Wall clock time and date at job start Wed Apr 1 2020 03:00:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47045 * 2 1 4 4 C 1.53002 * 109.47172 * 120.00006 * 2 1 3 5 5 C 1.50696 * 109.47346 * 65.00112 * 4 2 1 6 6 C 1.35450 * 126.06642 * 270.04540 * 5 4 2 7 7 N 1.35535 * 108.87324 * 179.69649 * 6 5 4 8 8 H 0.96999 * 125.68165 * 180.30984 * 7 6 5 9 9 C 1.37654 * 108.64049 * 0.42996 * 7 6 5 10 10 C 1.46677 * 126.23108 * 179.82978 * 9 7 6 11 11 O 1.21700 * 119.99863 * 179.69655 * 10 9 7 12 12 N 1.34778 * 120.00370 * 359.69510 * 10 9 7 13 13 C 1.46492 * 120.00227 * 180.02562 * 12 10 9 14 14 C 1.53789 * 112.56523 * 300.61929 * 13 12 10 15 15 C 1.54224 * 106.57587 * 238.42686 * 14 13 12 16 16 C 1.54756 * 104.27097 * 335.21857 * 15 14 13 17 17 C 1.54777 * 103.21765 * 37.74611 * 16 15 14 18 18 H 1.08998 * 111.86781 * 84.91680 * 17 16 15 19 19 N 1.46970 * 108.68875 * 209.79821 * 17 16 15 20 20 C 1.36940 * 125.57956 * 294.12755 * 19 17 16 21 21 H 1.07990 * 119.99890 * 359.97438 * 20 19 17 22 22 C 1.38811 * 120.00042 * 180.02562 * 20 19 17 23 23 N 1.31626 * 120.00148 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 120.00196 * 179.97438 * 22 20 19 25 25 H 1.48495 * 109.46838 * 359.97438 * 24 22 20 26 26 H 1.48504 * 109.46998 * 119.99605 * 24 22 20 27 27 H 1.48500 * 109.47054 * 239.99801 * 24 22 20 28 28 C 1.47372 * 108.84209 * 114.12440 * 19 17 16 29 29 C 1.54867 * 104.82107 * 335.31075 * 28 19 17 30 30 C 1.37865 * 107.53272 * 359.57329 * 9 7 6 31 31 H 1.09003 * 109.47188 * 60.00380 * 1 2 3 32 32 H 1.09003 * 109.46980 * 179.97438 * 1 2 3 33 33 H 1.08992 * 109.47467 * 299.99767 * 1 2 3 34 34 H 1.09002 * 109.47244 * 239.99721 * 2 1 3 35 35 H 1.09006 * 109.47504 * 180.02562 * 3 2 1 36 36 H 1.09007 * 109.47261 * 299.99672 * 3 2 1 37 37 H 1.09002 * 109.47327 * 59.99771 * 3 2 1 38 38 H 1.08998 * 109.46780 * 304.99905 * 4 2 1 39 39 H 1.09001 * 109.47205 * 185.00235 * 4 2 1 40 40 H 1.08000 * 125.56450 * 359.92464 * 6 5 4 41 41 H 0.97006 * 119.99716 * 0.02562 * 12 10 9 42 42 H 1.08998 * 109.98794 * 119.19800 * 14 13 12 43 43 H 1.09004 * 110.14851 * 357.74432 * 14 13 12 44 44 H 1.09002 * 110.49589 * 216.48360 * 15 14 13 45 45 H 1.09006 * 110.49410 * 93.95107 * 15 14 13 46 46 H 1.09005 * 110.66972 * 156.17733 * 16 15 14 47 47 H 1.09000 * 110.67388 * 279.31231 * 16 15 14 48 48 H 0.96994 * 120.00480 * 179.97438 * 23 22 20 49 49 H 1.08997 * 110.37247 * 216.46962 * 28 19 17 50 50 H 1.09006 * 110.36530 * 94.14114 * 28 19 17 51 51 H 1.08999 * 110.96451 * 278.95105 * 29 28 19 52 52 H 1.08998 * 110.96787 * 155.19296 * 29 28 19 53 53 H 1.08003 * 126.46095 * 180.28944 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6414 -2.1733 1.1889 6 6 0.4945 -2.7062 1.6741 7 7 0.4915 -4.0388 1.4271 8 1 -0.2161 -4.6572 1.6675 9 6 1.6610 -4.3692 0.7806 10 6 2.0572 -5.7097 0.3364 11 8 3.1205 -5.8727 -0.2326 12 7 1.2436 -6.7611 0.5584 13 6 1.6396 -8.1001 0.1153 14 6 1.8707 -8.1748 -1.4033 15 6 0.9043 -9.2487 -1.9431 16 6 0.6375 -10.1678 -0.7270 17 6 0.5761 -9.1759 0.4596 18 1 -0.4175 -8.7431 0.5759 19 7 1.0363 -9.8648 1.6735 20 6 0.3995 -10.9111 2.2858 21 1 -0.5230 -11.2957 1.8767 22 6 0.9391 -11.4768 3.4328 23 7 2.0632 -11.0077 3.9317 24 14 0.0701 -12.9037 4.2684 25 1 -1.1650 -13.2400 3.5158 26 1 0.9707 -14.0842 4.2956 27 1 -0.2863 -12.5208 5.6582 28 6 2.2952 -9.2452 2.1241 29 6 2.9043 -8.6128 0.8484 30 6 2.3894 -3.2095 0.6214 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3634 0.5137 0.8899 34 1 1.8933 -0.5139 -0.8900 35 1 3.1300 1.4426 -0.0005 36 1 1.6766 1.9563 -0.8901 37 1 1.6766 1.9563 0.8900 38 1 1.6054 -0.2617 2.1369 39 1 3.1263 -0.6443 1.2952 40 1 -0.2911 -2.1580 2.1727 41 1 0.3959 -6.6312 1.0116 42 1 2.9015 -8.4630 -1.6096 43 1 1.6529 -7.2113 -1.8641 44 1 1.3716 -9.8112 -2.7514 45 1 -0.0234 -8.7898 -2.2854 46 1 -0.3121 -10.6907 -0.8409 47 1 1.4547 -10.8767 -0.5939 48 1 2.4402 -11.4027 4.7334 49 1 2.9665 -10.0019 2.5301 50 1 2.0939 -8.4760 2.8698 51 1 3.4243 -9.3623 0.2517 52 1 3.5698 -7.7876 1.1017 53 1 3.3555 -3.1184 0.1473 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000992411458.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:00:38 Heat of formation + Delta-G solvation = -1.431995 kcal Electronic energy + Delta-G solvation = -31131.292795 eV Core-core repulsion = 27195.528492 eV Total energy + Delta-G solvation = -3935.764303 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -42.39186 -41.33064 -39.28384 -37.17347 -36.06925 -34.86000 -33.37511 -32.35794 -31.63668 -30.36053 -28.45228 -27.89163 -27.81794 -26.82257 -25.75879 -24.12110 -22.31043 -21.53304 -21.30366 -20.97361 -20.41206 -20.03858 -19.21043 -18.91593 -17.34256 -16.89866 -16.77193 -16.31867 -15.96383 -15.78976 -15.37096 -15.28687 -15.00180 -14.73553 -14.55979 -14.50169 -14.38969 -14.18661 -13.92900 -13.52524 -13.51310 -13.21524 -12.98136 -12.95545 -12.85698 -12.70468 -12.68796 -12.34249 -12.33084 -12.00407 -11.92519 -11.76663 -11.73580 -11.62694 -11.59667 -11.52599 -11.38265 -11.28673 -10.96613 -10.75323 -10.08047 -9.72674 -9.03900 -8.89069 -7.75399 -5.20758 0.50215 1.46742 1.47578 1.57523 1.78494 2.04832 2.24719 2.39647 2.49612 3.32624 3.35114 3.61098 3.89181 3.91812 3.93122 4.05946 4.14477 4.24013 4.30624 4.33369 4.38351 4.41291 4.44475 4.55086 4.58197 4.62387 4.77280 4.82165 4.85175 4.90662 4.92327 4.93698 5.06404 5.08502 5.12064 5.14322 5.18037 5.19521 5.20834 5.29063 5.32080 5.40727 5.45138 5.49316 5.56040 5.61711 5.62715 5.64833 5.80940 5.85754 5.99135 6.28716 6.46862 6.61771 7.09823 7.17143 7.78073 8.42187 9.26147 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.016408 B = 0.002484 C = 0.002324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1706.082298 B =11269.468916 C =12047.453325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.091 4.091 3 C -0.145 4.145 4 C -0.037 4.037 5 C -0.183 4.183 6 C 0.044 3.956 7 N -0.529 5.529 8 H 0.427 0.573 9 C -0.075 4.075 10 C 0.586 3.414 11 O -0.564 6.564 12 N -0.701 5.701 13 C 0.172 3.828 14 C -0.104 4.104 15 C -0.109 4.109 16 C -0.124 4.124 17 C 0.155 3.845 18 H 0.059 0.941 19 N -0.610 5.610 20 C -0.222 4.222 21 H 0.087 0.913 22 C -0.071 4.071 23 N -0.952 5.952 24 Si 0.977 3.023 25 H -0.263 1.263 26 H -0.296 1.296 27 H -0.296 1.296 28 C 0.164 3.836 29 C -0.131 4.131 30 C -0.118 4.118 31 H 0.049 0.951 32 H 0.052 0.948 33 H 0.064 0.936 34 H 0.052 0.948 35 H 0.052 0.948 36 H 0.055 0.945 37 H 0.062 0.938 38 H 0.083 0.917 39 H 0.063 0.937 40 H 0.205 0.795 41 H 0.402 0.598 42 H 0.062 0.938 43 H 0.064 0.936 44 H 0.079 0.921 45 H 0.081 0.919 46 H 0.068 0.932 47 H 0.050 0.950 48 H 0.244 0.756 49 H 0.072 0.928 50 H -0.019 1.019 51 H 0.067 0.933 52 H 0.057 0.943 53 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.542 21.291 -8.699 23.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.110 4.110 3 C -0.203 4.203 4 C -0.075 4.075 5 C -0.189 4.189 6 C -0.093 4.093 7 N -0.125 5.125 8 H 0.267 0.733 9 C -0.188 4.188 10 C 0.376 3.624 11 O -0.443 6.443 12 N -0.350 5.350 13 C 0.085 3.915 14 C -0.143 4.143 15 C -0.147 4.147 16 C -0.164 4.164 17 C 0.048 3.952 18 H 0.077 0.923 19 N -0.334 5.334 20 C -0.350 4.350 21 H 0.105 0.895 22 C -0.263 4.263 23 N -0.602 5.602 24 Si 0.806 3.194 25 H -0.187 1.187 26 H -0.224 1.224 27 H -0.224 1.224 28 C 0.039 3.961 29 C -0.170 4.170 30 C -0.145 4.145 31 H 0.068 0.932 32 H 0.071 0.929 33 H 0.083 0.917 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.074 0.926 37 H 0.081 0.919 38 H 0.101 0.899 39 H 0.082 0.918 40 H 0.222 0.778 41 H 0.238 0.762 42 H 0.081 0.919 43 H 0.083 0.917 44 H 0.097 0.903 45 H 0.100 0.900 46 H 0.087 0.913 47 H 0.068 0.932 48 H 0.054 0.946 49 H 0.090 0.910 50 H -0.001 1.001 51 H 0.085 0.915 52 H 0.076 0.924 53 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -5.895 20.859 -8.905 23.434 hybrid contribution -0.494 -1.285 1.211 1.833 sum -6.388 19.574 -7.694 21.981 Atomic orbital electron populations 1.21846 0.94758 1.01704 1.01869 1.21062 0.96461 0.95918 0.97559 1.21833 1.00906 0.95411 1.02129 1.20037 1.00589 0.88488 0.98416 1.19591 0.96175 0.96273 1.06874 1.22408 1.00824 0.82438 1.03607 1.41995 1.16269 1.09546 1.44695 0.73333 1.20169 0.92283 0.93977 1.12354 1.17366 0.83559 0.83144 0.78367 1.90792 1.24021 1.85316 1.44211 1.45682 1.22530 1.06521 1.60310 1.21515 0.94668 0.80855 0.94456 1.22223 1.00160 0.99618 0.92295 1.22306 0.99388 0.95901 0.97150 1.22809 1.01305 0.97703 0.94627 1.22032 0.94730 0.91163 0.87306 0.92336 1.44706 1.24567 1.36136 1.28006 1.19441 1.04247 1.06202 1.05157 0.89519 1.25615 0.98674 1.02647 0.99384 1.70073 1.21758 1.44601 1.23785 0.85013 0.77868 0.78643 0.77840 1.18712 1.22383 1.22362 1.21601 0.88462 0.94475 0.91548 1.23145 0.96634 0.99081 0.98190 1.21284 0.99895 0.90852 1.02460 0.93154 0.92940 0.91668 0.92929 0.92882 0.92630 0.91863 0.89881 0.91820 0.77836 0.76231 0.91916 0.91714 0.90281 0.90014 0.91312 0.93163 0.94618 0.91025 1.00114 0.91480 0.92395 0.85011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.72 8.91 71.98 0.64 -1.08 16 2 C -0.09 -1.26 2.91 -10.80 -0.03 -1.29 16 3 C -0.15 -1.64 9.19 71.98 0.66 -0.98 16 4 C -0.04 -0.56 5.18 29.85 0.15 -0.40 16 5 C -0.18 -3.55 4.82 -20.12 -0.10 -3.64 16 6 C 0.04 0.69 10.42 83.48 0.87 1.56 16 7 N -0.53 -10.00 5.99 -183.63 -1.10 -11.10 16 8 H 0.43 6.08 8.19 -92.71 -0.76 5.32 16 9 C -0.07 -2.03 7.06 40.35 0.28 -1.74 16 10 C 0.59 19.41 6.96 86.45 0.60 20.01 16 11 O -0.56 -22.45 14.76 -4.35 -0.06 -22.51 16 12 N -0.70 -21.95 5.24 -419.38 -2.20 -24.14 16 13 C 0.17 6.12 0.74 5.26 0.00 6.12 16 14 C -0.10 -3.27 5.24 31.27 0.16 -3.11 16 15 C -0.11 -2.96 6.83 31.61 0.22 -2.74 16 16 C -0.12 -4.25 6.21 31.80 0.20 -4.05 16 17 C 0.15 5.91 3.65 46.24 0.17 6.08 16 18 H 0.06 2.10 7.99 -2.39 -0.02 2.08 16 19 N -0.61 -29.96 3.03 -663.70 -2.01 -31.97 16 20 C -0.22 -11.82 10.01 84.03 0.84 -10.98 16 21 H 0.09 4.37 7.83 -2.92 -0.02 4.35 16 22 C -0.07 -3.96 5.49 84.86 0.47 -3.49 16 23 N -0.95 -56.83 10.07 21.65 0.22 -56.61 16 24 Si 0.98 45.01 29.55 68.60 2.03 47.03 16 25 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 26 H -0.30 -13.84 7.11 99.48 0.71 -13.13 16 27 H -0.30 -13.76 7.11 99.48 0.71 -13.05 16 28 C 0.16 8.37 5.90 86.85 0.51 8.88 16 29 C -0.13 -5.60 5.76 31.89 0.18 -5.42 16 30 C -0.12 -3.07 10.59 22.57 0.24 -2.84 16 31 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.05 0.69 6.42 -2.39 -0.02 0.68 16 33 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 34 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.05 0.61 8.14 -2.38 -0.02 0.59 16 36 H 0.05 0.59 8.14 -2.38 -0.02 0.57 16 37 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 38 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 39 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 40 H 0.20 1.61 8.06 -2.91 -0.02 1.58 16 41 H 0.40 10.68 7.63 -92.70 -0.71 9.98 16 42 H 0.06 2.09 7.38 -2.39 -0.02 2.07 16 43 H 0.06 2.00 7.45 -2.38 -0.02 1.98 16 44 H 0.08 1.89 8.14 -2.39 -0.02 1.88 16 45 H 0.08 1.87 8.14 -2.38 -0.02 1.85 16 46 H 0.07 2.20 8.14 -2.38 -0.02 2.18 16 47 H 0.05 1.97 8.09 -2.39 -0.02 1.95 16 48 H 0.24 14.26 8.31 -92.71 -0.77 13.49 16 49 H 0.07 4.21 5.83 -2.39 -0.01 4.19 16 50 H -0.02 -1.05 8.14 -2.38 -0.02 -1.07 16 51 H 0.07 2.86 7.63 -2.39 -0.02 2.84 16 52 H 0.06 2.56 6.82 -2.39 -0.02 2.55 16 53 H 0.13 3.65 8.06 -2.91 -0.02 3.63 16 Total: -1.00 -70.25 409.21 2.39 -67.86 By element: Atomic # 1 Polarization: 31.10 SS G_CDS: -0.56 Total: 30.55 kcal Atomic # 6 Polarization: -5.17 SS G_CDS: 6.08 Total: 0.90 kcal Atomic # 7 Polarization: -118.74 SS G_CDS: -5.09 Total: -123.83 kcal Atomic # 8 Polarization: -22.45 SS G_CDS: -0.06 Total: -22.51 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.03 kcal Total: -70.25 2.39 -67.86 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992411458.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.427 kcal (2) G-P(sol) polarization free energy of solvation -70.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds