Wall clock time and date at job start Wed Apr 1 2020 04:33:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53003 * 109.47396 * 2 1 4 4 N 1.46494 * 109.47388 * 180.02562 * 3 2 1 5 5 C 1.46496 * 119.99990 * 90.00433 * 4 3 2 6 6 C 1.39048 * 120.00242 * 269.99995 * 4 3 2 7 7 C 1.39223 * 119.92980 * 359.72742 * 6 4 3 8 8 C 1.37608 * 120.07087 * 179.71766 * 7 6 4 9 9 C 1.39798 * 119.92431 * 0.57717 * 8 7 6 10 10 C 1.47528 * 120.06526 * 179.72154 * 9 8 7 11 11 O 1.21594 * 119.99749 * 332.51988 * 10 9 8 12 12 N 1.34779 * 119.99772 * 152.52304 * 10 9 8 13 13 C 1.47419 * 125.65044 * 3.66763 * 12 10 9 14 14 C 1.54912 * 104.83028 * 204.09393 * 13 12 10 15 15 H 1.09007 * 110.99986 * 204.91640 * 14 13 12 16 16 N 1.46496 * 111.00386 * 81.10437 * 14 13 12 17 17 C 1.36941 * 120.00182 * 86.45205 * 16 14 13 18 18 H 1.07998 * 119.99828 * 359.97438 * 17 16 14 19 19 C 1.38807 * 120.00095 * 180.02562 * 17 16 14 20 20 N 1.31618 * 120.00086 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 120.00243 * 180.02562 * 19 17 16 22 22 H 1.48508 * 109.46938 * 59.99414 * 21 19 17 23 23 H 1.48489 * 109.47592 * 179.97438 * 21 19 17 24 24 H 1.48504 * 109.46809 * 300.00241 * 21 19 17 25 25 C 1.55149 * 101.58299 * 322.98834 * 14 13 12 26 26 C 1.47025 * 125.64284 * 183.36208 * 12 10 9 27 27 H 1.08996 * 109.88241 * 59.55803 * 26 12 10 28 28 C 1.52999 * 109.87964 * 298.39259 * 26 12 10 29 29 C 1.39797 * 119.86676 * 359.69771 * 9 8 7 30 30 C 1.37609 * 119.92831 * 0.02562 * 29 9 8 31 31 H 1.09005 * 109.47443 * 59.99708 * 1 2 3 32 32 H 1.09000 * 109.47467 * 179.97438 * 1 2 3 33 33 H 1.09005 * 109.46872 * 299.99826 * 1 2 3 34 34 H 1.09001 * 109.47444 * 240.00628 * 2 1 3 35 35 H 1.08998 * 109.47566 * 119.99883 * 2 1 3 36 36 H 1.09005 * 109.46968 * 60.00233 * 3 2 1 37 37 H 1.09005 * 109.47063 * 300.00525 * 3 2 1 38 38 H 1.09003 * 109.46999 * 269.99812 * 5 4 3 39 39 H 1.09004 * 109.47625 * 150.00012 * 5 4 3 40 40 H 1.09005 * 109.47129 * 29.99970 * 5 4 3 41 41 H 1.08005 * 119.96097 * 359.97438 * 7 6 4 42 42 H 1.07997 * 120.03807 * 180.27570 * 8 7 6 43 43 H 1.09001 * 110.36608 * 322.93153 * 13 12 10 44 44 H 1.08996 * 110.36618 * 85.14401 * 13 12 10 45 45 H 0.96996 * 120.00442 * 266.45250 * 16 14 13 46 46 H 0.96999 * 120.00143 * 179.97438 * 20 19 17 47 47 H 1.08999 * 110.72107 * 153.86212 * 25 14 13 48 48 H 1.09000 * 110.72367 * 276.96290 * 25 14 13 49 49 H 1.08994 * 109.47517 * 61.45761 * 28 26 12 50 50 H 1.09003 * 109.46581 * 181.45678 * 28 26 12 51 51 H 1.08999 * 109.47099 * 301.45318 * 28 26 12 52 52 H 1.07993 * 120.03379 * 180.02562 * 29 9 8 53 53 H 1.08002 * 119.96112 * 179.97438 * 30 29 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4425 -0.0006 5 6 4.2369 1.4428 -1.2696 6 6 4.2007 1.4423 1.2032 7 6 3.5037 1.4479 2.4084 8 6 4.1893 1.4419 3.6015 9 6 5.5873 1.4423 3.6025 10 6 6.3255 1.4421 4.8798 11 8 5.8206 1.9274 5.8738 12 7 7.5595 0.9039 4.9449 13 6 8.3179 0.3535 3.8068 14 6 9.3123 -0.6506 4.4415 15 1 10.1871 -0.7886 3.8060 16 7 8.6595 -1.9327 4.7173 17 6 8.5913 -2.8904 3.7409 18 1 9.0183 -2.7003 2.7673 19 6 7.9723 -4.1051 4.0021 20 7 7.4514 -4.3366 5.1885 21 14 7.8799 -5.4118 2.6704 22 1 9.2537 -5.7915 2.2532 23 1 7.1751 -6.6075 3.1981 24 1 7.1381 -4.8752 1.5011 25 6 9.6910 0.0764 5.7587 26 6 8.3746 0.7744 6.1616 27 1 7.8468 0.1692 6.8987 28 6 8.6723 2.1599 6.7384 29 6 6.2843 1.4425 2.3907 30 6 5.5929 1.4428 1.2010 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 -0.3633 0.5138 0.8901 34 1 1.8933 -0.5137 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 1.6767 1.9563 0.8901 37 1 1.6766 1.9564 -0.8900 38 1 4.4184 0.4152 -1.5846 39 1 5.1894 1.9566 -1.1397 40 1 3.6475 1.9568 -2.0289 41 1 2.4237 1.4527 2.4069 42 1 3.6481 1.4417 4.5361 43 1 7.6479 -0.1604 3.1175 44 1 8.8563 1.1479 3.2901 45 1 8.2756 -2.1034 5.5916 46 1 7.0186 -5.1853 5.3709 47 1 9.9987 -0.6403 6.5201 48 1 10.4771 0.8105 5.5819 49 1 7.7369 2.6496 7.0086 50 1 9.2982 2.0574 7.6249 51 1 9.1942 2.7594 5.9925 52 1 7.3643 1.4425 2.3883 53 1 6.1308 1.4434 0.2645 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989856410.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:33:46 Heat of formation + Delta-G solvation = 0.569918 kcal Electronic energy + Delta-G solvation = -31186.741863 eV Core-core repulsion = 27251.064370 eV Total energy + Delta-G solvation = -3935.677493 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.55091 -40.35143 -38.73195 -37.47347 -35.77035 -34.41373 -33.34147 -33.03502 -31.79785 -30.65084 -30.09047 -28.41351 -26.96130 -26.25964 -25.67786 -23.94234 -23.47564 -22.58996 -21.57918 -21.40698 -20.27812 -19.23358 -18.44510 -18.01906 -17.49550 -16.89874 -16.49731 -16.15035 -15.94449 -15.66821 -15.46738 -15.43466 -15.14478 -14.96490 -14.75263 -14.68318 -14.36885 -14.12920 -13.86366 -13.54270 -13.45387 -13.28098 -13.21733 -13.09476 -13.06530 -12.83274 -12.81048 -12.66827 -12.62307 -12.27809 -12.25173 -12.20288 -12.01000 -11.70907 -11.61989 -11.53383 -11.48436 -11.00510 -10.84713 -10.68726 -9.94918 -9.61449 -8.94644 -8.25890 -7.91272 -5.19752 0.16309 0.49297 1.47425 1.50125 1.55716 1.87571 2.11659 2.19311 2.57576 2.96289 3.39452 3.56156 3.75830 3.88533 3.89156 3.93671 3.98326 4.05345 4.08011 4.14997 4.25903 4.36567 4.40718 4.44487 4.45317 4.50720 4.59036 4.65852 4.67945 4.71171 4.73440 4.76590 4.79299 4.89022 4.93575 4.95863 5.05216 5.11353 5.17253 5.18374 5.19994 5.23511 5.25039 5.32695 5.37814 5.40739 5.49015 5.56726 5.63895 5.77389 6.29355 6.30670 6.46037 6.65072 7.24411 7.35952 8.11486 8.33502 9.32295 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.007695 B = 0.003872 C = 0.002924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3638.055538 B = 7229.276252 C = 9573.368869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.143 4.143 3 C 0.118 3.882 4 N -0.625 5.625 5 C 0.083 3.917 6 C 0.239 3.761 7 C -0.212 4.212 8 C -0.030 4.030 9 C -0.216 4.216 10 C 0.569 3.431 11 O -0.595 6.595 12 N -0.597 5.597 13 C 0.072 3.928 14 C 0.155 3.845 15 H 0.090 0.910 16 N -0.726 5.726 17 C -0.233 4.233 18 H 0.086 0.914 19 C -0.075 4.075 20 N -0.972 5.972 21 Si 0.967 3.033 22 H -0.272 1.272 23 H -0.303 1.303 24 H -0.280 1.280 25 C -0.121 4.121 26 C 0.133 3.867 27 H 0.037 0.963 28 C -0.147 4.147 29 C -0.043 4.043 30 C -0.211 4.211 31 H 0.070 0.930 32 H 0.053 0.947 33 H 0.058 0.942 34 H 0.061 0.939 35 H 0.041 0.959 36 H 0.077 0.923 37 H 0.100 0.900 38 H 0.048 0.952 39 H 0.077 0.923 40 H 0.091 0.909 41 H 0.142 0.858 42 H 0.115 0.885 43 H 0.068 0.932 44 H 0.098 0.902 45 H 0.369 0.631 46 H 0.247 0.753 47 H 0.076 0.924 48 H 0.115 0.885 49 H 0.041 0.959 50 H 0.083 0.917 51 H 0.070 0.930 52 H 0.149 0.851 53 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.188 16.127 -14.289 22.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.182 4.182 3 C -0.005 4.005 4 N -0.333 5.333 5 C -0.059 4.059 6 C 0.133 3.867 7 C -0.234 4.234 8 C -0.050 4.050 9 C -0.221 4.221 10 C 0.361 3.639 11 O -0.479 6.479 12 N -0.328 5.328 13 C -0.053 4.053 14 C 0.045 3.955 15 H 0.107 0.893 16 N -0.364 5.364 17 C -0.365 4.365 18 H 0.104 0.896 19 C -0.267 4.267 20 N -0.623 5.623 21 Si 0.796 3.204 22 H -0.198 1.198 23 H -0.230 1.230 24 H -0.207 1.207 25 C -0.159 4.159 26 C 0.029 3.971 27 H 0.055 0.945 28 C -0.205 4.205 29 C -0.062 4.062 30 C -0.233 4.233 31 H 0.089 0.911 32 H 0.072 0.928 33 H 0.077 0.923 34 H 0.080 0.920 35 H 0.060 0.940 36 H 0.095 0.905 37 H 0.118 0.882 38 H 0.067 0.933 39 H 0.096 0.904 40 H 0.109 0.891 41 H 0.159 0.841 42 H 0.133 0.867 43 H 0.087 0.913 44 H 0.116 0.884 45 H 0.200 0.800 46 H 0.056 0.944 47 H 0.095 0.905 48 H 0.133 0.867 49 H 0.060 0.940 50 H 0.101 0.899 51 H 0.089 0.911 52 H 0.166 0.834 53 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -5.562 16.308 -14.158 22.301 hybrid contribution -0.662 -1.417 0.371 1.608 sum -6.224 14.891 -13.787 21.226 Atomic orbital electron populations 1.21679 0.93914 1.02161 1.02681 1.21939 0.97110 0.97539 1.01596 1.21722 0.78133 0.96569 1.04030 1.46653 1.05740 1.77779 1.03123 1.21892 0.97963 1.01858 0.84152 1.18108 0.91556 0.90517 0.86500 1.20687 1.00387 1.11967 0.90341 1.20929 0.92528 0.93261 0.98295 1.19595 0.94451 1.15261 0.92767 1.18308 0.79944 0.77018 0.88609 1.90655 1.68885 1.49416 1.38910 1.48364 1.15155 1.58372 1.10866 1.23618 0.95424 0.96997 0.89269 1.21708 0.93853 0.84368 0.95548 0.89277 1.42527 1.67822 1.12624 1.13431 1.19626 1.28962 0.93829 0.94092 0.89638 1.25514 1.01969 1.00597 0.98665 1.69833 1.44907 1.24699 1.22858 0.85305 0.77839 0.78562 0.78644 1.19820 1.23015 1.20658 1.22974 0.95544 0.99560 0.97847 1.21558 0.91697 0.97220 0.86575 0.94492 1.22024 1.01546 0.95184 1.01731 1.21703 1.01142 0.92624 0.90732 1.20863 0.92191 1.11311 0.98952 0.91080 0.92811 0.92311 0.91974 0.94022 0.90456 0.88173 0.93308 0.90444 0.89075 0.84074 0.86679 0.91349 0.88444 0.80000 0.94407 0.90504 0.86659 0.93990 0.89861 0.91079 0.83362 0.83085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.86 9.91 71.98 0.71 -1.14 16 2 C -0.14 -2.33 6.26 30.59 0.19 -2.14 16 3 C 0.12 1.71 5.19 86.38 0.45 2.16 16 4 N -0.63 -11.51 2.99 -722.20 -2.16 -13.67 16 5 C 0.08 1.08 10.22 127.77 1.31 2.38 16 6 C 0.24 5.96 6.55 38.47 0.25 6.21 16 7 C -0.21 -5.85 9.18 22.36 0.21 -5.65 16 8 C -0.03 -1.03 9.58 22.50 0.22 -0.81 16 9 C -0.22 -7.77 5.70 -20.07 -0.11 -7.89 16 10 C 0.57 23.23 7.44 86.69 0.65 23.88 16 11 O -0.60 -27.59 15.57 -4.01 -0.06 -27.65 16 12 N -0.60 -21.95 3.06 -791.75 -2.43 -24.37 16 13 C 0.07 2.35 4.71 86.86 0.41 2.75 16 14 C 0.16 5.49 3.69 46.38 0.17 5.66 16 15 H 0.09 2.85 8.13 -2.38 -0.02 2.83 16 16 N -0.73 -35.13 5.27 -316.38 -1.67 -36.80 16 17 C -0.23 -12.38 9.98 84.03 0.84 -11.54 16 18 H 0.09 4.20 7.83 -2.91 -0.02 4.18 16 19 C -0.08 -4.29 5.50 84.86 0.47 -3.82 16 20 N -0.97 -60.34 13.06 21.65 0.28 -60.06 16 21 Si 0.97 45.76 29.55 68.60 2.03 47.79 16 22 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 23 H -0.30 -14.82 7.11 99.48 0.71 -14.12 16 24 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 25 C -0.12 -3.57 6.05 31.79 0.19 -3.38 16 26 C 0.13 4.54 3.47 45.35 0.16 4.70 16 27 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 28 C -0.15 -4.20 9.11 71.98 0.66 -3.54 16 29 C -0.04 -1.28 7.91 22.50 0.18 -1.10 16 30 C -0.21 -5.34 9.18 22.36 0.21 -5.13 16 31 H 0.07 0.67 8.14 -2.38 -0.02 0.65 16 32 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.06 0.72 8.14 -2.38 -0.02 0.70 16 34 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.08 1.14 6.16 -2.38 -0.01 1.13 16 37 H 0.10 0.95 7.89 -2.38 -0.02 0.93 16 38 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 39 H 0.08 0.92 6.17 -2.38 -0.01 0.90 16 40 H 0.09 0.73 7.89 -2.38 -0.02 0.71 16 41 H 0.14 3.26 6.11 -2.91 -0.02 3.24 16 42 H 0.12 4.05 7.88 -2.91 -0.02 4.03 16 43 H 0.07 2.55 6.17 -2.39 -0.01 2.54 16 44 H 0.10 2.39 7.27 -2.39 -0.02 2.37 16 45 H 0.37 20.17 7.82 -92.71 -0.72 19.45 16 46 H 0.25 15.09 8.31 -92.71 -0.77 14.32 16 47 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 48 H 0.12 2.50 7.85 -2.39 -0.02 2.48 16 49 H 0.04 1.42 6.77 -2.39 -0.02 1.41 16 50 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 51 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 52 H 0.15 3.91 4.56 -2.91 -0.01 3.89 16 53 H 0.15 2.93 6.11 -2.91 -0.02 2.91 16 Total: -1.00 -74.68 414.82 3.32 -71.36 By element: Atomic # 1 Polarization: 41.61 SS G_CDS: 0.18 Total: 41.79 kcal Atomic # 6 Polarization: -5.54 SS G_CDS: 7.14 Total: 1.60 kcal Atomic # 7 Polarization: -128.93 SS G_CDS: -5.97 Total: -134.90 kcal Atomic # 8 Polarization: -27.59 SS G_CDS: -0.06 Total: -27.65 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 2.03 Total: 47.79 kcal Total: -74.68 3.32 -71.36 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989856410.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.933 kcal (2) G-P(sol) polarization free energy of solvation -74.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.363 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds