Wall clock time and date at job start Wed Apr 1 2020 04:24:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 N 1.46897 * 109.47440 * 86.93557 * 3 2 1 5 5 C 1.46844 * 111.00384 * 189.99750 * 4 3 2 6 6 C 1.53040 * 109.52527 * 185.83739 * 5 4 3 7 7 C 1.53112 * 109.27953 * 300.81863 * 6 5 4 8 8 C 1.50694 * 109.52482 * 177.55746 * 7 6 5 9 9 O 1.21285 * 120.00022 * 0.12949 * 8 7 6 10 10 N 1.34778 * 120.00559 * 180.12876 * 8 7 6 11 11 C 1.46496 * 120.00363 * 180.02562 * 10 8 7 12 12 C 1.53578 * 112.67243 * 300.66254 * 11 10 8 13 13 C 1.54222 * 106.67636 * 238.55628 * 12 11 10 14 14 C 1.55956 * 104.70664 * 335.63450 * 13 12 11 15 15 C 1.54770 * 102.65942 * 36.68504 * 14 13 12 16 16 H 1.08997 * 111.86947 * 86.52718 * 15 14 13 17 17 N 1.46975 * 108.68688 * 210.47394 * 15 14 13 18 18 C 1.36945 * 125.58019 * 295.04527 * 17 15 14 19 19 H 1.08001 * 119.99621 * 14.74854 * 18 17 15 20 20 C 1.38805 * 119.99903 * 194.75248 * 18 17 15 21 21 N 1.31625 * 119.99959 * 203.50817 * 20 18 17 22 22 Si 1.86796 * 120.00390 * 23.77863 * 20 18 17 23 23 H 1.48504 * 109.47420 * 269.72569 * 22 20 18 24 24 H 1.48497 * 109.47121 * 29.72343 * 22 20 18 25 25 H 1.48503 * 109.47559 * 149.72624 * 22 20 18 26 26 C 1.47369 * 108.84288 * 115.31295 * 17 15 14 27 27 C 1.54920 * 112.33173 * 64.35848 * 11 10 8 28 28 C 1.53119 * 109.21250 * 57.62326 * 7 6 5 29 29 C 1.46846 * 110.99706 * 314.20698 * 4 3 2 30 30 H 4.40886 * 5.52243 * 180.02562 * 4 1 2 31 31 H 1.09004 * 109.47599 * 326.93153 * 3 2 1 32 32 H 1.09002 * 109.46932 * 206.93385 * 3 2 1 33 33 H 1.09006 * 109.46258 * 65.81903 * 5 4 3 34 34 H 1.09000 * 109.45564 * 305.85460 * 5 4 3 35 35 H 1.09004 * 109.50095 * 180.87941 * 6 5 4 36 36 H 1.08996 * 109.53279 * 60.78166 * 6 5 4 37 37 H 1.09004 * 109.52615 * 297.68952 * 7 6 5 38 38 H 0.97007 * 119.99438 * 359.97438 * 10 8 7 39 39 H 1.09001 * 110.01430 * 357.85724 * 12 11 10 40 40 H 1.08997 * 110.01902 * 119.19923 * 12 11 10 41 41 H 1.08999 * 110.49911 * 93.72492 * 13 12 11 42 42 H 1.09000 * 110.49654 * 216.25371 * 13 12 11 43 43 H 1.09002 * 110.35357 * 278.70184 * 14 13 12 44 44 H 1.08999 * 111.51162 * 155.20139 * 14 13 12 45 45 H 0.97003 * 119.99842 * 354.90902 * 21 20 18 46 46 H 1.09004 * 110.37062 * 93.91209 * 26 17 15 47 47 H 1.09000 * 110.37189 * 216.24220 * 26 17 15 48 48 H 1.08994 * 110.96578 * 204.32936 * 27 11 10 49 49 H 1.08999 * 110.96541 * 328.09452 * 27 11 10 50 50 H 1.08999 * 109.50203 * 62.31647 * 28 7 6 51 51 H 1.09001 * 109.50739 * 182.43831 * 28 7 6 52 52 H 1.08998 * 109.46561 * 294.17440 * 29 4 3 53 53 H 1.08998 * 109.46549 * 54.14888 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1357 -0.0732 -1.3830 5 6 4.5841 -0.3126 -1.4163 6 6 5.0817 -0.2387 -2.8617 7 6 4.3522 -1.2905 -3.7018 8 6 4.7941 -1.1826 -5.1385 9 8 5.6139 -0.3485 -5.4598 10 7 4.2785 -2.0130 -6.0664 11 6 4.7086 -1.9085 -7.4629 12 6 4.4283 -0.5244 -8.0666 13 6 3.5163 -0.7514 -9.2894 14 6 3.8024 -2.2200 -9.7295 15 6 4.0056 -2.9457 -8.3777 16 1 3.0611 -3.2875 -7.9544 17 7 4.9486 -4.0554 -8.5761 18 6 4.7268 -5.1599 -9.3548 19 1 3.9149 -5.1643 -10.0669 20 6 5.5456 -6.2737 -9.2287 21 7 5.6603 -7.1226 -10.2280 22 14 6.4786 -6.5719 -7.6382 23 1 7.8097 -5.9179 -7.7149 24 1 5.7124 -6.0026 -6.5006 25 1 6.6557 -8.0321 -7.4343 26 6 6.1692 -3.7882 -7.7948 27 6 6.2099 -2.2453 -7.6433 28 6 2.8428 -1.0495 -3.6114 29 6 2.4104 -1.0984 -2.1440 30 1 -1.0500 0.0002 -0.0001 31 1 3.0098 -0.8604 0.5607 32 1 3.0089 0.9170 0.4655 33 1 4.7984 -1.3006 -1.0085 34 1 5.0912 0.4447 -0.8184 35 1 6.1541 -0.4320 -2.8877 36 1 4.8807 0.7534 -3.2660 37 1 4.5855 -2.2855 -3.3227 38 1 3.6231 -2.6804 -5.8094 39 1 3.9220 0.1059 -7.3355 40 1 5.3624 -0.0572 -8.3785 41 1 2.4682 -0.6489 -9.0082 42 1 3.7664 -0.0520 -10.0872 43 1 4.7103 -2.2655 -10.3310 44 1 2.9585 -2.6462 -10.2720 45 1 5.1174 -7.0110 -11.0240 46 1 6.1062 -4.2662 -6.8172 47 1 7.0492 -4.1395 -8.3338 48 1 6.6107 -1.7724 -8.5398 49 1 6.7830 -1.9565 -6.7622 50 1 2.6051 -0.0705 -4.0274 51 1 2.3166 -1.8216 -4.1727 52 1 2.6348 -2.0826 -1.7329 53 1 1.3388 -0.9118 -2.0749 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000992506814.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:24:13 Heat of formation + Delta-G solvation = 24.325707 kcal Electronic energy + Delta-G solvation = -31753.360180 eV Core-core repulsion = 27818.712815 eV Total energy + Delta-G solvation = -3934.647365 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.83936 -40.45927 -39.12446 -36.18443 -35.54934 -34.75576 -33.89885 -33.08940 -31.74005 -31.50765 -28.80195 -28.52662 -27.47261 -25.18351 -24.82625 -24.14160 -22.98671 -21.96931 -21.23432 -20.41157 -20.26166 -19.45312 -18.98454 -18.32265 -17.35962 -17.00071 -16.81366 -16.30005 -16.10739 -15.90337 -15.73720 -15.64846 -15.29459 -14.97589 -14.81073 -14.66069 -14.44417 -14.18852 -13.91613 -13.73107 -13.54848 -13.41549 -13.13388 -13.02275 -12.80973 -12.61698 -12.44680 -12.33102 -12.16087 -12.01237 -11.85583 -11.72784 -11.69456 -11.56091 -11.53039 -11.44699 -11.29343 -11.17809 -11.05807 -10.63760 -10.56534 -9.97494 -9.29612 -9.12993 -8.57531 -5.42469 1.39504 1.49128 1.66148 1.68993 1.75927 1.92644 2.16075 2.52119 3.04041 3.07290 3.22505 3.40374 3.46690 3.62006 3.72642 3.79376 3.85994 3.87167 4.18520 4.20439 4.22647 4.25805 4.35800 4.38705 4.41790 4.44333 4.54227 4.55016 4.58938 4.67894 4.70067 4.76173 4.77193 4.78915 4.87037 4.90755 4.93355 5.01442 5.02622 5.10062 5.12759 5.14511 5.18748 5.21405 5.26731 5.37959 5.46576 5.62711 5.70493 6.01726 6.08858 6.13730 6.60502 6.70165 6.84414 7.30247 7.50522 8.15706 8.89377 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.013700 B = 0.002889 C = 0.002715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2043.295864 B = 9689.437657 C =10311.477783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.216 4.216 3 C 0.161 3.839 4 N -0.547 5.547 5 C 0.061 3.939 6 C -0.089 4.089 7 C -0.103 4.103 8 C 0.520 3.480 9 O -0.565 6.565 10 N -0.705 5.705 11 C 0.172 3.828 12 C -0.100 4.100 13 C -0.110 4.110 14 C -0.124 4.124 15 C 0.153 3.847 16 H 0.056 0.944 17 N -0.617 5.617 18 C -0.301 4.301 19 H 0.048 0.952 20 C -0.077 4.077 21 N -0.961 5.961 22 Si 1.103 2.897 23 H -0.283 1.283 24 H -0.264 1.264 25 H -0.307 1.307 26 C 0.103 3.897 27 C -0.119 4.119 28 C -0.100 4.100 29 C 0.059 3.941 30 H 0.242 0.758 31 H 0.068 0.932 32 H 0.109 0.891 33 H 0.047 0.953 34 H 0.095 0.905 35 H 0.072 0.928 36 H 0.063 0.937 37 H 0.106 0.894 38 H 0.408 0.592 39 H 0.069 0.931 40 H 0.067 0.933 41 H 0.078 0.922 42 H 0.078 0.922 43 H 0.048 0.952 44 H 0.056 0.944 45 H 0.248 0.752 46 H 0.032 0.968 47 H 0.038 0.962 48 H 0.076 0.924 49 H 0.079 0.921 50 H 0.066 0.934 51 H 0.084 0.916 52 H 0.042 0.958 53 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.097 17.097 21.338 28.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.216 4.216 3 C 0.035 3.965 4 N -0.273 5.273 5 C -0.066 4.066 6 C -0.128 4.128 7 C -0.125 4.125 8 C 0.308 3.692 9 O -0.443 6.443 10 N -0.356 5.356 11 C 0.085 3.915 12 C -0.139 4.139 13 C -0.148 4.148 14 C -0.164 4.164 15 C 0.046 3.954 16 H 0.074 0.926 17 N -0.342 5.342 18 C -0.430 4.430 19 H 0.066 0.934 20 C -0.271 4.271 21 N -0.605 5.605 22 Si 0.931 3.069 23 H -0.210 1.210 24 H -0.189 1.189 25 H -0.236 1.236 26 C -0.022 4.022 27 C -0.158 4.158 28 C -0.138 4.138 29 C -0.069 4.069 30 H 0.258 0.742 31 H 0.086 0.914 32 H 0.127 0.873 33 H 0.065 0.935 34 H 0.113 0.887 35 H 0.090 0.910 36 H 0.082 0.918 37 H 0.124 0.876 38 H 0.244 0.756 39 H 0.087 0.913 40 H 0.086 0.914 41 H 0.096 0.904 42 H 0.096 0.904 43 H 0.067 0.933 44 H 0.075 0.925 45 H 0.058 0.942 46 H 0.050 0.950 47 H 0.056 0.944 48 H 0.095 0.905 49 H 0.097 0.903 50 H 0.084 0.916 51 H 0.103 0.897 52 H 0.060 0.940 53 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -6.508 17.080 21.566 28.270 hybrid contribution -1.369 -0.727 -1.044 1.869 sum -7.878 16.353 20.523 27.398 Atomic orbital electron populations 1.25682 0.96847 1.00224 0.98413 1.23263 0.95080 1.01342 1.01911 1.19156 0.84454 1.03202 0.89698 1.62051 1.04657 1.48484 1.12083 1.22127 0.86714 1.01217 0.96586 1.21315 0.99291 0.98405 0.93759 1.21429 0.97901 1.02577 0.90546 1.21009 0.80297 0.79823 0.88086 1.90671 1.34278 1.36999 1.82395 1.45931 1.45228 1.37475 1.07006 1.21364 0.93694 0.95359 0.81101 1.22139 1.00261 0.94332 0.97175 1.22491 0.99909 0.95152 0.97220 1.22938 1.00490 0.95784 0.97220 1.22057 0.92397 0.86875 0.94038 0.92605 1.44863 1.13494 1.20859 1.55021 1.19871 1.16738 0.92633 1.13765 0.93420 1.26956 1.01515 0.93454 1.05153 1.71015 1.39497 1.44034 1.05938 0.83335 0.75621 0.74337 0.73655 1.21016 1.18940 1.23590 1.22121 0.89859 0.95724 0.94500 1.23027 0.96367 0.94307 1.02115 1.21533 0.92412 1.02993 0.96837 1.22092 0.98866 0.93035 0.92918 0.74199 0.91412 0.87319 0.93491 0.88711 0.90983 0.91825 0.87571 0.75565 0.91252 0.91442 0.90379 0.90354 0.93304 0.92546 0.94216 0.95001 0.94381 0.90542 0.90289 0.91570 0.89743 0.94026 0.90242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.50 19.02 74.32 1.41 -1.09 16 2 C -0.22 -3.26 11.51 31.12 0.36 -2.90 16 3 C 0.16 2.02 5.77 84.50 0.49 2.51 16 4 N -0.55 -8.23 4.79 -907.44 -4.35 -12.57 16 5 C 0.06 0.81 5.42 86.33 0.47 1.28 16 6 C -0.09 -1.61 4.68 30.65 0.14 -1.46 16 7 C -0.10 -1.91 2.59 -11.46 -0.03 -1.94 16 8 C 0.52 13.28 6.33 87.65 0.55 13.84 16 9 O -0.56 -17.94 13.86 -3.04 -0.04 -17.99 16 10 N -0.71 -18.55 5.15 -415.80 -2.14 -20.69 16 11 C 0.17 5.39 0.75 5.19 0.00 5.40 16 12 C -0.10 -2.81 5.25 31.20 0.16 -2.64 16 13 C -0.11 -2.86 6.85 32.03 0.22 -2.64 16 14 C -0.12 -4.30 6.33 32.22 0.20 -4.10 16 15 C 0.15 5.66 3.60 46.24 0.17 5.82 16 16 H 0.06 2.02 7.98 -2.39 -0.02 2.01 16 17 N -0.62 -28.80 2.89 -663.27 -1.92 -30.72 16 18 C -0.30 -16.96 10.16 84.03 0.85 -16.11 16 19 H 0.05 2.89 8.06 -2.91 -0.02 2.87 16 20 C -0.08 -4.54 5.42 84.86 0.46 -4.08 16 21 N -0.96 -61.52 13.70 21.65 0.30 -61.22 16 22 Si 1.10 53.93 24.69 68.60 1.69 55.63 16 23 H -0.28 -13.21 6.66 99.48 0.66 -12.55 16 24 H -0.26 -11.67 6.21 99.48 0.62 -11.05 16 25 H -0.31 -15.30 7.11 99.48 0.71 -14.59 16 26 C 0.10 4.40 4.70 86.93 0.41 4.81 16 27 C -0.12 -4.24 5.78 31.97 0.18 -4.05 16 28 C -0.10 -1.61 5.26 30.65 0.16 -1.45 16 29 C 0.06 0.88 5.07 86.33 0.44 1.32 16 30 H 0.24 1.47 7.80 -4.42 -0.03 1.43 16 31 H 0.07 0.70 8.08 -2.38 -0.02 0.68 16 32 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.05 0.56 8.14 -2.38 -0.02 0.54 16 34 H 0.09 1.03 8.12 -2.39 -0.02 1.01 16 35 H 0.07 1.36 8.14 -2.38 -0.02 1.34 16 36 H 0.06 1.38 8.04 -2.39 -0.02 1.36 16 37 H 0.11 1.74 8.14 -2.38 -0.02 1.72 16 38 H 0.41 9.40 7.97 -92.70 -0.74 8.66 16 39 H 0.07 1.88 7.43 -2.39 -0.02 1.86 16 40 H 0.07 1.96 7.37 -2.39 -0.02 1.94 16 41 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 42 H 0.08 1.82 8.14 -2.39 -0.02 1.81 16 43 H 0.05 1.92 8.09 -2.39 -0.02 1.90 16 44 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 45 H 0.25 15.97 8.73 -92.71 -0.81 15.16 16 46 H 0.03 1.37 5.54 -2.39 -0.01 1.35 16 47 H 0.04 1.79 6.32 -2.39 -0.02 1.77 16 48 H 0.08 2.72 7.62 -2.39 -0.02 2.70 16 49 H 0.08 2.75 6.82 -2.39 -0.02 2.73 16 50 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 51 H 0.08 1.18 7.65 -2.39 -0.02 1.16 16 52 H 0.04 0.59 8.14 -2.39 -0.02 0.57 16 53 H 0.08 1.26 6.36 -2.39 -0.02 1.25 16 Total: -1.00 -71.56 400.81 0.18 -71.38 By element: Atomic # 1 Polarization: 23.70 SS G_CDS: -0.02 Total: 23.68 kcal Atomic # 6 Polarization: -14.16 SS G_CDS: 6.66 Total: -7.50 kcal Atomic # 7 Polarization: -117.10 SS G_CDS: -8.11 Total: -125.21 kcal Atomic # 8 Polarization: -17.94 SS G_CDS: -0.04 Total: -17.99 kcal Atomic # 14 Polarization: 53.93 SS G_CDS: 1.69 Total: 55.63 kcal Total: -71.56 0.18 -71.38 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992506814.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.708 kcal (2) G-P(sol) polarization free energy of solvation -71.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.382 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds