Wall clock time and date at job start Wed Apr 1 2020 03:32:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53004 * 109.46839 * 2 1 4 4 C 1.53003 * 109.47310 * 119.99777 * 2 1 3 5 5 H 1.09004 * 109.46993 * 304.87666 * 4 2 1 6 6 C 1.50702 * 109.46693 * 64.86924 * 4 2 1 7 7 O 1.21280 * 119.99869 * 24.60281 * 6 4 2 8 8 N 1.34774 * 119.99813 * 204.59689 * 6 4 2 9 9 C 1.46931 * 120.63294 * 3.94052 * 8 6 4 10 10 C 1.52760 * 109.00783 * 233.58747 * 9 8 6 11 11 C 1.53042 * 109.38345 * 305.58388 * 10 9 8 12 12 N 1.46503 * 109.46112 * 181.26429 * 11 10 9 13 13 C 1.46501 * 119.99686 * 299.93478 * 12 11 10 14 14 C 1.36928 * 120.00079 * 119.93045 * 12 11 10 15 15 H 1.08004 * 120.00250 * 24.62550 * 14 12 11 16 16 C 1.38808 * 120.00382 * 204.61906 * 14 12 11 17 17 N 1.31629 * 120.00031 * 7.17975 * 16 14 12 18 18 Si 1.86802 * 120.00504 * 187.18090 * 16 14 12 19 19 H 1.48500 * 109.46974 * 0.02562 * 18 16 14 20 20 H 1.48501 * 109.47258 * 119.99808 * 18 16 14 21 21 H 1.48496 * 109.47290 * 240.00227 * 18 16 14 22 22 C 1.53038 * 109.53554 * 61.24431 * 11 10 9 23 23 C 1.46927 * 120.63051 * 184.22752 * 8 6 4 24 24 C 1.50693 * 109.47230 * 184.87151 * 4 2 1 25 25 C 1.38674 * 120.42004 * 120.00097 * 24 4 2 26 26 C 1.38627 * 118.42340 * 180.02562 * 25 24 4 27 27 C 1.38234 * 119.15949 * 359.97438 * 26 25 24 28 28 N 1.31855 * 120.76214 * 0.02562 * 27 26 25 29 29 C 1.31884 * 121.72605 * 0.02562 * 28 27 26 30 30 H 1.08996 * 109.47365 * 304.80876 * 1 2 3 31 31 H 1.08999 * 109.46882 * 64.81198 * 1 2 3 32 32 H 1.08998 * 109.46642 * 184.80997 * 1 2 3 33 33 H 1.08992 * 109.47227 * 240.00213 * 2 1 3 34 34 H 1.09001 * 109.47413 * 179.97438 * 3 2 1 35 35 H 1.08995 * 109.47241 * 300.00581 * 3 2 1 36 36 H 1.09008 * 109.46743 * 60.00123 * 3 2 1 37 37 H 1.08998 * 109.58315 * 353.42046 * 9 8 6 38 38 H 1.08997 * 109.58346 * 113.84351 * 9 8 6 39 39 H 1.09003 * 109.56079 * 185.55581 * 10 9 8 40 40 H 1.08993 * 109.36176 * 65.49840 * 10 9 8 41 41 H 1.09001 * 109.46012 * 301.22669 * 11 10 9 42 42 H 1.09007 * 109.47260 * 95.10845 * 13 12 11 43 43 H 1.08995 * 109.47230 * 215.10311 * 13 12 11 44 44 H 1.08998 * 109.47188 * 335.11150 * 13 12 11 45 45 H 0.96996 * 119.99931 * 180.02562 * 17 16 14 46 46 H 1.09003 * 109.49908 * 178.68166 * 22 11 10 47 47 H 1.09000 * 109.52379 * 58.59945 * 22 11 10 48 48 H 1.09005 * 109.58678 * 246.15593 * 23 8 6 49 49 H 1.08998 * 109.58878 * 6.43310 * 23 8 6 50 50 H 1.08000 * 120.78420 * 359.75309 * 25 24 4 51 51 H 1.08002 * 120.42322 * 179.97438 * 26 25 24 52 52 H 1.07997 * 119.61237 * 180.02562 * 27 26 25 53 53 H 1.08001 * 119.61197 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 1.2493 5 1 1.6072 -0.2602 2.1371 6 6 1.6386 -2.1726 1.1904 7 8 1.4227 -2.6991 0.1194 8 7 1.5196 -2.8855 2.3280 9 6 1.6936 -2.2411 3.6370 10 6 2.7410 -3.0139 4.4366 11 6 2.3377 -4.4884 4.5102 12 7 3.3254 -5.2255 5.3023 13 6 4.7262 -5.2636 4.8750 14 6 2.9393 -5.8789 6.4420 15 1 1.9143 -6.1979 6.5607 16 6 3.8651 -6.1313 7.4449 17 7 5.0762 -5.6218 7.3660 18 14 3.3926 -7.1941 8.9066 19 1 1.9846 -7.6422 8.7582 20 1 4.2851 -8.3795 8.9659 21 1 3.5324 -6.4061 10.1575 22 6 2.2777 -5.0736 3.0974 23 6 1.2197 -4.3231 2.2826 24 6 3.5422 -0.6176 1.3111 25 6 4.1599 -0.0038 2.3903 26 6 5.5442 0.0692 2.4044 27 6 6.2578 -0.4691 1.3499 28 7 5.6367 -1.0456 0.3398 29 6 4.3215 -1.1321 0.2925 30 1 -0.3634 0.5866 0.8437 31 1 -0.3633 0.4374 -0.9300 32 1 -0.3632 -1.0241 0.0862 33 1 1.8934 -0.5138 -0.8899 34 1 3.1300 1.4427 0.0005 35 1 1.6766 1.9564 -0.8899 36 1 1.6766 1.9563 0.8901 37 1 2.0281 -1.2133 3.4966 38 1 0.7467 -2.2489 4.1767 39 1 2.8062 -2.6039 5.4445 40 1 3.7092 -2.9256 3.9440 41 1 1.3582 -4.5739 4.9806 42 1 5.2844 -4.4814 5.3895 43 1 5.1542 -6.2358 5.1191 44 1 4.7822 -5.1018 3.7985 45 1 5.7233 -5.7985 8.0666 46 1 2.0133 -6.1296 3.1520 47 1 3.2503 -4.9664 2.6171 48 1 0.2333 -4.5042 2.7097 49 1 1.2390 -4.6679 1.2488 50 1 3.5761 0.4115 3.1985 51 1 6.0586 0.5405 3.2288 52 1 7.3365 -0.4167 1.3536 53 1 3.8482 -1.6113 -0.5517 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000985713043.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:32:55 Heat of formation + Delta-G solvation = -1.375974 kcal Electronic energy + Delta-G solvation = -32360.119355 eV Core-core repulsion = 28424.357482 eV Total energy + Delta-G solvation = -3935.761874 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -42.05134 -40.67470 -39.15796 -37.11507 -36.66244 -34.03873 -33.49225 -32.54491 -32.04544 -31.47910 -28.69850 -28.05462 -27.88310 -26.28829 -24.68987 -24.24590 -23.89636 -23.35841 -21.83419 -20.63065 -19.65142 -18.76850 -18.41258 -18.12671 -17.14982 -16.98346 -16.95127 -16.68009 -15.88856 -15.73582 -15.37052 -15.19764 -15.10316 -15.01007 -14.78403 -14.51728 -14.41206 -14.11280 -13.91561 -13.74894 -13.52658 -13.28026 -13.19894 -13.14041 -12.98737 -12.82301 -12.70130 -12.68863 -12.38507 -12.20816 -12.06715 -11.99619 -11.84806 -11.83510 -11.68640 -11.51144 -11.26897 -10.98481 -10.64151 -10.59923 -10.39947 -9.86817 -9.66071 -8.74435 -7.80290 -5.30936 0.10670 0.34064 1.46383 1.48367 1.56848 1.57947 1.99499 2.50909 2.82249 3.33398 3.43295 3.45735 3.62288 3.67949 3.73330 3.80537 3.97837 4.04800 4.07539 4.09730 4.18014 4.22136 4.28624 4.37242 4.42773 4.48432 4.58228 4.64917 4.69860 4.71798 4.78485 4.81849 4.82688 4.84488 4.89104 4.98967 5.01319 5.02365 5.08364 5.18355 5.22633 5.24865 5.26487 5.36589 5.42480 5.46846 5.48737 5.58968 5.67292 5.71265 5.75839 6.35149 6.41695 7.01233 7.13289 7.17184 7.88742 8.34797 9.22559 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.014197 B = 0.003289 C = 0.002923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1971.764383 B = 8511.875830 C = 9575.607281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.074 4.074 3 C -0.138 4.138 4 C -0.052 4.052 5 H 0.128 0.872 6 C 0.522 3.478 7 O -0.573 6.573 8 N -0.605 5.605 9 C 0.113 3.887 10 C -0.130 4.130 11 C 0.175 3.825 12 N -0.611 5.611 13 C 0.190 3.810 14 C -0.259 4.259 15 H 0.072 0.928 16 C -0.052 4.052 17 N -0.939 5.939 18 Si 0.967 3.033 19 H -0.265 1.265 20 H -0.297 1.297 21 H -0.291 1.291 22 C -0.133 4.133 23 C 0.123 3.877 24 C -0.120 4.120 25 C -0.067 4.067 26 C -0.164 4.164 27 C 0.081 3.919 28 N -0.512 5.512 29 C 0.091 3.909 30 H 0.072 0.928 31 H 0.065 0.935 32 H 0.038 0.962 33 H 0.061 0.939 34 H 0.044 0.956 35 H 0.065 0.935 36 H 0.073 0.927 37 H 0.105 0.895 38 H 0.092 0.908 39 H 0.066 0.934 40 H 0.040 0.960 41 H 0.066 0.934 42 H 0.005 0.995 43 H 0.009 0.991 44 H 0.011 0.989 45 H 0.246 0.754 46 H 0.065 0.935 47 H 0.039 0.961 48 H 0.085 0.915 49 H 0.078 0.922 50 H 0.165 0.835 51 H 0.164 0.836 52 H 0.173 0.827 53 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.197 17.509 -10.936 21.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.092 4.092 3 C -0.195 4.195 4 C -0.074 4.074 5 H 0.146 0.854 6 C 0.312 3.688 7 O -0.453 6.453 8 N -0.337 5.337 9 C -0.009 4.009 10 C -0.170 4.170 11 C 0.068 3.932 12 N -0.333 5.333 13 C 0.045 3.955 14 C -0.390 4.390 15 H 0.090 0.910 16 C -0.246 4.246 17 N -0.586 5.586 18 Si 0.796 3.204 19 H -0.190 1.190 20 H -0.224 1.224 21 H -0.218 1.218 22 C -0.173 4.173 23 C 0.000 4.000 24 C -0.123 4.123 25 C -0.092 4.092 26 C -0.183 4.183 27 C -0.076 4.076 28 N -0.221 5.221 29 C -0.066 4.066 30 H 0.091 0.909 31 H 0.084 0.916 32 H 0.058 0.942 33 H 0.079 0.921 34 H 0.063 0.937 35 H 0.084 0.916 36 H 0.092 0.908 37 H 0.123 0.877 38 H 0.110 0.890 39 H 0.085 0.915 40 H 0.058 0.942 41 H 0.084 0.916 42 H 0.023 0.977 43 H 0.028 0.972 44 H 0.030 0.970 45 H 0.055 0.945 46 H 0.084 0.916 47 H 0.057 0.943 48 H 0.103 0.897 49 H 0.096 0.904 50 H 0.183 0.817 51 H 0.181 0.819 52 H 0.190 0.810 53 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -6.695 16.835 -12.064 21.766 hybrid contribution 0.131 -0.923 1.508 1.773 sum -6.564 15.912 -10.556 20.192 Atomic orbital electron populations 1.21823 0.93880 1.01409 1.03017 1.20955 0.96613 0.96403 0.95279 1.21791 1.00417 0.94187 1.03138 1.20434 0.91854 0.91805 1.03305 0.85419 1.20820 0.75763 0.89217 0.83045 1.90652 1.52051 1.72754 1.29804 1.48233 1.69279 1.09489 1.06664 1.21884 0.99892 0.97097 0.82039 1.22160 0.98243 0.96906 0.99704 1.20502 0.92597 0.90136 0.89976 1.44134 1.04615 1.58668 1.25919 1.20338 0.85063 0.98073 0.92053 1.19603 0.95932 1.29428 0.93992 0.90983 1.25814 0.96768 1.01801 1.00250 1.70232 1.05532 1.48286 1.34579 0.85202 0.77870 0.77857 0.79513 1.18958 1.22384 1.21757 1.22273 0.98251 0.99860 0.96910 1.21506 0.98210 0.79499 1.00832 1.20355 0.94899 1.00718 0.96316 1.21866 0.95287 0.95279 0.96796 1.22481 0.94926 1.00616 1.00293 1.23243 1.01738 0.93103 0.89488 1.67669 1.11099 1.15847 1.27497 1.22567 0.89426 0.96472 0.98089 0.90860 0.91605 0.94243 0.92059 0.93687 0.91611 0.90799 0.87692 0.89030 0.91550 0.94157 0.91581 0.97708 0.97185 0.97043 0.94458 0.91649 0.94264 0.89701 0.90379 0.81714 0.81865 0.80998 0.84516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.34 9.04 71.98 0.65 -1.69 16 2 C -0.07 -1.32 1.95 -10.79 -0.02 -1.34 16 3 C -0.14 -1.89 8.88 71.98 0.64 -1.25 16 4 C -0.05 -1.00 1.19 -12.29 -0.01 -1.01 16 5 H 0.13 1.72 6.12 -2.38 -0.01 1.71 16 6 C 0.52 13.67 5.62 87.66 0.49 14.16 16 7 O -0.57 -18.75 14.72 -3.03 -0.04 -18.79 16 8 N -0.60 -15.54 2.98 -819.73 -2.44 -17.98 16 9 C 0.11 2.50 6.23 86.22 0.54 3.04 16 10 C -0.13 -4.10 5.32 30.53 0.16 -3.94 16 11 C 0.17 6.56 2.55 45.02 0.11 6.67 16 12 N -0.61 -29.75 2.81 -702.63 -1.98 -31.73 16 13 C 0.19 9.60 8.02 127.77 1.02 10.63 16 14 C -0.26 -13.84 9.59 84.03 0.81 -13.03 16 15 H 0.07 3.71 7.81 -2.91 -0.02 3.68 16 16 C -0.05 -2.83 5.21 84.86 0.44 -2.39 16 17 N -0.94 -54.87 10.50 21.65 0.23 -54.64 16 18 Si 0.97 44.32 29.56 68.60 2.03 46.35 16 19 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 20 H -0.30 -13.81 7.11 99.48 0.71 -13.10 16 21 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 22 C -0.13 -4.53 5.32 30.67 0.16 -4.37 16 23 C 0.12 3.44 6.42 86.36 0.55 4.00 16 24 C -0.12 -2.55 3.19 -19.78 -0.06 -2.61 16 25 C -0.07 -1.16 9.18 22.47 0.21 -0.95 16 26 C -0.16 -2.95 10.11 22.36 0.23 -2.72 16 27 C 0.08 1.79 11.18 84.69 0.95 2.73 16 28 N -0.51 -14.27 10.36 -195.84 -2.03 -16.30 16 29 C 0.09 2.43 10.03 84.67 0.85 3.28 16 30 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.04 0.82 6.75 -2.39 -0.02 0.81 16 33 H 0.06 1.40 7.14 -2.39 -0.02 1.38 16 34 H 0.04 0.72 7.06 -2.39 -0.02 0.71 16 35 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 36 H 0.07 0.76 8.14 -2.38 -0.02 0.74 16 37 H 0.11 1.72 4.43 -2.39 -0.01 1.70 16 38 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 39 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 40 H 0.04 1.42 7.72 -2.39 -0.02 1.40 16 41 H 0.07 2.44 7.87 -2.39 -0.02 2.42 16 42 H 0.00 0.26 7.33 -2.38 -0.02 0.24 16 43 H 0.01 0.53 7.29 -2.39 -0.02 0.51 16 44 H 0.01 0.52 6.46 -2.39 -0.02 0.50 16 45 H 0.25 14.02 8.31 -92.71 -0.77 13.25 16 46 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 47 H 0.04 1.49 6.72 -2.39 -0.02 1.47 16 48 H 0.08 2.07 8.14 -2.38 -0.02 2.05 16 49 H 0.08 2.35 7.03 -2.39 -0.02 2.34 16 50 H 0.17 1.81 7.67 -2.91 -0.02 1.79 16 51 H 0.16 2.01 8.06 -2.91 -0.02 1.98 16 52 H 0.17 2.94 8.06 -2.91 -0.02 2.91 16 53 H 0.14 3.96 7.65 -2.91 -0.02 3.94 16 Total: -1.00 -70.33 405.91 4.37 -65.96 By element: Atomic # 1 Polarization: 17.06 SS G_CDS: 0.88 Total: 17.94 kcal Atomic # 6 Polarization: 1.48 SS G_CDS: 7.72 Total: 9.20 kcal Atomic # 7 Polarization: -114.44 SS G_CDS: -6.22 Total: -120.66 kcal Atomic # 8 Polarization: -18.75 SS G_CDS: -0.04 Total: -18.79 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.35 kcal Total: -70.33 4.37 -65.96 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985713043.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.586 kcal (2) G-P(sol) polarization free energy of solvation -70.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds