Wall clock time and date at job start Wed Apr 1 2020 04:33:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53006 * 109.47270 * 2 1 4 4 N 1.46492 * 109.47056 * 179.97438 * 3 2 1 5 5 C 1.46507 * 120.00505 * 269.99897 * 4 3 2 6 6 C 1.39057 * 119.99837 * 90.00128 * 4 3 2 7 7 C 1.39214 * 119.92882 * 179.97438 * 6 4 3 8 8 C 1.37611 * 120.06694 * 180.02562 * 7 6 4 9 9 C 1.39794 * 119.93135 * 359.97438 * 8 7 6 10 10 C 1.47522 * 120.06908 * 179.97438 * 9 8 7 11 11 O 1.21589 * 120.00312 * 33.49483 * 10 9 8 12 12 N 1.34776 * 119.99446 * 213.49786 * 10 9 8 13 13 C 1.47422 * 125.65545 * 356.17312 * 12 10 9 14 14 C 1.55132 * 104.72612 * 155.81589 * 13 12 10 15 15 H 1.08999 * 111.22672 * 279.18227 * 14 13 12 16 16 N 1.46499 * 110.90454 * 155.27447 * 14 13 12 17 17 C 1.36942 * 119.99245 * 92.97906 * 16 14 13 18 18 H 1.07994 * 120.00483 * 0.02562 * 17 16 14 19 19 C 1.38822 * 119.99451 * 179.97438 * 17 16 14 20 20 N 1.31621 * 120.00080 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 119.99746 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.47232 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.46805 * 120.00082 * 21 19 17 24 24 H 1.48497 * 109.47454 * 240.00051 * 21 19 17 25 25 C 1.55161 * 101.48266 * 37.30108 * 14 13 12 26 26 C 1.47029 * 125.64283 * 176.48323 * 12 10 9 27 27 H 1.08999 * 109.88537 * 300.43933 * 26 12 10 28 28 C 1.53005 * 109.88249 * 61.60772 * 26 12 10 29 29 C 1.39794 * 119.86316 * 0.24901 * 9 8 7 30 30 C 1.37610 * 119.92787 * 359.51347 * 29 9 8 31 31 H 1.08998 * 109.46767 * 300.00045 * 1 2 3 32 32 H 1.08998 * 109.47192 * 59.99850 * 1 2 3 33 33 H 1.09001 * 109.46769 * 180.02562 * 1 2 3 34 34 H 1.09000 * 109.47418 * 240.00308 * 2 1 3 35 35 H 1.08998 * 109.47192 * 120.00150 * 2 1 3 36 36 H 1.09000 * 109.46649 * 59.99837 * 3 2 1 37 37 H 1.08998 * 109.47135 * 300.00185 * 3 2 1 38 38 H 1.08999 * 109.46984 * 270.00256 * 5 4 3 39 39 H 1.09002 * 109.46528 * 30.00432 * 5 4 3 40 40 H 1.08997 * 109.46787 * 149.99986 * 5 4 3 41 41 H 1.07999 * 119.97130 * 0.02734 * 7 6 4 42 42 H 1.08003 * 120.03606 * 179.97438 * 8 7 6 43 43 H 1.09003 * 110.37062 * 274.75257 * 13 12 10 44 44 H 1.09008 * 110.36088 * 37.07380 * 13 12 10 45 45 H 0.96994 * 120.00609 * 272.98091 * 16 14 13 46 46 H 0.96998 * 119.99856 * 180.02562 * 20 19 17 47 47 H 1.08996 * 110.71901 * 205.97076 * 25 14 13 48 48 H 1.08994 * 110.87005 * 82.76452 * 25 14 13 49 49 H 1.09001 * 109.47287 * 58.54274 * 28 26 12 50 50 H 1.08997 * 109.46590 * 178.54079 * 28 26 12 51 51 H 1.08994 * 109.46966 * 298.54329 * 28 26 12 52 52 H 1.07995 * 120.04172 * 179.75284 * 29 9 8 53 53 H 1.07999 * 119.96910 * 180.20772 * 30 29 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.2371 1.4427 1.2697 6 6 4.2008 1.4423 -1.2034 7 6 5.5929 1.4428 -1.2011 8 6 6.2843 1.4432 -2.3909 9 6 5.5873 1.4425 -3.6027 10 6 6.3254 1.4434 -4.8800 11 8 7.3905 0.8636 -4.9671 12 7 5.8190 2.0872 -5.9503 13 6 4.5083 2.7596 -6.0079 14 6 4.6577 3.8192 -7.1310 15 1 5.1636 4.7129 -6.7657 16 7 3.3541 4.1561 -7.7086 17 6 2.6420 5.2181 -7.2183 18 1 3.0415 5.8074 -6.4062 19 6 1.4070 5.5377 -7.7658 20 7 0.9204 4.8197 -8.7558 21 14 0.4353 6.9858 -7.0966 22 1 1.1958 7.6244 -5.9924 23 1 0.2125 7.9758 -8.1809 24 1 -0.8747 6.5090 -6.5850 25 6 5.5407 3.0600 -8.1564 26 6 6.4797 2.2297 -7.2560 27 1 7.4313 2.7474 -7.1355 28 6 6.7094 0.8500 -7.8763 29 6 4.1893 1.4467 -3.6016 30 6 3.5037 1.4414 -2.4085 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 -0.3633 -1.0277 0.0005 34 1 1.8934 -0.5138 -0.8900 35 1 1.8934 -0.5138 0.8899 36 1 1.6767 1.9563 0.8900 37 1 1.6767 1.9564 -0.8899 38 1 4.4187 2.4704 1.5842 39 1 3.6477 0.9289 2.0291 40 1 5.1895 0.9288 1.1397 41 1 6.1309 1.4429 -0.2647 42 1 7.3643 1.4440 -2.3886 43 1 3.7255 2.0440 -6.2598 44 1 4.2886 3.2443 -5.0565 45 1 2.9955 3.6270 -8.4381 46 1 0.0577 5.0432 -9.1387 47 1 6.1113 3.7600 -8.7668 48 1 4.9334 2.4087 -8.7848 49 1 5.7537 0.3376 -7.9870 50 1 7.1757 0.9647 -8.8548 51 1 7.3625 0.2648 -7.2289 52 1 3.6480 1.4503 -4.5360 53 1 2.4237 1.4413 -2.4069 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989856411.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:33:51 Heat of formation + Delta-G solvation = -2.358571 kcal Electronic energy + Delta-G solvation = -30766.811970 eV Core-core repulsion = 26831.007488 eV Total energy + Delta-G solvation = -3935.804482 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.56625 -40.37071 -38.74008 -37.48082 -35.97025 -34.46888 -33.29099 -32.99102 -32.02470 -30.61071 -30.02741 -28.43873 -26.88798 -26.32231 -25.69871 -23.92141 -23.25956 -22.60689 -21.77638 -21.47860 -20.29119 -19.25645 -18.48061 -18.03303 -17.47505 -17.01521 -16.67704 -16.00532 -15.91917 -15.67350 -15.57189 -15.33124 -15.23247 -14.96376 -14.69047 -14.56604 -14.39274 -14.16882 -13.95351 -13.74714 -13.46578 -13.37614 -13.27764 -13.06623 -13.03508 -12.88043 -12.81987 -12.79446 -12.65935 -12.28278 -12.23269 -12.04427 -12.02309 -11.76475 -11.74143 -11.56013 -11.47262 -11.03159 -10.86604 -10.71927 -9.97134 -9.66235 -9.02906 -8.27235 -7.93225 -5.22862 0.15121 0.47554 1.50190 1.51560 1.60645 1.83152 2.02670 2.13412 2.58135 2.90978 3.38068 3.45162 3.75994 3.85032 3.90021 3.92667 3.98889 4.03464 4.07795 4.16866 4.25860 4.29600 4.38610 4.43588 4.45384 4.47789 4.51753 4.58944 4.65325 4.69455 4.73552 4.74143 4.77486 4.86676 4.91159 4.93836 5.04869 5.07517 5.13417 5.17014 5.18735 5.22898 5.23679 5.31187 5.38386 5.41170 5.45280 5.55883 5.58631 5.76357 6.27823 6.28860 6.45350 6.55716 7.17734 7.35900 8.06219 8.31730 9.29735 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.007091 B = 0.003636 C = 0.002617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3947.563580 B = 7698.854998 C =10695.504176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.137 4.137 3 C 0.114 3.886 4 N -0.625 5.625 5 C 0.083 3.917 6 C 0.241 3.759 7 C -0.208 4.208 8 C -0.021 4.021 9 C -0.215 4.215 10 C 0.575 3.425 11 O -0.583 6.583 12 N -0.606 5.606 13 C 0.089 3.911 14 C 0.165 3.835 15 H 0.065 0.935 16 N -0.720 5.720 17 C -0.242 4.242 18 H 0.077 0.923 19 C -0.066 4.066 20 N -0.965 5.965 21 Si 0.966 3.034 22 H -0.267 1.267 23 H -0.296 1.296 24 H -0.294 1.294 25 C -0.125 4.125 26 C 0.137 3.863 27 H 0.076 0.924 28 C -0.152 4.152 29 C -0.043 4.043 30 C -0.213 4.213 31 H 0.066 0.934 32 H 0.052 0.948 33 H 0.058 0.942 34 H 0.048 0.952 35 H 0.068 0.932 36 H 0.094 0.906 37 H 0.071 0.929 38 H 0.057 0.943 39 H 0.085 0.915 40 H 0.075 0.925 41 H 0.152 0.848 42 H 0.130 0.870 43 H 0.062 0.938 44 H 0.072 0.928 45 H 0.378 0.622 46 H 0.251 0.749 47 H 0.093 0.907 48 H 0.076 0.924 49 H 0.050 0.950 50 H 0.085 0.915 51 H 0.051 0.949 52 H 0.126 0.874 53 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.399 -8.853 19.644 22.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.175 4.175 3 C -0.008 4.008 4 N -0.332 5.332 5 C -0.059 4.059 6 C 0.135 3.865 7 C -0.230 4.230 8 C -0.040 4.040 9 C -0.220 4.220 10 C 0.367 3.633 11 O -0.465 6.465 12 N -0.338 5.338 13 C -0.037 4.037 14 C 0.054 3.946 15 H 0.083 0.917 16 N -0.359 5.359 17 C -0.373 4.373 18 H 0.095 0.905 19 C -0.259 4.259 20 N -0.615 5.615 21 Si 0.796 3.204 22 H -0.191 1.191 23 H -0.223 1.223 24 H -0.221 1.221 25 C -0.164 4.164 26 C 0.034 3.966 27 H 0.094 0.906 28 C -0.210 4.210 29 C -0.063 4.063 30 C -0.235 4.235 31 H 0.085 0.915 32 H 0.071 0.929 33 H 0.077 0.923 34 H 0.067 0.933 35 H 0.087 0.913 36 H 0.113 0.887 37 H 0.089 0.911 38 H 0.076 0.924 39 H 0.104 0.896 40 H 0.094 0.906 41 H 0.170 0.830 42 H 0.147 0.853 43 H 0.080 0.920 44 H 0.090 0.910 45 H 0.211 0.789 46 H 0.060 0.940 47 H 0.111 0.889 48 H 0.095 0.905 49 H 0.069 0.931 50 H 0.104 0.896 51 H 0.070 0.930 52 H 0.144 0.856 53 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 5.823 -8.999 19.961 22.657 hybrid contribution -0.946 0.456 -0.413 1.128 sum 4.877 -8.543 19.549 21.884 Atomic orbital electron populations 1.21702 0.94419 1.02291 1.02365 1.21893 0.96638 0.96937 1.02079 1.21703 0.78348 0.97113 1.03665 1.46666 1.05606 1.77704 1.03256 1.21889 0.97693 1.02194 0.84075 1.18101 0.91471 0.90489 0.86428 1.20773 0.91957 1.11550 0.98730 1.20965 0.99936 0.92665 0.90478 1.19536 0.93993 1.15671 0.92822 1.18255 0.84348 0.77340 0.83336 1.90679 1.24580 1.46234 1.85035 1.48524 1.19877 1.53488 1.11897 1.23356 0.83600 0.95287 1.01440 1.21504 0.86389 0.94615 0.92064 0.91704 1.42407 1.17973 1.34680 1.40859 1.19639 0.99094 1.05381 1.13221 0.90504 1.25458 0.99144 1.01995 0.99255 1.69806 1.20022 1.42872 1.28823 0.85184 0.78495 0.79205 0.77538 1.19127 1.22292 1.22086 1.22953 0.97428 0.98670 0.97302 1.21612 0.96066 0.96934 0.82019 0.90564 1.22058 1.01756 0.95849 1.01365 1.21405 0.92732 0.93309 0.98821 1.20739 1.00364 1.11644 0.90752 0.91465 0.92927 0.92265 0.93275 0.91278 0.88727 0.91086 0.92404 0.89618 0.90593 0.83036 0.85252 0.92028 0.90993 0.78945 0.93989 0.88894 0.90490 0.93082 0.89620 0.92954 0.85600 0.84725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 9.91 71.98 0.71 -1.09 16 2 C -0.14 -1.86 6.26 30.60 0.19 -1.67 16 3 C 0.11 1.63 5.14 86.38 0.44 2.07 16 4 N -0.62 -10.35 2.99 -722.20 -2.16 -12.51 16 5 C 0.08 0.88 10.17 127.77 1.30 2.18 16 6 C 0.24 5.38 6.55 38.47 0.25 5.63 16 7 C -0.21 -4.59 9.18 22.36 0.21 -4.38 16 8 C -0.02 -0.56 9.59 22.50 0.22 -0.35 16 9 C -0.22 -6.76 5.58 -20.08 -0.11 -6.87 16 10 C 0.58 20.40 7.37 86.69 0.64 21.04 16 11 O -0.58 -23.23 15.70 -4.00 -0.06 -23.29 16 12 N -0.61 -20.33 3.06 -791.30 -2.42 -22.76 16 13 C 0.09 3.11 4.78 86.93 0.42 3.52 16 14 C 0.17 6.19 3.73 46.46 0.17 6.37 16 15 H 0.06 2.49 8.09 -2.39 -0.02 2.47 16 16 N -0.72 -33.88 5.24 -316.00 -1.66 -35.53 16 17 C -0.24 -12.64 9.96 84.04 0.84 -11.80 16 18 H 0.08 3.89 7.83 -2.91 -0.02 3.86 16 19 C -0.07 -3.59 5.50 84.86 0.47 -3.12 16 20 N -0.97 -56.45 13.06 21.65 0.28 -56.17 16 21 Si 0.97 44.25 29.55 68.60 2.03 46.28 16 22 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 23 H -0.30 -13.67 7.11 99.48 0.71 -12.96 16 24 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 25 C -0.12 -3.89 6.12 31.79 0.19 -3.69 16 26 C 0.14 4.17 3.48 45.34 0.16 4.33 16 27 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 28 C -0.15 -4.30 9.10 71.98 0.65 -3.64 16 29 C -0.04 -1.28 7.88 22.50 0.18 -1.10 16 30 C -0.21 -5.43 9.18 22.36 0.21 -5.22 16 31 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 36 H 0.09 0.99 8.07 -2.39 -0.02 0.97 16 37 H 0.07 1.18 6.17 -2.39 -0.01 1.16 16 38 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 39 H 0.09 0.60 8.07 -2.39 -0.02 0.58 16 40 H 0.08 0.74 6.17 -2.39 -0.01 0.72 16 41 H 0.15 2.45 6.11 -2.91 -0.02 2.43 16 42 H 0.13 3.37 7.97 -2.91 -0.02 3.35 16 43 H 0.06 2.25 7.21 -2.39 -0.02 2.24 16 44 H 0.07 2.56 6.48 -2.38 -0.02 2.54 16 45 H 0.38 19.08 7.77 -92.71 -0.72 18.36 16 46 H 0.25 14.31 8.31 -92.71 -0.77 13.54 16 47 H 0.09 2.62 8.14 -2.39 -0.02 2.60 16 48 H 0.08 2.43 7.71 -2.39 -0.02 2.42 16 49 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 50 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 51 H 0.05 1.65 6.77 -2.39 -0.02 1.64 16 52 H 0.13 3.88 5.15 -2.91 -0.01 3.87 16 53 H 0.14 3.12 6.11 -2.91 -0.02 3.11 16 Total: -1.00 -65.93 415.85 3.32 -62.61 By element: Atomic # 1 Polarization: 39.00 SS G_CDS: 0.18 Total: 39.18 kcal Atomic # 6 Polarization: -4.94 SS G_CDS: 7.13 Total: 2.19 kcal Atomic # 7 Polarization: -121.02 SS G_CDS: -5.96 Total: -126.98 kcal Atomic # 8 Polarization: -23.23 SS G_CDS: -0.06 Total: -23.29 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.28 kcal Total: -65.93 3.32 -62.61 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989856411.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.247 kcal (2) G-P(sol) polarization free energy of solvation -65.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds