -13.73184 -13.63232 -13.57374 -13.26340 -13.17586 -13.14710 -13.05623 -12.96770 -12.86397 -12.71054 -12.49429 -12.31984 -12.20703 -12.14280 -12.08303 -11.82513 -11.76314 -11.30098 -11.11006 -10.93162 -10.81206 -10.67124 -10.07977 -9.64340 -9.11053 -8.86650 -7.85818 -5.20013 0.53167 1.42929 1.45028 1.53960 1.68495 1.89054 2.35557 2.43081 2.48450 3.31295 3.63422 3.66480 3.68188 3.74883 3.81702 3.94877 4.02958 4.15833 4.16721 4.19222 4.21193 4.35625 4.45764 4.50008 4.52279 4.55843 4.58461 4.62423 4.68286 4.73006 4.73615 4.79596 4.91860 4.93721 5.02896 5.03665 5.10684 5.14659 5.15501 5.23654 5.25523 5.32537 5.36089 5.42937 5.47476 5.52879 5.56178 5.73988 5.81493 5.90123 6.11137 6.20137 6.39073 6.60112 7.10833 7.24020 7.78279 8.44110 9.24626 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.018975 B = 0.002304 C = 0.002194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.295769 B =12150.870355 C =12761.511512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.099 3.901 3 C -0.151 4.151 4 N -0.408 5.408 5 C 0.021 3.979 6 C -0.218 4.218 7 C -0.133 4.133 8 C -0.089 4.089 9 C 0.582 3.418 10 O -0.592 6.592 11 N -0.696 5.696 12 C 0.153 3.847 13 H 0.058 0.942 14 C -0.110 4.110 15 C -0.096 4.096 16 C -0.095 4.095 17 H 0.103 0.897 18 C 0.190 3.810 19 N -0.628 5.628 20 C -0.242 4.242 21 H 0.077 0.923 22 C -0.067 4.067 23 N -0.950 5.950 24 Si 0.977 3.023 25 H -0.284 1.284 26 H -0.294 1.294 27 H -0.271 1.271 28 C 0.133 3.867 29 C -0.076 4.076 30 H 0.077 0.923 31 C -0.097 4.097 32 H 0.082 0.918 33 H 0.087 0.913 34 H 0.049 0.951 35 H 0.096 0.904 36 H 0.042 0.958 37 H 0.087 0.913 38 H 0.080 0.920 39 H 0.193 0.807 40 H 0.165 0.835 41 H 0.165 0.835 42 H 0.417 0.583 43 H 0.091 0.909 44 H 0.046 0.954 45 H 0.060 0.940 46 H 0.029 0.971 47 H 0.007 0.993 48 H 0.003 0.997 49 H 0.246 0.754 50 H 0.038 0.962 51 H 0.013 0.987 52 H 0.080 0.920 53 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.583 13.152 24.311 30.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.003 4.003 3 C -0.209 4.209 4 N -0.082 5.082 5 C -0.115 4.115 6 C -0.242 4.242 7 C -0.160 4.160 8 C -0.202 4.202 9 C 0.372 3.628 10 O -0.474 6.474 11 N -0.347 5.347 12 C 0.048 3.952 13 H 0.076 0.924 14 C -0.149 4.149 15 C -0.135 4.135 16 C -0.114 4.114 17 H 0.121 0.879 18 C 0.065 3.935 19 N -0.355 5.355 20 C -0.372 4.372 21 H 0.095 0.905 22 C -0.260 4.260 23 N -0.599 5.599 24 Si 0.805 3.195 25 H -0.211 1.211 26 H -0.221 1.221 27 H -0.195 1.195 28 C 0.008 3.992 29 C -0.096 4.096 30 H 0.096 0.904 31 C -0.135 4.135 32 H 0.101 0.899 33 H 0.106 0.894 34 H 0.068 0.932 35 H 0.114 0.886 36 H 0.061 0.939 37 H 0.105 0.895 38 H 0.099 0.901 39 H 0.210 0.790 40 H 0.182 0.818 41 H 0.183 0.817 42 H 0.255 0.745 43 H 0.110 0.890 44 H 0.065 0.935 45 H 0.079 0.921 46 H 0.048 0.952 47 H 0.025 0.975 48 H 0.022 0.978 49 H 0.056 0.944 50 H 0.057 0.943 51 H 0.031 0.969 52 H 0.098 0.902 53 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -13.766 13.545 22.983 30.020 hybrid contribution 0.804 -0.288 -1.415 1.653 sum -12.962 13.257 21.568 28.442 Atomic orbital electron populations 1.22105 0.91632 1.02630 1.04584 1.21955 0.96611 0.94691 0.87018 1.22084 1.00881 0.93544 1.04349 1.44371 1.32767 1.23702 1.07310 1.22497 1.03828 1.03301 0.81829 1.21161 1.03073 0.99516 1.00433 1.21707 1.02426 1.02007 0.89834 1.20062 1.06238 0.99106 0.94808 1.17410 0.78170 0.80138 0.87076 1.90734 1.63223 1.65106 1.28383 1.45503 1.51456 1.27114 1.10626 1.20845 0.93991 0.93172 0.87166 0.92409 1.21778 0.97296 0.98314 0.97487 1.21315 0.96524 0.98527 0.97087 1.22373 0.94340 0.98862 0.95865 0.87924 1.21238 0.90448 0.89379 0.92422 1.44896 1.48135 1.25770 1.16649 1.19449 1.18745 1.02526 0.96448 0.90511 1.25657 1.01556 0.96953 1.01836 1.70197 1.41435 1.12908 1.35359 0.85076 0.78298 0.77739 0.78346 1.21104 1.22087 1.19535 1.21677 0.97583 0.92897 0.86995 1.21249 0.97828 0.96572 0.93917 0.90428 1.21068 0.95539 0.99249 0.97613 0.89910 0.89380 0.93210 0.88632 0.93892 0.89455 0.90111 0.78980 0.81773 0.81738 0.74513 0.89029 0.93479 0.92091 0.95185 0.97514 0.97844 0.94436 0.94331 0.96915 0.90175 0.87818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.06 9.16 71.98 0.66 -1.40 16 2 C 0.10 1.89 3.45 44.99 0.16 2.05 16 3 C -0.15 -2.29 9.31 71.98 0.67 -1.62 16 4 N -0.41 -8.10 2.64 -488.67 -1.29 -9.39 16 5 C 0.02 0.30 10.34 83.48 0.86 1.17 16 6 C -0.22 -3.03 10.81 22.01 0.24 -2.79 16 7 C -0.13 -2.19 10.36 22.57 0.23 -1.96 16 8 C -0.09 -2.02 6.88 40.35 0.28 -1.74 16 9 C 0.58 15.99 7.75 86.44 0.67 16.66 16 10 O -0.59 -21.21 14.02 -4.32 -0.06 -21.27 16 11 N -0.70 -15.26 5.08 -446.26 -2.27 -17.53 16 12 C 0.15 4.08 2.34 45.04 0.11 4.19 16 13 H 0.06 2.03 6.19 -2.39 -0.01 2.02 16 14 C -0.11 -3.03 5.53 30.57 0.17 -2.86 16 15 C -0.10 -3.34 4.62 30.46 0.14 -3.20 16 16 C -0.10 -3.44 3.61 -9.65 -0.03 -3.47 16 17 H 0.10 3.17 8.14 -2.38 -0.02 3.15 16 18 C 0.19 9.67 4.67 87.05 0.41 10.07 16 19 N -0.63 -33.79 3.41 -690.55 -2.35 -36.14 16 20 C -0.24 -14.29 10.27 84.04 0.86 -13.43 16 21 H 0.08 4.38 7.83 -2.91 -0.02 4.35 16 22 C -0.07 -3.98 5.48 84.86 0.47 -3.52 16 23 N -0.95 -59.17 10.35 21.65 0.22 -58.95 16 24 Si 0.98 47.59 29.56 68.60 2.03 49.62 16 25 H -0.28 -13.51 7.11 99.48 0.71 -12.80 16 26 H -0.29 -14.34 7.11 99.48 0.71 -13.64 16 27 H -0.27 -12.55 7.11 99.48 0.71 -11.85 16 28 C 0.13 5.69 6.18 86.43 0.53 6.22 16 29 C -0.08 -2.48 2.81 -10.89 -0.03 -2.51 16 30 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 31 C -0.10 -2.22 4.86 29.80 0.14 -2.08 16 32 H 0.08 0.75 7.69 -2.39 -0.02 0.73 16 33 H 0.09 0.98 8.14 -2.38 -0.02 0.96 16 34 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 35 H 0.10 2.58 5.39 -2.39 -0.01 2.57 16 36 H 0.04 0.83 8.14 -2.38 -0.02 0.81 16 37 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.08 0.87 8.02 -2.39 -0.02 0.85 16 39 H 0.19 1.41 7.89 -2.91 -0.02 1.39 16 40 H 0.16 1.42 8.06 -2.91 -0.02 1.40 16 41 H 0.17 1.76 7.45 -2.91 -0.02 1.74 16 42 H 0.42 6.01 7.51 -92.71 -0.70 5.32 16 43 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 44 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 45 H 0.06 2.05 8.14 -2.39 -0.02 2.04 16 46 H 0.03 1.26 7.16 -2.39 -0.02 1.24 16 47 H 0.01 0.38 7.38 -2.38 -0.02 0.36 16 48 H 0.00 0.19 7.14 -2.39 -0.02 0.18 16 49 H 0.25 14.87 8.31 -92.71 -0.77 14.10 16 50 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 51 H 0.01 0.58 6.17 -2.38 -0.01 0.57 16 52 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 53 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 Total: -1.00 -78.75 404.68 3.01 -75.74 By element: Atomic # 1 Polarization: 17.94 SS G_CDS: 0.20 Total: 18.13 kcal Atomic # 6 Polarization: -6.75 SS G_CDS: 6.53 Total: -0.22 kcal Atomic # 7 Polarization: -116.32 SS G_CDS: -5.69 Total: -122.01 kcal Atomic # 8 Polarization: -21.21 SS G_CDS: -0.06 Total: -21.27 kcal Atomic # 14 Polarization: 47.59 SS G_CDS: 2.03 Total: 49.62 kcal Total: -78.75 3.01 -75.74 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980246151.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.257 kcal (2) G-P(sol) polarization free energy of solvation -78.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.741 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds