Wall clock time and date at job start Wed Apr 1 2020 04:21:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47087 * 2 1 4 4 N 1.46503 * 109.46878 * 120.00000 * 2 1 3 5 5 C 1.35530 * 125.67791 * 294.23661 * 4 2 1 6 6 C 1.35458 * 108.87148 * 180.30024 * 5 4 2 7 7 C 1.39838 * 107.86291 * 359.73496 * 6 5 4 8 8 C 1.37648 * 125.67520 * 114.07878 * 4 2 1 9 9 C 1.46679 * 126.23683 * 359.96478 * 8 4 2 10 10 O 1.21692 * 119.99882 * 343.99578 * 9 8 4 11 11 N 1.34775 * 120.00258 * 163.99295 * 9 8 4 12 12 C 1.48118 * 127.84209 * 2.12679 * 11 9 8 13 13 C 1.54318 * 104.70803 * 219.78272 * 12 11 9 14 14 C 1.53003 * 112.07796 * 97.96297 * 13 12 11 15 15 C 1.54059 * 108.90988 * 223.84227 * 13 12 11 16 16 N 1.47207 * 106.25450 * 131.01845 * 15 13 12 17 17 C 1.36935 * 126.70569 * 148.60999 * 16 15 13 18 18 H 1.07999 * 119.99506 * 344.94643 * 17 16 15 19 19 C 1.38812 * 119.99800 * 164.94275 * 17 16 15 20 20 N 1.31615 * 120.00139 * 349.86045 * 19 17 16 21 21 Si 1.86803 * 119.99505 * 169.85909 * 19 17 16 22 22 H 1.48500 * 109.47457 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.46920 * 120.00160 * 21 19 17 24 24 H 1.48498 * 109.46995 * 239.99786 * 21 19 17 25 25 C 1.47207 * 106.59086 * 328.34619 * 16 15 13 26 26 C 1.53760 * 106.40533 * 31.57242 * 25 16 15 27 27 C 1.52999 * 112.06807 * 104.50637 * 26 25 16 28 28 C 1.48104 * 127.84728 * 182.12491 * 11 9 8 29 29 H 1.09002 * 109.47232 * 300.00410 * 1 2 3 30 30 H 1.09001 * 109.47011 * 59.99754 * 1 2 3 31 31 H 1.09003 * 109.47375 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.46825 * 239.99832 * 2 1 3 33 33 H 1.09002 * 109.47242 * 179.97438 * 3 2 1 34 34 H 1.08996 * 109.47420 * 299.99550 * 3 2 1 35 35 H 1.08997 * 109.47425 * 60.00199 * 3 2 1 36 36 H 1.08001 * 125.56949 * 0.02562 * 5 4 2 37 37 H 1.08001 * 126.06982 * 179.76348 * 6 5 4 38 38 H 1.08001 * 126.45367 * 179.97438 * 7 6 5 39 39 H 1.09004 * 110.38677 * 338.58541 * 12 11 9 40 40 H 1.08993 * 110.39086 * 100.86136 * 12 11 9 41 41 H 1.09005 * 109.46589 * 302.40280 * 14 13 12 42 42 H 1.08992 * 109.47510 * 62.40555 * 14 13 12 43 43 H 1.08997 * 109.47275 * 182.40811 * 14 13 12 44 44 H 1.09004 * 110.21446 * 11.79130 * 15 13 12 45 45 H 1.09004 * 110.07393 * 250.16421 * 15 13 12 46 46 H 0.97003 * 119.99456 * 180.02562 * 20 19 17 47 47 H 1.08998 * 110.06814 * 150.80194 * 25 16 15 48 48 H 1.08994 * 110.07016 * 272.33422 * 25 16 15 49 49 H 1.08998 * 109.47166 * 61.01432 * 27 26 25 50 50 H 1.09002 * 109.47118 * 181.00867 * 27 26 25 51 51 H 1.09000 * 109.47137 * 301.01082 * 27 26 25 52 52 H 1.09002 * 110.38793 * 21.41156 * 28 11 9 53 53 H 1.08996 * 110.48758 * 259.07196 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.8556 -0.2692 2.4740 6 6 2.4452 -1.1595 3.3074 7 6 2.9934 -2.1811 2.5255 8 6 2.7160 -1.8771 1.2095 9 6 3.0999 -2.6704 0.0371 10 8 2.5668 -2.4653 -1.0375 11 7 4.0431 -3.6265 0.1497 12 6 4.7674 -4.0490 1.3707 13 6 6.2182 -4.2887 0.9024 14 6 7.1212 -3.0875 1.1900 15 6 6.7356 -5.5971 1.5299 16 7 7.3272 -6.3759 0.4297 17 6 8.3806 -7.2464 0.5172 18 1 9.0154 -7.2397 1.3909 19 6 8.6324 -8.1375 -0.5169 20 7 7.7534 -8.2876 -1.4849 21 14 10.2190 -9.1234 -0.5346 22 1 11.0323 -8.7741 0.6577 23 1 9.9007 -10.5738 -0.5085 24 1 10.9847 -8.8069 -1.7669 25 6 6.5610 -6.0410 -0.7818 26 6 6.1010 -4.5832 -0.6155 27 6 6.9194 -3.6203 -1.4781 28 6 4.5907 -4.4932 -0.9191 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.3438 0.6319 2.7780 37 1 2.4844 -1.0926 4.3846 38 1 3.5328 -3.0450 2.8847 39 1 4.7364 -3.2605 2.1226 40 1 4.3379 -4.9687 1.7679 41 1 6.7129 -2.2015 0.7037 42 1 7.1721 -2.9206 2.2659 43 1 8.1217 -3.2847 0.8052 44 1 5.9114 -6.1511 1.9793 45 1 7.4933 -5.3773 2.2821 46 1 7.9293 -8.9106 -2.2074 47 1 7.1953 -6.1347 -1.6633 48 1 5.6962 -6.6982 -0.8711 49 1 6.7980 -3.8815 -2.5293 50 1 6.5710 -2.6005 -1.3146 51 1 7.9721 -3.6929 -1.2048 52 1 4.4262 -4.0403 -1.8969 53 1 4.1356 -5.4828 -0.8785 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000982808829.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:21:09 Heat of formation + Delta-G solvation = 38.583454 kcal Electronic energy + Delta-G solvation = -32292.807168 eV Core-core repulsion = 28358.778065 eV Total energy + Delta-G solvation = -3934.029103 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -42.56522 -41.54703 -39.45650 -36.85486 -36.20562 -34.46235 -33.30861 -32.36217 -30.76914 -30.50936 -28.70745 -28.24193 -27.38166 -26.89793 -26.59662 -24.38323 -23.35416 -22.44313 -21.87015 -21.28260 -19.81004 -19.23636 -18.75406 -17.94176 -17.31500 -16.92020 -16.56295 -16.23562 -15.98567 -15.93620 -15.59629 -15.31162 -14.98959 -14.91606 -14.74590 -14.56644 -14.06458 -13.74185 -13.62591 -13.57626 -13.55835 -13.40729 -13.25313 -13.13830 -13.09682 -13.01786 -12.83932 -12.71861 -12.50180 -12.30899 -12.25072 -12.09967 -12.03683 -11.81368 -11.75971 -11.41969 -11.35712 -11.12707 -10.91169 -10.66501 -9.86825 -9.63285 -9.10870 -8.81302 -7.87268 -5.21584 0.50863 1.47384 1.48521 1.52385 1.58838 1.87550 2.21838 2.32642 2.51605 3.29498 3.33883 3.45596 3.66434 3.70498 3.88941 3.93600 3.96445 4.13728 4.16706 4.18555 4.20215 4.27645 4.35769 4.45195 4.48007 4.60269 4.61303 4.66809 4.69365 4.76023 4.77990 4.80467 4.88142 4.91023 4.94679 4.96686 5.01338 5.08930 5.16233 5.17686 5.18113 5.24864 5.28582 5.33908 5.38296 5.48908 5.54912 5.60295 5.75328 5.90525 6.07777 6.23846 6.39524 6.50852 7.03684 7.09043 7.77482 8.49941 9.26174 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.023911 B = 0.002753 C = 0.002641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.711627 B =10169.229111 C =10599.756410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.103 3.897 3 C -0.152 4.152 4 N -0.406 5.406 5 C 0.027 3.973 6 C -0.216 4.216 7 C -0.150 4.150 8 C -0.080 4.080 9 C 0.600 3.400 10 O -0.592 6.592 11 N -0.602 5.602 12 C 0.100 3.900 13 C -0.071 4.071 14 C -0.113 4.113 15 C 0.140 3.860 16 N -0.614 5.614 17 C -0.235 4.235 18 H 0.082 0.918 19 C -0.062 4.062 20 N -0.946 5.946 21 Si 0.973 3.027 22 H -0.263 1.263 23 H -0.295 1.295 24 H -0.294 1.294 25 C 0.192 3.808 26 C -0.083 4.083 27 C -0.109 4.109 28 C 0.126 3.874 29 H 0.081 0.919 30 H 0.090 0.910 31 H 0.040 0.960 32 H 0.090 0.910 33 H 0.049 0.951 34 H 0.091 0.909 35 H 0.083 0.917 36 H 0.199 0.801 37 H 0.166 0.834 38 H 0.163 0.837 39 H 0.122 0.878 40 H 0.079 0.921 41 H 0.057 0.943 42 H 0.077 0.923 43 H 0.049 0.951 44 H 0.023 0.977 45 H 0.056 0.944 46 H 0.247 0.753 47 H 0.038 0.962 48 H -0.005 1.005 49 H 0.048 0.952 50 H 0.061 0.939 51 H 0.053 0.947 52 H 0.072 0.928 53 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.098 21.373 9.211 26.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.002 3.998 3 C -0.209 4.209 4 N -0.080 5.080 5 C -0.108 4.108 6 C -0.239 4.239 7 C -0.176 4.176 8 C -0.193 4.193 9 C 0.393 3.607 10 O -0.476 6.476 11 N -0.332 5.332 12 C -0.022 4.022 13 C -0.073 4.073 14 C -0.170 4.170 15 C 0.014 3.986 16 N -0.337 5.337 17 C -0.364 4.364 18 H 0.100 0.900 19 C -0.255 4.255 20 N -0.595 5.595 21 Si 0.801 3.199 22 H -0.188 1.188 23 H -0.222 1.222 24 H -0.221 1.221 25 C 0.066 3.934 26 C -0.085 4.085 27 C -0.167 4.167 28 C 0.003 3.997 29 H 0.099 0.901 30 H 0.109 0.891 31 H 0.059 0.941 32 H 0.108 0.892 33 H 0.068 0.932 34 H 0.110 0.890 35 H 0.102 0.898 36 H 0.216 0.784 37 H 0.184 0.816 38 H 0.180 0.820 39 H 0.140 0.860 40 H 0.097 0.903 41 H 0.076 0.924 42 H 0.096 0.904 43 H 0.068 0.932 44 H 0.041 0.959 45 H 0.074 0.926 46 H 0.056 0.944 47 H 0.057 0.943 48 H 0.013 0.987 49 H 0.067 0.933 50 H 0.080 0.920 51 H 0.073 0.927 52 H 0.090 0.910 53 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -12.461 21.548 8.196 26.207 hybrid contribution 0.758 -1.546 -0.780 1.890 sum -11.703 20.002 7.416 24.332 Atomic orbital electron populations 1.22078 0.92050 1.02146 1.04488 1.21909 0.96585 0.94789 0.86561 1.22115 1.01232 0.92787 1.04792 1.44350 1.39733 1.16350 1.07564 1.22510 1.04418 1.02335 0.81583 1.21180 1.05908 0.96331 1.00515 1.22073 1.03219 1.01833 0.90484 1.19791 1.11281 0.93835 0.94368 1.16976 0.78034 0.78719 0.86990 1.90707 1.55939 1.70266 1.30692 1.48598 1.37808 1.34873 1.11934 1.23257 0.89659 1.01629 0.87640 1.22254 0.95003 0.96415 0.93615 1.21569 0.98224 0.95008 1.02239 1.21663 0.96007 0.89932 0.90970 1.44722 1.35689 1.48858 1.04476 1.19394 1.02883 1.10011 1.04067 0.90027 1.25650 1.01476 0.99905 0.98512 1.70138 1.35600 1.39669 1.14053 0.85099 0.79510 0.77705 0.77543 1.18753 1.22241 1.22132 1.20959 0.93014 0.88907 0.90552 1.22316 0.93310 0.97010 0.95899 1.21513 0.99284 0.97675 0.98189 1.22385 0.92425 0.93406 0.91467 0.90054 0.89136 0.94092 0.89178 0.93174 0.89046 0.89812 0.78416 0.81646 0.82035 0.86023 0.90288 0.92427 0.90436 0.93155 0.95881 0.92604 0.94416 0.94314 0.98749 0.93306 0.92017 0.92746 0.90983 0.91829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.29 9.31 71.98 0.67 -1.62 16 2 C 0.10 2.01 3.40 44.99 0.15 2.16 16 3 C -0.15 -1.99 9.15 71.98 0.66 -1.33 16 4 N -0.41 -8.85 2.64 -488.67 -1.29 -10.14 16 5 C 0.03 0.44 10.34 83.48 0.86 1.30 16 6 C -0.22 -3.69 10.81 22.01 0.24 -3.46 16 7 C -0.15 -3.29 9.16 22.57 0.21 -3.08 16 8 C -0.08 -2.15 6.80 40.35 0.27 -1.88 16 9 C 0.60 19.78 7.83 86.45 0.68 20.46 16 10 O -0.59 -22.80 14.86 -4.32 -0.06 -22.87 16 11 N -0.60 -19.05 3.31 -813.11 -2.69 -21.74 16 12 C 0.10 2.72 5.06 86.52 0.44 3.16 16 13 C -0.07 -2.24 1.09 -50.67 -0.06 -2.29 16 14 C -0.11 -3.03 7.54 71.98 0.54 -2.49 16 15 C 0.14 5.35 6.48 86.60 0.56 5.91 16 16 N -0.61 -30.38 3.38 -694.87 -2.35 -32.73 16 17 C -0.23 -12.77 10.27 84.03 0.86 -11.90 16 18 H 0.08 4.24 7.85 -2.91 -0.02 4.22 16 19 C -0.06 -3.46 5.37 84.86 0.46 -3.00 16 20 N -0.95 -56.63 10.93 21.65 0.24 -56.39 16 21 Si 0.97 45.26 29.57 68.60 2.03 47.29 16 22 H -0.26 -11.44 7.11 99.48 0.71 -10.74 16 23 H -0.30 -13.83 7.11 99.48 0.71 -13.12 16 24 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 25 C 0.19 9.23 4.82 86.50 0.42 9.64 16 26 C -0.08 -3.05 1.08 -50.77 -0.05 -3.10 16 27 C -0.11 -3.73 7.46 71.98 0.54 -3.19 16 28 C 0.13 4.49 6.21 86.52 0.54 5.03 16 29 H 0.08 0.88 8.03 -2.39 -0.02 0.86 16 30 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.09 2.43 5.63 -2.39 -0.01 2.41 16 33 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.08 0.74 7.67 -2.39 -0.02 0.72 16 36 H 0.20 1.61 7.88 -2.91 -0.02 1.59 16 37 H 0.17 1.93 8.06 -2.91 -0.02 1.91 16 38 H 0.16 3.16 5.14 -2.91 -0.01 3.15 16 39 H 0.12 2.70 4.31 -2.39 -0.01 2.69 16 40 H 0.08 2.16 7.14 -2.39 -0.02 2.15 16 41 H 0.06 1.47 7.21 -2.38 -0.02 1.45 16 42 H 0.08 1.68 8.14 -2.39 -0.02 1.67 16 43 H 0.05 1.50 7.18 -2.39 -0.02 1.48 16 44 H 0.02 0.89 7.10 -2.39 -0.02 0.87 16 45 H 0.06 2.01 7.88 -2.38 -0.02 1.99 16 46 H 0.25 14.41 8.31 -92.71 -0.77 13.64 16 47 H 0.04 2.12 6.54 -2.39 -0.02 2.11 16 48 H -0.01 -0.28 7.10 -2.39 -0.02 -0.30 16 49 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 50 H 0.06 1.88 7.21 -2.39 -0.02 1.86 16 51 H 0.05 1.93 7.20 -2.39 -0.02 1.92 16 52 H 0.07 2.63 7.64 -2.39 -0.02 2.61 16 53 H 0.06 2.42 7.14 -2.39 -0.02 2.41 16 Total: -1.00 -71.37 399.25 4.75 -66.62 By element: Atomic # 1 Polarization: 18.75 SS G_CDS: 0.90 Total: 19.64 kcal Atomic # 6 Polarization: 2.34 SS G_CDS: 7.98 Total: 10.32 kcal Atomic # 7 Polarization: -114.91 SS G_CDS: -6.10 Total: -121.01 kcal Atomic # 8 Polarization: -22.80 SS G_CDS: -0.06 Total: -22.87 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.29 kcal Total: -71.37 4.75 -66.62 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000982808829.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.206 kcal (2) G-P(sol) polarization free energy of solvation -71.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.622 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds