Wall clock time and date at job start Wed Apr 1 2020 04:33:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.47246 * 2 1 4 4 N 1.46502 * 109.47304 * 179.97438 * 3 2 1 5 5 C 1.46500 * 119.99878 * 270.00089 * 4 3 2 6 6 C 1.39044 * 119.99938 * 90.00014 * 4 3 2 7 7 C 1.39213 * 119.93110 * 179.97438 * 6 4 3 8 8 C 1.37614 * 120.06797 * 180.02562 * 7 6 4 9 9 C 1.39792 * 119.93229 * 359.97438 * 8 7 6 10 10 C 1.47522 * 120.06729 * 179.97438 * 9 8 7 11 11 O 1.21590 * 120.00429 * 350.91365 * 10 9 8 12 12 N 1.34775 * 119.99573 * 170.91142 * 10 9 8 13 13 C 1.47426 * 125.64538 * 181.67965 * 12 10 9 14 14 C 1.54915 * 104.83144 * 204.16522 * 13 12 10 15 15 C 1.55409 * 101.66274 * 323.07052 * 14 13 12 16 16 H 1.09001 * 110.84870 * 153.70054 * 15 14 13 17 17 N 1.46491 * 110.69847 * 277.04995 * 15 14 13 18 18 C 1.36939 * 119.99942 * 268.37160 * 17 15 14 19 19 H 1.07997 * 120.00404 * 0.02562 * 18 17 15 20 20 C 1.38815 * 120.00065 * 179.97438 * 18 17 15 21 21 N 1.31611 * 120.00203 * 180.02562 * 20 18 17 22 22 Si 1.86807 * 119.99679 * 0.02562 * 20 18 17 23 23 H 1.48499 * 109.46859 * 90.00101 * 22 20 18 24 24 H 1.48507 * 109.46669 * 209.99779 * 22 20 18 25 25 H 1.48496 * 109.47161 * 329.99948 * 22 20 18 26 26 C 1.47029 * 125.65180 * 1.71798 * 12 10 9 27 27 H 1.09001 * 109.87561 * 59.33348 * 26 12 10 28 28 C 1.52999 * 109.88063 * 298.32544 * 26 12 10 29 29 C 1.39796 * 119.86274 * 0.25350 * 9 8 7 30 30 C 1.37616 * 119.92671 * 359.51081 * 29 9 8 31 31 H 1.08999 * 109.46950 * 60.00213 * 1 2 3 32 32 H 1.08996 * 109.47129 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47319 * 300.00071 * 1 2 3 34 34 H 1.08994 * 109.47386 * 240.00235 * 2 1 3 35 35 H 1.09007 * 109.47227 * 119.99697 * 2 1 3 36 36 H 1.09002 * 109.47019 * 59.99745 * 3 2 1 37 37 H 1.09000 * 109.47387 * 300.00110 * 3 2 1 38 38 H 1.09009 * 109.46999 * 270.00091 * 5 4 3 39 39 H 1.08996 * 109.47035 * 29.99689 * 5 4 3 40 40 H 1.09001 * 109.47061 * 150.00296 * 5 4 3 41 41 H 1.08005 * 119.96535 * 0.02733 * 7 6 4 42 42 H 1.08005 * 120.03190 * 179.97438 * 8 7 6 43 43 H 1.08995 * 110.36679 * 322.99892 * 13 12 10 44 44 H 1.08999 * 110.36761 * 85.32504 * 13 12 10 45 45 H 1.08993 * 111.00575 * 81.06385 * 14 13 12 46 46 H 1.08995 * 111.00172 * 204.91917 * 14 13 12 47 47 H 0.96996 * 120.00131 * 88.37009 * 17 15 14 48 48 H 0.96999 * 120.00083 * 180.02562 * 21 20 18 49 49 H 1.08997 * 109.47331 * 50.72276 * 28 26 12 50 50 H 1.09001 * 109.46864 * 290.72055 * 28 26 12 51 51 H 1.08996 * 109.46717 * 170.72905 * 28 26 12 52 52 H 1.07994 * 120.03660 * 179.74476 * 29 9 8 53 53 H 1.07997 * 119.96327 * 180.25617 * 30 29 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.2370 1.4427 1.2697 6 6 4.2007 1.4424 -1.2032 7 6 5.5929 1.4429 -1.2010 8 6 6.2843 1.4433 -2.3908 9 6 5.5873 1.4426 -3.6026 10 6 6.3254 1.4435 -4.8799 11 8 7.5297 1.6112 -4.8860 12 7 5.6649 1.2585 -6.0400 13 6 6.2794 1.2016 -7.3789 14 6 5.1432 1.5997 -8.3538 15 6 3.9082 0.9335 -7.6858 16 1 2.9924 1.4633 -7.9480 17 7 3.8164 -0.4798 -8.0604 18 6 3.0813 -0.8518 -9.1542 19 1 2.5695 -0.1034 -9.7410 20 6 2.9947 -2.1909 -9.5095 21 7 2.2886 -2.5485 -10.5611 22 14 3.8805 -3.4855 -8.4951 23 1 2.9816 -3.9700 -7.4170 24 1 4.2628 -4.6233 -9.3695 25 1 5.1013 -2.8923 -7.8925 26 6 4.2121 1.0806 -6.1800 27 1 3.6920 1.9510 -5.7801 28 6 3.7679 -0.1791 -5.4340 29 6 4.1893 1.4468 -3.6015 30 6 3.5036 1.4416 -2.4084 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 -0.3634 0.5138 0.8900 34 1 1.8933 -0.5138 -0.8899 35 1 1.8933 -0.5138 0.8901 36 1 1.6766 1.9564 0.8900 37 1 1.6767 1.9564 -0.8900 38 1 4.4185 2.4705 1.5843 39 1 3.6475 0.9291 2.0291 40 1 5.1895 0.9289 1.1398 41 1 6.1308 1.4430 -0.2645 42 1 7.3643 1.4441 -2.3884 43 1 7.1043 1.9107 -7.4481 44 1 6.6273 0.1913 -7.5940 45 1 5.0256 2.6825 -8.3956 46 1 5.3195 1.1887 -9.3478 47 1 4.2764 -1.1520 -7.5337 48 1 2.2278 -3.4843 -10.8091 49 1 4.1614 -0.1574 -4.4177 50 1 4.1467 -1.0605 -5.9515 51 1 2.6791 -0.2170 -5.4014 52 1 3.6480 1.4505 -4.5360 53 1 2.4237 1.4407 -2.4069 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000987604676.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:33:22 Heat of formation + Delta-G solvation = 48.208752 kcal Electronic energy + Delta-G solvation = -31428.060001 eV Core-core repulsion = 27494.448282 eV Total energy + Delta-G solvation = -3933.611719 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -42.02496 -40.33405 -39.01968 -37.61010 -35.88901 -34.59697 -33.49504 -33.30839 -31.84328 -30.96728 -30.31576 -28.40571 -27.17375 -26.12838 -25.22926 -24.20907 -23.16247 -22.78214 -21.58570 -21.36344 -20.41627 -19.92749 -18.46563 -18.11952 -17.48488 -16.82847 -16.54274 -16.36691 -16.25928 -15.79382 -15.65437 -15.47658 -15.11204 -14.81823 -14.80527 -14.62461 -14.39304 -14.10520 -13.98203 -13.87488 -13.62331 -13.35319 -13.20125 -13.12594 -13.04727 -12.88346 -12.76525 -12.55754 -12.47075 -12.35253 -12.25611 -12.11992 -11.98596 -11.79537 -11.66139 -11.58759 -11.38389 -10.96812 -10.92668 -10.69010 -9.75919 -9.70685 -9.29771 -8.25763 -8.00491 -5.32178 0.09955 0.51940 1.35774 1.37398 1.42983 1.89161 2.00774 2.14940 2.47068 2.97593 3.28587 3.47104 3.50068 3.68304 3.81083 3.88966 3.96556 4.06487 4.10852 4.12424 4.20240 4.27701 4.29556 4.38005 4.45714 4.47397 4.52175 4.60081 4.66331 4.68566 4.75432 4.76157 4.81046 4.89282 4.91580 4.95861 4.99970 5.12106 5.14782 5.20710 5.22421 5.26936 5.27278 5.29519 5.36624 5.39904 5.46018 5.59515 5.78443 5.82757 6.23999 6.30314 6.47243 6.54618 7.09339 7.15733 7.85296 8.02289 9.20879 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.010592 B = 0.003297 C = 0.002751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2642.950544 B = 8490.006013 C =10174.014702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.140 4.140 3 C 0.116 3.884 4 N -0.624 5.624 5 C 0.082 3.918 6 C 0.246 3.754 7 C -0.219 4.219 8 C -0.017 4.017 9 C -0.228 4.228 10 C 0.573 3.427 11 O -0.596 6.596 12 N -0.607 5.607 13 C 0.111 3.889 14 C -0.147 4.147 15 C 0.169 3.831 16 H 0.093 0.907 17 N -0.741 5.741 18 C -0.217 4.217 19 H 0.071 0.929 20 C -0.055 4.055 21 N -0.980 5.980 22 Si 0.935 3.065 23 H -0.275 1.275 24 H -0.300 1.300 25 H -0.267 1.267 26 C 0.114 3.886 27 H 0.123 0.877 28 C -0.179 4.179 29 C -0.055 4.055 30 C -0.220 4.220 31 H 0.058 0.942 32 H 0.053 0.947 33 H 0.066 0.934 34 H 0.050 0.950 35 H 0.062 0.938 36 H 0.094 0.906 37 H 0.081 0.919 38 H 0.059 0.941 39 H 0.083 0.917 40 H 0.071 0.929 41 H 0.145 0.855 42 H 0.121 0.879 43 H 0.074 0.926 44 H 0.045 0.955 45 H 0.094 0.906 46 H 0.073 0.927 47 H 0.365 0.635 48 H 0.256 0.744 49 H 0.085 0.915 50 H 0.039 0.961 51 H 0.090 0.910 52 H 0.173 0.827 53 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.375 11.235 27.401 29.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.179 4.179 3 C -0.006 4.006 4 N -0.330 5.330 5 C -0.060 4.060 6 C 0.140 3.860 7 C -0.242 4.242 8 C -0.037 4.037 9 C -0.233 4.233 10 C 0.366 3.634 11 O -0.480 6.480 12 N -0.339 5.339 13 C -0.011 4.011 14 C -0.188 4.188 15 C 0.059 3.941 16 H 0.111 0.889 17 N -0.385 5.385 18 C -0.348 4.348 19 H 0.089 0.911 20 C -0.246 4.246 21 N -0.631 5.631 22 Si 0.764 3.236 23 H -0.201 1.201 24 H -0.227 1.227 25 H -0.193 1.193 26 C 0.011 3.989 27 H 0.140 0.860 28 C -0.236 4.236 29 C -0.073 4.073 30 C -0.242 4.242 31 H 0.077 0.923 32 H 0.072 0.928 33 H 0.085 0.915 34 H 0.068 0.932 35 H 0.081 0.919 36 H 0.112 0.888 37 H 0.100 0.900 38 H 0.078 0.922 39 H 0.102 0.898 40 H 0.090 0.910 41 H 0.163 0.837 42 H 0.139 0.861 43 H 0.092 0.908 44 H 0.063 0.937 45 H 0.113 0.887 46 H 0.092 0.908 47 H 0.201 0.799 48 H 0.065 0.935 49 H 0.103 0.897 50 H 0.058 0.942 51 H 0.109 0.891 52 H 0.189 0.811 53 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -0.967 11.340 27.498 29.760 hybrid contribution 0.889 -1.498 -0.191 1.752 sum -0.079 9.842 27.307 29.027 Atomic orbital electron populations 1.21694 0.94308 1.02138 1.02584 1.21917 0.96749 0.97260 1.01944 1.21725 0.78006 0.96832 1.04069 1.46699 1.05778 1.77368 1.03196 1.21873 0.97589 1.02199 0.84321 1.18194 0.91260 0.89763 0.86773 1.20714 0.92338 1.12713 0.98399 1.20972 0.99813 0.92031 0.90924 1.19449 0.94359 1.17537 0.91973 1.18354 0.86125 0.75286 0.83598 1.90689 1.15989 1.53638 1.87638 1.48534 1.08680 1.70644 1.06055 1.22120 0.97072 1.00342 0.81577 1.23431 0.95512 1.01450 0.98392 1.21483 0.97422 0.84703 0.90464 0.88868 1.43005 1.59672 1.03553 1.32266 1.19061 1.20874 0.92341 1.02540 0.91104 1.25257 1.01499 0.98901 0.98981 1.69832 1.47154 1.16569 1.29523 0.85725 0.79267 0.79927 0.78651 1.20135 1.22697 1.19278 1.22452 0.80310 0.99199 0.96965 0.85997 1.22827 1.03382 0.96921 1.00515 1.22703 0.92963 0.90596 1.01068 1.20828 1.00722 1.12377 0.90275 0.92264 0.92812 0.91502 0.93161 0.91919 0.88768 0.90050 0.92208 0.89791 0.91042 0.83731 0.86114 0.90784 0.93685 0.88734 0.90807 0.79915 0.93490 0.89704 0.94191 0.89125 0.81105 0.83659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 9.91 71.98 0.71 -0.66 16 2 C -0.14 -1.53 6.26 30.59 0.19 -1.34 16 3 C 0.12 1.15 5.14 86.38 0.44 1.59 16 4 N -0.62 -8.22 2.99 -722.19 -2.16 -10.38 16 5 C 0.08 0.71 10.17 127.77 1.30 2.01 16 6 C 0.25 4.58 6.55 38.47 0.25 4.83 16 7 C -0.22 -4.44 9.18 22.36 0.21 -4.24 16 8 C -0.02 -0.45 9.58 22.50 0.22 -0.24 16 9 C -0.23 -6.47 5.33 -20.08 -0.11 -6.58 16 10 C 0.57 19.76 7.64 86.69 0.66 20.42 16 11 O -0.60 -24.50 16.62 -4.00 -0.07 -24.56 16 12 N -0.61 -19.43 3.06 -797.94 -2.45 -21.87 16 13 C 0.11 3.69 6.90 86.86 0.60 4.29 16 14 C -0.15 -4.56 6.77 32.08 0.22 -4.35 16 15 C 0.17 5.58 3.50 46.27 0.16 5.74 16 16 H 0.09 2.93 8.09 -2.39 -0.02 2.91 16 17 N -0.74 -31.70 4.35 -316.93 -1.38 -33.08 16 18 C -0.22 -11.46 10.44 84.03 0.88 -10.59 16 19 H 0.07 4.02 8.06 -2.91 -0.02 3.99 16 20 C -0.05 -3.10 5.50 84.86 0.47 -2.64 16 21 N -0.98 -60.96 13.97 21.65 0.30 -60.65 16 22 Si 0.94 45.25 27.74 68.60 1.90 47.15 16 23 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 24 H -0.30 -14.92 7.11 99.48 0.71 -14.21 16 25 H -0.27 -12.28 6.52 99.48 0.65 -11.63 16 26 C 0.11 3.18 2.69 45.34 0.12 3.30 16 27 H 0.12 2.66 6.21 -2.39 -0.01 2.65 16 28 C -0.18 -5.11 7.46 71.98 0.54 -4.57 16 29 C -0.06 -1.27 6.16 22.50 0.14 -1.13 16 30 C -0.22 -4.24 9.18 22.36 0.21 -4.04 16 31 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 33 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 34 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.06 0.68 8.14 -2.38 -0.02 0.66 16 36 H 0.09 0.60 8.07 -2.39 -0.02 0.58 16 37 H 0.08 0.81 6.17 -2.39 -0.01 0.79 16 38 H 0.06 0.44 8.14 -2.38 -0.02 0.42 16 39 H 0.08 0.46 8.07 -2.39 -0.02 0.44 16 40 H 0.07 0.63 6.17 -2.39 -0.01 0.62 16 41 H 0.15 2.24 6.11 -2.91 -0.02 2.22 16 42 H 0.12 3.26 7.67 -2.91 -0.02 3.24 16 43 H 0.07 2.39 8.02 -2.39 -0.02 2.38 16 44 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 45 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 46 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 47 H 0.36 15.91 3.35 -92.71 -0.31 15.60 16 48 H 0.26 15.36 8.31 -92.71 -0.77 14.59 16 49 H 0.08 2.29 4.18 -2.76 -0.01 2.28 16 50 H 0.04 1.38 5.63 -2.39 -0.01 1.36 16 51 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 52 H 0.17 3.68 2.17 -5.40 -0.01 3.67 16 53 H 0.15 2.21 6.11 -2.91 -0.02 2.19 16 Total: -1.00 -71.79 401.66 3.91 -67.89 By element: Atomic # 1 Polarization: 33.14 SS G_CDS: 0.55 Total: 33.69 kcal Atomic # 6 Polarization: -5.38 SS G_CDS: 7.20 Total: 1.82 kcal Atomic # 7 Polarization: -120.30 SS G_CDS: -5.68 Total: -125.98 kcal Atomic # 8 Polarization: -24.50 SS G_CDS: -0.07 Total: -24.56 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 1.90 Total: 47.15 kcal Total: -71.79 3.91 -67.89 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987604676.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.096 kcal (2) G-P(sol) polarization free energy of solvation -71.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.887 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds