Wall clock time and date at job start Wed Apr 1 2020 04:33:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47171 * 2 1 4 4 N 1.46496 * 109.47481 * 120.00313 * 2 1 3 5 5 C 1.46504 * 119.99708 * 305.15278 * 4 2 1 6 6 C 1.39050 * 120.00533 * 125.14979 * 4 2 1 7 7 C 1.39215 * 119.93345 * 185.43539 * 6 4 2 8 8 C 1.37609 * 120.06948 * 179.97438 * 7 6 4 9 9 C 1.39799 * 119.92807 * 0.02929 * 8 7 6 10 10 C 1.47523 * 120.06424 * 179.97438 * 9 8 7 11 11 O 1.21592 * 120.00370 * 7.45087 * 10 9 8 12 12 N 1.34777 * 119.99380 * 187.45271 * 10 9 8 13 13 C 1.47019 * 125.65428 * 354.19322 * 12 10 9 14 14 C 1.54318 * 107.27296 * 181.08015 * 13 12 10 15 15 C 1.55443 * 102.96965 * 22.19353 * 14 13 12 16 16 H 1.08997 * 111.01355 * 82.52918 * 15 14 13 17 17 N 1.46503 * 111.11574 * 206.46469 * 15 14 13 18 18 C 1.46493 * 120.00319 * 53.55673 * 17 15 14 19 19 C 1.36943 * 119.99926 * 233.55605 * 17 15 14 20 20 H 1.08007 * 119.99886 * 34.10663 * 19 17 15 21 21 C 1.38809 * 120.00136 * 214.11135 * 19 17 15 22 22 N 1.31625 * 120.00115 * 355.27463 * 21 19 17 23 23 Si 1.86800 * 120.00355 * 175.27688 * 21 19 17 24 24 H 1.48497 * 109.46925 * 89.99542 * 23 21 19 25 25 H 1.48498 * 109.47243 * 210.00257 * 23 21 19 26 26 H 1.48499 * 109.46874 * 329.99781 * 23 21 19 27 27 C 1.47429 * 125.64302 * 174.21729 * 12 10 9 28 28 C 1.39793 * 119.86342 * 0.24421 * 9 8 7 29 29 C 1.37610 * 119.92846 * 359.47840 * 28 9 8 30 30 H 1.08997 * 109.46926 * 299.99714 * 1 2 3 31 31 H 1.09002 * 109.47298 * 59.99732 * 1 2 3 32 32 H 1.09001 * 109.47169 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.47438 * 240.00390 * 2 1 3 34 34 H 1.09001 * 109.47264 * 180.02562 * 3 2 1 35 35 H 1.09002 * 109.47229 * 300.00311 * 3 2 1 36 36 H 1.08997 * 109.46962 * 60.00308 * 3 2 1 37 37 H 1.09005 * 109.47234 * 269.99749 * 5 4 2 38 38 H 1.08999 * 109.47376 * 29.99887 * 5 4 2 39 39 H 1.08997 * 109.47077 * 150.00251 * 5 4 2 40 40 H 1.08003 * 119.96655 * 0.02756 * 7 6 4 41 41 H 1.07994 * 120.03728 * 179.97438 * 8 7 6 42 42 H 1.09005 * 109.88391 * 300.49851 * 13 12 10 43 43 H 1.08998 * 109.88257 * 61.66176 * 13 12 10 44 44 H 1.09000 * 110.71796 * 140.55577 * 14 13 12 45 45 H 1.09004 * 110.72135 * 263.64929 * 14 13 12 46 46 H 1.09005 * 109.47275 * 94.98456 * 18 17 15 47 47 H 1.09001 * 109.47549 * 214.98808 * 18 17 15 48 48 H 1.09000 * 109.47170 * 334.98776 * 18 17 15 49 49 H 0.96989 * 120.00552 * 180.02562 * 22 21 19 50 50 H 1.08996 * 110.36676 * 274.68871 * 27 12 10 51 51 H 1.09001 * 110.36894 * 36.90383 * 27 12 10 52 52 H 1.08004 * 120.03045 * 179.74584 * 28 9 8 53 53 H 1.08005 * 119.96219 * 180.29776 * 29 28 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 1.5739 -0.2593 2.5237 6 6 2.9038 -1.7555 1.0713 7 6 3.2788 -2.4828 2.1976 8 6 4.1544 -3.5375 2.0773 9 6 4.6680 -3.8780 0.8224 10 6 5.6073 -5.0077 0.6901 11 8 5.8312 -5.7274 1.6443 12 7 6.2175 -5.2421 -0.4886 13 6 5.9509 -4.5316 -1.7478 14 6 6.8607 -5.1550 -2.8271 15 6 7.1800 -6.5605 -2.2451 16 1 6.3752 -7.2639 -2.4583 17 7 8.4606 -7.0623 -2.7497 18 6 9.6704 -6.2469 -2.6172 19 6 8.5267 -8.2936 -3.3454 20 1 7.6952 -8.6547 -3.9327 21 6 9.6621 -9.0777 -3.1943 22 7 10.7109 -8.6013 -2.5575 23 14 9.7017 -10.8089 -3.8948 24 1 10.2176 -10.7680 -5.2867 25 1 10.5898 -11.6595 -3.0623 26 1 8.3291 -11.3755 -3.8921 27 6 7.2625 -6.2540 -0.7288 28 6 4.2939 -3.1421 -0.3058 29 6 3.4135 -2.0921 -0.1797 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 3.1300 1.4425 -0.0005 35 1 1.6766 1.9564 -0.8900 36 1 1.6767 1.9563 0.8900 37 1 2.2558 0.5001 2.9064 38 1 0.5691 0.1571 2.4530 39 1 1.5661 -1.1143 3.1998 40 1 2.8814 -2.2195 3.1668 41 1 4.4453 -4.1010 2.9514 42 1 4.9048 -4.6546 -2.0286 43 1 6.1839 -3.4731 -1.6327 44 1 6.3303 -5.2420 -3.7754 45 1 7.7718 -4.5691 -2.9489 46 1 10.2081 -6.5385 -1.7149 47 1 10.3094 -6.4008 -3.4867 48 1 9.3939 -5.1946 -2.5512 49 1 11.5044 -9.1490 -2.4523 50 1 8.2439 -5.8531 -0.4757 51 1 7.0598 -7.1539 -0.1483 52 1 4.6922 -3.4003 -1.2759 53 1 3.1204 -1.5263 -1.0517 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000980550063.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:33:03 Heat of formation + Delta-G solvation = 38.990072 kcal Electronic energy + Delta-G solvation = -30423.279598 eV Core-core repulsion = 26489.268127 eV Total energy + Delta-G solvation = -3934.011471 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.57248 -40.36775 -38.88773 -37.74545 -36.59219 -33.96662 -33.32977 -32.04366 -31.40998 -30.86892 -29.08545 -28.06319 -28.02038 -27.48326 -25.53196 -24.37801 -23.80430 -22.54975 -21.25061 -20.90342 -20.49042 -18.94845 -18.58565 -18.15637 -17.50469 -16.99031 -16.43736 -16.31083 -15.76004 -15.68991 -15.62322 -15.16031 -14.95851 -14.80460 -14.73984 -14.50603 -14.32499 -14.12588 -13.94783 -13.83926 -13.55130 -13.41962 -13.32709 -13.14273 -13.01937 -12.82880 -12.77410 -12.69022 -12.41793 -12.27456 -12.17384 -12.13944 -12.00382 -11.90371 -11.68319 -11.40863 -11.25655 -10.92997 -10.80101 -10.59506 -9.96046 -9.66836 -8.65221 -8.24479 -7.87079 -5.44544 0.10143 0.51697 1.45600 1.48538 1.56965 1.91591 1.99168 2.12804 2.49538 2.98541 3.27280 3.54073 3.61234 3.75462 3.86910 3.93951 4.04224 4.11076 4.18576 4.19396 4.31521 4.33127 4.34981 4.38573 4.51155 4.52995 4.61570 4.66541 4.71531 4.77414 4.81602 4.82982 4.86392 4.89713 4.99895 5.00382 5.04003 5.11989 5.19445 5.23571 5.28775 5.30173 5.31774 5.38723 5.42487 5.45475 5.58470 5.67311 5.75575 5.79434 6.33104 6.37249 6.50267 6.59363 7.15300 7.18006 7.82469 8.32010 9.15508 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.023971 B = 0.002037 C = 0.001962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.774664 B =13743.762469 C =14268.924117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.130 3.870 3 C -0.159 4.159 4 N -0.617 5.617 5 C 0.079 3.921 6 C 0.244 3.756 7 C -0.213 4.213 8 C -0.024 4.024 9 C -0.217 4.217 10 C 0.565 3.435 11 O -0.605 6.605 12 N -0.611 5.611 13 C 0.097 3.903 14 C -0.142 4.142 15 C 0.167 3.833 16 H 0.074 0.926 17 N -0.601 5.601 18 C 0.175 3.825 19 C -0.273 4.273 20 H 0.072 0.928 21 C -0.042 4.042 22 N -0.932 5.932 23 Si 0.967 3.033 24 H -0.280 1.280 25 H -0.297 1.297 26 H -0.268 1.268 27 C 0.097 3.903 28 C -0.065 4.065 29 C -0.210 4.210 30 H 0.064 0.936 31 H 0.081 0.919 32 H 0.050 0.950 33 H 0.096 0.904 34 H 0.048 0.952 35 H 0.080 0.920 36 H 0.059 0.941 37 H 0.054 0.946 38 H 0.086 0.914 39 H 0.071 0.929 40 H 0.144 0.856 41 H 0.116 0.884 42 H 0.103 0.897 43 H 0.100 0.900 44 H 0.102 0.898 45 H 0.077 0.923 46 H -0.002 1.002 47 H 0.018 0.982 48 H 0.035 0.965 49 H 0.250 0.750 50 H 0.047 0.953 51 H 0.038 0.962 52 H 0.176 0.824 53 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.200 24.672 3.478 34.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.027 3.973 3 C -0.218 4.218 4 N -0.325 5.325 5 C -0.063 4.063 6 C 0.138 3.862 7 C -0.236 4.236 8 C -0.044 4.044 9 C -0.222 4.222 10 C 0.359 3.641 11 O -0.488 6.488 12 N -0.343 5.343 13 C -0.024 4.024 14 C -0.181 4.181 15 C 0.058 3.942 16 H 0.092 0.908 17 N -0.322 5.322 18 C 0.031 3.969 19 C -0.403 4.403 20 H 0.090 0.910 21 C -0.239 4.239 22 N -0.577 5.577 23 Si 0.795 3.205 24 H -0.206 1.206 25 H -0.223 1.223 26 H -0.193 1.193 27 C -0.028 4.028 28 C -0.084 4.084 29 C -0.232 4.232 30 H 0.083 0.917 31 H 0.100 0.900 32 H 0.069 0.931 33 H 0.114 0.886 34 H 0.067 0.933 35 H 0.099 0.901 36 H 0.078 0.922 37 H 0.072 0.928 38 H 0.104 0.896 39 H 0.090 0.910 40 H 0.162 0.838 41 H 0.134 0.866 42 H 0.121 0.879 43 H 0.118 0.882 44 H 0.120 0.880 45 H 0.095 0.905 46 H 0.017 0.983 47 H 0.037 0.963 48 H 0.054 0.946 49 H 0.059 0.941 50 H 0.065 0.935 51 H 0.056 0.944 52 H 0.193 0.807 53 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -23.090 24.427 4.064 33.858 hybrid contribution 0.935 -1.553 0.369 1.850 sum -22.155 22.875 4.433 32.152 Atomic orbital electron populations 1.22150 0.93995 1.02224 1.03412 1.21318 0.94849 0.93378 0.87740 1.22152 1.01103 0.95369 1.03141 1.46763 1.46499 1.31936 1.07272 1.21841 1.00758 1.00506 0.83196 1.18209 0.87697 0.86435 0.93888 1.20722 1.04630 0.99210 0.99000 1.20977 0.92831 0.94518 0.96033 1.19455 1.05898 1.00519 0.96332 1.18589 0.80171 0.84534 0.80839 1.90704 1.66946 1.51341 1.39825 1.48378 1.38924 1.37275 1.09721 1.22747 1.00574 0.97035 0.82049 1.23196 1.00131 0.96115 0.98653 1.21673 0.88620 0.95024 0.88840 0.90800 1.43894 1.03969 1.17277 1.67083 1.20581 0.87494 0.90674 0.98189 1.19475 1.02579 0.93372 1.24905 0.91007 1.26167 0.97192 1.01390 0.99123 1.70201 1.04266 1.36921 1.46265 0.85285 0.77673 0.80199 0.77367 1.20635 1.22338 1.19318 1.22713 0.89791 0.90354 0.99977 1.22663 0.93734 0.92236 0.99735 1.20932 1.03408 1.02073 0.96825 0.91676 0.89974 0.93086 0.88570 0.93269 0.90103 0.92160 0.92769 0.89556 0.91010 0.83832 0.86618 0.87890 0.88240 0.88003 0.90482 0.98321 0.96309 0.94636 0.94119 0.93472 0.94352 0.80726 0.82891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.97 9.07 71.98 0.65 -0.32 16 2 C 0.13 1.08 3.16 44.99 0.14 1.22 16 3 C -0.16 -1.08 9.27 71.98 0.67 -0.42 16 4 N -0.62 -7.42 2.88 -698.09 -2.01 -9.43 16 5 C 0.08 0.67 9.56 127.77 1.22 1.89 16 6 C 0.24 4.26 6.54 38.47 0.25 4.51 16 7 C -0.21 -4.32 9.22 22.36 0.21 -4.12 16 8 C -0.02 -0.64 9.58 22.50 0.22 -0.42 16 9 C -0.22 -6.29 5.88 -20.08 -0.12 -6.40 16 10 C 0.57 21.24 7.80 86.69 0.68 21.92 16 11 O -0.60 -28.18 16.59 -4.01 -0.07 -28.25 16 12 N -0.61 -21.28 3.33 -831.24 -2.77 -24.05 16 13 C 0.10 2.36 4.86 86.73 0.42 2.78 16 14 C -0.14 -4.07 6.48 31.88 0.21 -3.86 16 15 C 0.17 6.75 3.56 46.48 0.17 6.92 16 16 H 0.07 3.02 7.96 -2.39 -0.02 3.00 16 17 N -0.60 -29.88 2.95 -694.46 -2.05 -31.92 16 18 C 0.18 8.64 7.80 127.77 1.00 9.64 16 19 C -0.27 -14.94 9.51 84.03 0.80 -14.14 16 20 H 0.07 3.77 7.83 -2.91 -0.02 3.75 16 21 C -0.04 -2.40 5.39 84.86 0.46 -1.94 16 22 N -0.93 -55.82 10.64 21.65 0.23 -55.59 16 23 Si 0.97 45.27 29.56 68.60 2.03 47.29 16 24 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 25 H -0.30 -14.15 7.11 99.48 0.71 -13.45 16 26 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 27 C 0.10 4.12 6.52 86.85 0.57 4.69 16 28 C -0.07 -1.39 8.59 22.50 0.19 -1.19 16 29 C -0.21 -3.58 9.24 22.36 0.21 -3.37 16 30 H 0.06 0.33 6.52 -2.39 -0.02 0.31 16 31 H 0.08 0.30 8.14 -2.39 -0.02 0.28 16 32 H 0.05 0.44 8.14 -2.39 -0.02 0.42 16 33 H 0.10 0.77 5.35 -2.39 -0.01 0.75 16 34 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 35 H 0.08 0.34 8.14 -2.39 -0.02 0.32 16 36 H 0.06 0.39 7.80 -2.39 -0.02 0.37 16 37 H 0.05 0.44 8.14 -2.38 -0.02 0.42 16 38 H 0.09 0.45 6.17 -2.39 -0.01 0.43 16 39 H 0.07 0.62 5.97 -2.39 -0.01 0.60 16 40 H 0.14 2.27 6.01 -2.91 -0.02 2.25 16 41 H 0.12 3.38 7.66 -2.91 -0.02 3.36 16 42 H 0.10 1.94 6.74 -2.38 -0.02 1.93 16 43 H 0.10 1.93 6.73 -2.39 -0.02 1.91 16 44 H 0.10 2.46 8.14 -2.39 -0.02 2.44 16 45 H 0.08 2.28 6.09 -2.38 -0.01 2.27 16 46 H 0.00 -0.09 7.25 -2.38 -0.02 -0.10 16 47 H 0.02 0.97 7.61 -2.39 -0.02 0.96 16 48 H 0.04 1.47 6.06 -2.39 -0.01 1.45 16 49 H 0.25 14.55 8.31 -92.72 -0.77 13.78 16 50 H 0.05 2.16 7.26 -2.39 -0.02 2.14 16 51 H 0.04 1.85 7.98 -2.39 -0.02 1.83 16 52 H 0.18 3.02 2.73 -8.93 -0.02 3.00 16 53 H 0.15 1.73 5.80 -2.91 -0.02 1.72 16 Total: -1.00 -75.48 401.96 4.20 -71.28 By element: Atomic # 1 Polarization: 12.38 SS G_CDS: 0.90 Total: 13.28 kcal Atomic # 6 Polarization: 9.45 SS G_CDS: 7.93 Total: 17.38 kcal Atomic # 7 Polarization: -114.40 SS G_CDS: -6.59 Total: -120.99 kcal Atomic # 8 Polarization: -28.18 SS G_CDS: -0.07 Total: -28.25 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.29 kcal Total: -75.48 4.20 -71.28 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980550063.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.273 kcal (2) G-P(sol) polarization free energy of solvation -75.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.283 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds