Wall clock time and date at job start Wed Apr 1 2020 04:21:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.52997 * 109.46973 * 2 1 4 4 N 1.46495 * 109.46894 * 120.00061 * 2 1 3 5 5 C 1.35533 * 125.68167 * 305.22734 * 4 2 1 6 6 C 1.35455 * 108.87183 * 180.26684 * 5 4 2 7 7 C 1.39829 * 107.86370 * 359.77376 * 6 5 4 8 8 C 1.37656 * 125.67625 * 125.10032 * 4 2 1 9 9 C 1.46681 * 126.23463 * 0.02562 * 8 4 2 10 10 O 1.21693 * 119.99529 * 4.85545 * 9 8 4 11 11 N 1.34768 * 120.00143 * 184.85987 * 9 8 4 12 12 C 1.46504 * 120.00001 * 174.86822 * 11 9 8 13 13 H 1.08998 * 109.02716 * 35.27565 * 12 11 9 14 14 C 1.52522 * 109.04299 * 276.31428 * 12 11 9 15 15 C 1.53801 * 111.70892 * 185.31667 * 14 12 11 16 16 C 1.51616 * 106.96273 * 57.65015 * 15 14 12 17 17 H 1.09000 * 110.50354 * 55.16244 * 16 15 14 18 18 C 1.53055 * 116.67906 * 183.69810 * 16 15 14 19 19 N 1.48654 * 103.44623 * 155.89064 * 18 16 15 20 20 C 1.36943 * 125.78896 * 155.59855 * 19 18 16 21 21 H 1.08000 * 120.00418 * 180.02562 * 20 19 18 22 22 C 1.38818 * 119.99651 * 0.02670 * 20 19 18 23 23 N 1.31618 * 119.99822 * 0.02562 * 22 20 19 24 24 Si 1.86795 * 120.00057 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.46755 * 89.99928 * 24 22 20 26 26 H 1.48496 * 109.47172 * 210.00359 * 24 22 20 27 27 H 1.48503 * 109.47220 * 330.00316 * 24 22 20 28 28 C 1.48900 * 108.52375 * 335.22522 * 19 18 16 29 29 C 1.52333 * 105.53642 * 357.43436 * 28 19 18 30 30 H 1.08999 * 109.88452 * 271.57749 * 29 28 19 31 31 C 1.51440 * 117.45330 * 145.04428 * 29 28 19 32 32 H 1.08998 * 109.46685 * 300.00151 * 1 2 3 33 33 H 1.08999 * 109.46902 * 59.99710 * 1 2 3 34 34 H 1.08998 * 109.46662 * 180.02562 * 1 2 3 35 35 H 1.08998 * 109.46685 * 239.99849 * 2 1 3 36 36 H 1.08997 * 109.47084 * 60.00091 * 3 2 1 37 37 H 1.09002 * 109.46695 * 180.02562 * 3 2 1 38 38 H 1.08999 * 109.47086 * 300.00172 * 3 2 1 39 39 H 1.08002 * 125.56217 * 0.07535 * 5 4 2 40 40 H 1.08000 * 126.06582 * 179.78715 * 6 5 4 41 41 H 1.08007 * 126.45722 * 179.97438 * 7 6 5 42 42 H 0.97005 * 120.00126 * 355.13948 * 11 9 8 43 43 H 1.08990 * 109.03623 * 305.96665 * 14 12 11 44 44 H 1.09002 * 109.03112 * 64.82322 * 14 12 11 45 45 H 1.08997 * 110.00463 * 298.27128 * 15 14 12 46 46 H 1.09002 * 109.93659 * 176.99045 * 15 14 12 47 47 H 1.09003 * 110.62707 * 274.38238 * 18 16 15 48 48 H 1.09002 * 110.62886 * 37.40126 * 18 16 15 49 49 H 0.97000 * 119.99643 * 179.97438 * 23 22 20 50 50 H 1.08999 * 110.55937 * 238.32387 * 28 19 18 51 51 H 1.09001 * 110.11125 * 116.31174 * 28 19 18 52 52 H 1.09000 * 109.93497 * 61.34266 * 31 29 28 53 53 H 1.09000 * 109.93853 * 300.11394 * 31 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 1.6831 -0.3903 2.4746 6 6 2.3329 -1.2372 3.3084 7 6 3.1008 -2.1049 2.5255 8 6 2.8922 -1.7542 1.2086 9 6 3.4967 -2.3935 0.0350 10 8 3.3069 -1.9315 -1.0748 11 7 4.2621 -3.4924 0.1856 12 6 4.7732 -4.1963 -0.9932 13 1 5.0027 -3.4675 -1.7705 14 6 3.7002 -5.1508 -1.5070 15 6 4.2185 -6.0184 -2.6664 16 6 5.4307 -6.7685 -2.1500 17 1 5.1776 -7.3300 -1.2507 18 6 6.1802 -7.6412 -3.1595 19 7 7.5496 -7.7321 -2.5883 20 6 8.4515 -8.7349 -2.8258 21 1 9.4251 -8.7073 -2.3592 22 6 8.1142 -9.7868 -3.6665 23 7 6.9279 -9.8202 -4.2356 24 14 9.3446 -11.1543 -3.9911 25 1 9.1668 -12.2298 -2.9826 26 1 9.1214 -11.7086 -5.3505 27 1 10.7238 -10.6117 -3.8981 28 6 7.7801 -6.5441 -1.7208 29 6 6.5185 -5.6990 -1.8426 30 1 6.6121 -5.0124 -2.6839 31 6 6.0616 -4.9452 -0.6112 32 1 -0.3632 0.5139 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 -0.3632 -1.0277 0.0005 35 1 1.8933 -0.5139 -0.8900 36 1 1.6767 1.9563 0.8900 37 1 3.1301 1.4424 -0.0005 38 1 1.6767 1.9563 -0.8900 39 1 1.0103 0.3978 2.7789 40 1 2.2691 -1.2417 4.3865 41 1 3.7376 -2.8998 2.8848 42 1 4.4713 -3.8197 1.0745 43 1 3.3813 -5.7994 -0.6913 44 1 2.8448 -4.5707 -1.8534 45 1 4.5030 -5.3858 -3.5072 46 1 3.4479 -6.7248 -2.9753 47 1 5.7251 -8.6296 -3.2252 48 1 6.2035 -7.1624 -4.1384 49 1 6.6924 -10.5551 -4.8233 50 1 8.6456 -5.9794 -2.0671 51 1 7.9242 -6.8574 -0.6868 52 1 6.8284 -4.2335 -0.3052 53 1 5.8583 -5.6453 0.1991 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000980246158.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:21:54 Heat of formation + Delta-G solvation = 9.324459 kcal Electronic energy + Delta-G solvation = -30751.013284 eV Core-core repulsion = 26815.715416 eV Total energy + Delta-G solvation = -3935.297868 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -42.44358 -41.10946 -39.77143 -37.11481 -36.36151 -34.99283 -33.55651 -32.15572 -30.87010 -30.72887 -29.65011 -28.25198 -27.73087 -26.74937 -24.16953 -23.56303 -23.13586 -21.90576 -21.55851 -21.24762 -20.83405 -20.15836 -18.78500 -18.59923 -17.10165 -16.92124 -16.65820 -16.40775 -15.85317 -15.70046 -15.61668 -15.56250 -15.20117 -14.97852 -14.81808 -14.78325 -14.10673 -13.69770 -13.61456 -13.56389 -13.51587 -13.42626 -13.23887 -13.11836 -13.03887 -12.97421 -12.90801 -12.73850 -12.64836 -12.30841 -12.13725 -12.07162 -11.93626 -11.76312 -11.71572 -11.46670 -11.18907 -10.89557 -10.79223 -10.69038 -10.11298 -9.64960 -9.12129 -8.87020 -7.75020 -5.18665 0.51673 1.46445 1.48697 1.57172 1.67017 1.87772 2.33656 2.41819 2.50883 3.34690 3.56270 3.62785 3.67220 3.67609 3.76724 3.96069 3.98810 4.10530 4.16127 4.19969 4.34789 4.43855 4.44824 4.45821 4.50715 4.56357 4.59917 4.68336 4.69490 4.72260 4.75157 4.78809 4.93618 4.96360 5.01014 5.04600 5.06404 5.13253 5.16786 5.19055 5.24380 5.25920 5.35490 5.37836 5.46821 5.50937 5.56644 5.75023 5.84953 5.88384 6.10265 6.30503 6.38432 6.56675 7.10791 7.19864 7.77503 8.44707 9.27422 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.028523 B = 0.001996 C = 0.001943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.420078 B =14022.481563 C =14409.579269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.099 3.901 3 C -0.151 4.151 4 N -0.407 5.407 5 C 0.023 3.977 6 C -0.220 4.220 7 C -0.136 4.136 8 C -0.089 4.089 9 C 0.585 3.415 10 O -0.587 6.587 11 N -0.701 5.701 12 C 0.160 3.840 13 H 0.069 0.931 14 C -0.113 4.113 15 C -0.092 4.092 16 C -0.101 4.101 17 H 0.072 0.928 18 C 0.168 3.832 19 N -0.634 5.634 20 C -0.235 4.235 21 H 0.081 0.919 22 C -0.072 4.072 23 N -0.951 5.951 24 Si 0.980 3.020 25 H -0.284 1.284 26 H -0.296 1.296 27 H -0.271 1.271 28 C 0.139 3.861 29 C -0.090 4.090 30 H 0.062 0.938 31 C -0.093 4.093 32 H 0.080 0.920 33 H 0.089 0.911 34 H 0.048 0.952 35 H 0.100 0.900 36 H 0.078 0.922 37 H 0.043 0.957 38 H 0.088 0.912 39 H 0.194 0.806 40 H 0.163 0.837 41 H 0.161 0.839 42 H 0.415 0.585 43 H 0.073 0.927 44 H 0.055 0.945 45 H 0.056 0.944 46 H 0.067 0.933 47 H 0.069 0.931 48 H -0.017 1.017 49 H 0.245 0.755 50 H 0.026 0.974 51 H 0.036 0.964 52 H 0.084 0.916 53 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.031 22.465 16.476 31.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.002 4.002 3 C -0.209 4.209 4 N -0.081 5.081 5 C -0.113 4.113 6 C -0.243 4.243 7 C -0.163 4.163 8 C -0.202 4.202 9 C 0.375 3.625 10 O -0.470 6.470 11 N -0.351 5.351 12 C 0.056 3.944 13 H 0.087 0.913 14 C -0.151 4.151 15 C -0.131 4.131 16 C -0.121 4.121 17 H 0.090 0.910 18 C 0.044 3.956 19 N -0.361 5.361 20 C -0.364 4.364 21 H 0.098 0.902 22 C -0.265 4.265 23 N -0.601 5.601 24 Si 0.808 3.192 25 H -0.211 1.211 26 H -0.222 1.222 27 H -0.196 1.196 28 C 0.015 3.985 29 C -0.110 4.110 30 H 0.081 0.919 31 C -0.131 4.131 32 H 0.099 0.901 33 H 0.108 0.892 34 H 0.067 0.933 35 H 0.118 0.882 36 H 0.097 0.903 37 H 0.062 0.938 38 H 0.107 0.893 39 H 0.211 0.789 40 H 0.180 0.820 41 H 0.179 0.821 42 H 0.253 0.747 43 H 0.092 0.908 44 H 0.074 0.926 45 H 0.075 0.925 46 H 0.085 0.915 47 H 0.087 0.913 48 H 0.001 0.999 49 H 0.055 0.945 50 H 0.044 0.956 51 H 0.054 0.946 52 H 0.103 0.897 53 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -14.233 22.777 15.238 30.879 hybrid contribution 0.879 -1.184 -0.499 1.557 sum -13.354 21.592 14.739 29.356 Atomic orbital electron populations 1.22114 0.91739 1.02598 1.04585 1.21985 0.96539 0.94721 0.86984 1.22086 1.00940 0.93488 1.04356 1.44377 1.32838 1.23518 1.07322 1.22484 1.03762 1.03211 0.81884 1.21155 1.03220 0.99555 1.00418 1.21697 1.02511 1.01972 0.90126 1.20062 1.06311 0.99004 0.94792 1.17330 0.78030 0.80037 0.87088 1.90709 1.63084 1.65215 1.27973 1.45613 1.51535 1.27227 1.10736 1.20867 0.92966 0.93219 0.87373 0.91323 1.21777 0.97713 0.97430 0.98225 1.21184 0.96768 0.97685 0.97464 1.22164 0.94733 0.95915 0.99250 0.90970 1.21366 0.84303 0.98526 0.91450 1.45663 1.13578 1.22493 1.54326 1.19487 0.95409 0.98968 1.22525 0.90154 1.25644 0.99221 1.01497 1.00096 1.70085 1.21169 1.33045 1.35782 0.85047 0.78421 0.79071 0.76614 1.21095 1.22216 1.19588 1.21258 0.95769 0.87515 0.94006 1.21590 0.94722 0.96048 0.98621 0.91920 1.21432 0.95509 0.99046 0.97111 0.90121 0.89196 0.93274 0.88244 0.90331 0.93762 0.89274 0.78933 0.81986 0.82124 0.74729 0.90809 0.92648 0.92527 0.91480 0.91330 0.99903 0.94488 0.95636 0.94577 0.89699 0.89589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 9.16 71.99 0.66 -1.17 16 2 C 0.10 1.70 3.45 44.99 0.16 1.85 16 3 C -0.15 -1.97 9.30 71.98 0.67 -1.30 16 4 N -0.41 -7.58 2.64 -488.66 -1.29 -8.87 16 5 C 0.02 0.31 10.33 83.48 0.86 1.17 16 6 C -0.22 -3.08 10.81 22.01 0.24 -2.84 16 7 C -0.14 -2.27 10.35 22.57 0.23 -2.04 16 8 C -0.09 -1.92 6.89 40.35 0.28 -1.64 16 9 C 0.59 14.91 7.71 86.45 0.67 15.58 16 10 O -0.59 -18.84 14.00 -4.33 -0.06 -18.90 16 11 N -0.70 -14.74 5.03 -445.91 -2.24 -16.98 16 12 C 0.16 3.96 2.47 45.12 0.11 4.07 16 13 H 0.07 2.00 7.49 -2.39 -0.02 1.99 16 14 C -0.11 -2.96 5.35 30.71 0.16 -2.80 16 15 C -0.09 -2.90 5.71 30.41 0.17 -2.73 16 16 C -0.10 -3.76 2.50 -10.33 -0.03 -3.78 16 17 H 0.07 2.66 8.01 -2.39 -0.02 2.64 16 18 C 0.17 8.48 5.52 85.98 0.47 8.95 16 19 N -0.63 -33.43 3.46 -691.33 -2.40 -35.83 16 20 C -0.23 -13.45 10.30 84.03 0.87 -12.58 16 21 H 0.08 4.40 7.83 -2.91 -0.02 4.37 16 22 C -0.07 -4.20 5.49 84.86 0.47 -3.74 16 23 N -0.95 -58.01 10.11 21.65 0.22 -57.79 16 24 Si 0.98 46.55 29.55 68.60 2.03 48.58 16 25 H -0.28 -13.15 7.11 99.48 0.71 -12.45 16 26 H -0.30 -14.14 7.11 99.48 0.71 -13.43 16 27 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 28 C 0.14 5.69 7.04 85.69 0.60 6.30 16 29 C -0.09 -3.02 2.28 -10.62 -0.02 -3.05 16 30 H 0.06 2.20 7.92 -2.39 -0.02 2.18 16 31 C -0.09 -2.24 5.16 30.37 0.16 -2.08 16 32 H 0.08 0.64 7.70 -2.39 -0.02 0.63 16 33 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.05 0.73 8.14 -2.39 -0.02 0.72 16 35 H 0.10 2.39 5.38 -2.39 -0.01 2.38 16 36 H 0.08 0.72 8.02 -2.39 -0.02 0.70 16 37 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 38 H 0.09 0.90 8.14 -2.39 -0.02 0.89 16 39 H 0.19 1.30 7.90 -2.91 -0.02 1.28 16 40 H 0.16 1.49 8.06 -2.91 -0.02 1.46 16 41 H 0.16 1.89 7.45 -2.91 -0.02 1.86 16 42 H 0.42 6.32 7.50 -92.70 -0.70 5.62 16 43 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 44 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 45 H 0.06 1.85 7.98 -2.39 -0.02 1.83 16 46 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 47 H 0.07 3.95 5.93 -2.39 -0.01 3.94 16 48 H -0.02 -0.94 8.14 -2.39 -0.02 -0.96 16 49 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16 50 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 51 H 0.04 1.40 8.08 -2.39 -0.02 1.38 16 52 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 53 H 0.09 1.87 8.03 -2.39 -0.02 1.85 16 Total: -1.00 -73.97 408.95 3.18 -70.79 By element: Atomic # 1 Polarization: 20.64 SS G_CDS: 0.19 Total: 20.83 kcal Atomic # 6 Polarization: -8.56 SS G_CDS: 6.73 Total: -1.83 kcal Atomic # 7 Polarization: -113.76 SS G_CDS: -5.71 Total: -119.47 kcal Atomic # 8 Polarization: -18.84 SS G_CDS: -0.06 Total: -18.90 kcal Atomic # 14 Polarization: 46.55 SS G_CDS: 2.03 Total: 48.58 kcal Total: -73.97 3.18 -70.79 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980246158.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.112 kcal (2) G-P(sol) polarization free energy of solvation -73.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.787 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds