Wall clock time and date at job start Wed Apr 1 2020 04:24:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46902 * 109.46905 * 281.63071 * 3 2 1 5 5 C 1.46856 * 110.99619 * 190.00460 * 4 3 2 6 6 C 1.53039 * 109.51787 * 185.84053 * 5 4 3 7 7 C 1.53123 * 109.31189 * 300.79882 * 6 5 4 8 8 C 1.50697 * 109.52128 * 177.58251 * 7 6 5 9 9 O 1.21278 * 120.00200 * 359.97438 * 8 7 6 10 10 N 1.34779 * 119.99557 * 179.97438 * 8 7 6 11 11 C 1.46502 * 119.99697 * 179.97438 * 10 8 7 12 12 C 1.53589 * 112.24371 * 59.64985 * 11 10 8 13 13 C 1.54173 * 106.69866 * 122.01649 * 12 11 10 14 14 C 1.54762 * 104.36543 * 24.13488 * 13 12 11 15 15 C 1.54771 * 103.21105 * 322.66733 * 14 13 12 16 16 H 1.09000 * 111.86874 * 275.07735 * 15 14 13 17 17 N 1.46979 * 108.68743 * 150.20179 * 15 14 13 18 18 C 1.36938 * 125.57642 * 65.89888 * 17 15 14 19 19 H 1.08004 * 120.00197 * 0.02562 * 18 17 15 20 20 C 1.38811 * 120.00135 * 180.02562 * 18 17 15 21 21 N 1.31624 * 120.00169 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00342 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.46983 * 59.99787 * 22 20 18 24 24 H 1.48497 * 109.47545 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.46988 * 300.00164 * 22 20 18 26 26 C 1.47367 * 108.84713 * 245.87715 * 17 15 14 27 27 C 1.54873 * 104.81709 * 24.68696 * 26 17 15 28 28 C 1.53203 * 109.11533 * 57.63615 * 7 6 5 29 29 C 1.46846 * 111.00121 * 314.21342 * 4 3 2 30 30 H 4.40883 * 5.52077 * 179.97438 * 4 1 2 31 31 H 1.09004 * 109.46752 * 161.63739 * 3 2 1 32 32 H 1.08996 * 109.47771 * 41.63162 * 3 2 1 33 33 H 1.09000 * 109.46462 * 65.82793 * 5 4 3 34 34 H 1.09001 * 109.45242 * 305.84772 * 5 4 3 35 35 H 1.09002 * 109.50563 * 60.76214 * 6 5 4 36 36 H 1.09003 * 109.50107 * 180.84195 * 6 5 4 37 37 H 1.08997 * 109.52263 * 297.77214 * 7 6 5 38 38 H 0.97000 * 120.00497 * 359.97438 * 10 8 7 39 39 H 1.08999 * 110.01623 * 240.47639 * 12 11 10 40 40 H 1.09002 * 110.01438 * 1.86893 * 12 11 10 41 41 H 1.08998 * 109.98402 * 265.59928 * 13 12 11 42 42 H 1.08999 * 110.80015 * 143.07095 * 13 12 11 43 43 H 1.09003 * 110.66898 * 204.24029 * 14 13 12 44 44 H 1.09001 * 110.81398 * 81.16525 * 14 13 12 45 45 H 0.96991 * 120.00078 * 179.97438 * 21 20 18 46 46 H 1.08990 * 110.37335 * 143.52063 * 26 17 15 47 47 H 1.08995 * 110.36773 * 265.85543 * 26 17 15 48 48 H 1.08998 * 110.96615 * 204.80606 * 27 26 17 49 49 H 1.09001 * 110.96731 * 81.04933 * 27 26 17 50 50 H 1.08997 * 109.49417 * 182.41991 * 28 7 6 51 51 H 1.09007 * 109.52297 * 62.34418 * 28 7 6 52 52 H 1.09004 * 109.46012 * 294.17710 * 29 4 3 53 53 H 1.08997 * 109.46257 * 54.15030 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1357 -0.2783 1.3566 5 6 4.5840 -0.0537 1.4497 6 6 5.0817 -0.4915 2.8292 7 6 4.3520 0.3120 3.9093 8 6 4.7951 -0.1567 5.2712 9 8 5.6136 -1.0462 5.3698 10 7 4.2817 0.4126 6.3797 11 6 4.7121 -0.0434 7.7038 12 6 6.2241 0.1261 7.9140 13 6 6.4009 1.0255 9.1536 14 6 5.0915 0.8348 9.9563 15 6 4.0119 0.7297 8.8523 16 1 3.6645 1.7111 8.5295 17 7 2.9188 -0.1220 9.3421 18 6 2.0788 0.1788 10.3810 19 1 2.1922 1.1108 10.9147 20 6 1.0816 -0.7143 10.7481 21 7 0.9430 -1.8500 10.0974 22 14 -0.0638 -0.3044 12.1657 23 1 -0.7992 0.9492 11.8612 24 1 -1.0335 -1.4130 12.3551 25 1 0.7304 -0.1233 13.4073 26 6 2.8742 -1.3522 8.5321 27 6 4.3116 -1.5144 7.9787 28 6 2.8423 0.0989 3.7590 29 6 2.4095 0.5195 2.3528 30 1 -1.0499 0.0002 0.0000 31 1 3.0088 0.9762 -0.3238 32 1 3.0098 -0.7672 -0.6827 33 1 4.7973 1.0056 1.3061 34 1 5.0917 -0.6342 0.6794 35 1 4.8812 -1.5539 2.9681 36 1 6.1540 -0.3108 2.9034 37 1 4.5834 1.3709 3.7943 38 1 3.6273 1.1243 6.3009 39 1 6.6853 -0.8432 8.1034 40 1 6.6734 0.5883 7.0351 41 1 6.5123 2.0654 8.8465 42 1 7.2601 0.7067 9.7438 43 1 4.9040 1.6965 10.5970 44 1 5.1288 -0.0809 10.5464 45 1 0.2464 -2.4742 10.3542 46 1 2.6086 -2.2068 9.1542 47 1 2.1628 -1.2420 7.7136 48 1 4.3115 -2.0973 7.0577 49 1 4.9678 -1.9647 8.7236 50 1 2.3145 0.7020 4.4979 51 1 2.6059 -0.9540 3.9130 52 1 2.6329 1.5761 2.2048 53 1 1.3380 0.3555 2.2383 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000992506832.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:24:18 Heat of formation + Delta-G solvation = 28.223257 kcal Electronic energy + Delta-G solvation = -31718.694940 eV Core-core repulsion = 27784.216586 eV Total energy + Delta-G solvation = -3934.478355 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -41.75187 -40.38900 -39.07546 -36.04375 -35.54439 -34.72099 -33.38560 -33.01850 -31.72832 -31.40524 -28.56996 -28.41888 -27.29258 -25.73241 -24.77676 -24.13874 -22.66368 -21.64830 -21.22480 -20.42886 -20.16799 -18.99637 -18.89046 -18.20818 -17.15728 -16.95211 -16.83643 -16.26974 -16.01486 -15.82062 -15.72504 -15.34863 -15.12929 -14.85641 -14.66335 -14.55975 -14.18692 -13.89803 -13.83584 -13.72457 -13.44649 -13.22061 -12.99804 -12.92094 -12.75166 -12.63459 -12.44060 -12.27760 -12.16831 -12.06075 -11.91656 -11.73773 -11.68582 -11.56994 -11.53584 -11.45486 -11.29708 -11.23793 -11.06771 -10.70689 -10.52539 -9.89990 -9.27314 -8.85595 -7.72578 -5.17614 1.47982 1.50558 1.56831 1.71430 1.74974 1.91222 2.23697 2.51973 3.07793 3.35980 3.37977 3.45894 3.64216 3.65105 3.78892 3.86693 3.97029 3.98117 4.20766 4.25257 4.36565 4.37715 4.42095 4.42955 4.47924 4.54140 4.58526 4.59290 4.67025 4.69623 4.76143 4.82083 4.88218 4.91575 4.94636 4.97434 5.08753 5.10687 5.12050 5.18167 5.18729 5.23703 5.32931 5.38897 5.48362 5.52283 5.65471 5.73509 5.85594 6.02525 6.11017 6.31684 6.65690 6.69176 7.12679 7.35155 7.81460 8.45695 9.28412 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.011200 B = 0.003073 C = 0.002547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2499.385162 B = 9110.334714 C =10988.577318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.215 4.215 3 C 0.163 3.837 4 N -0.554 5.554 5 C 0.063 3.937 6 C -0.091 4.091 7 C -0.097 4.097 8 C 0.517 3.483 9 O -0.570 6.570 10 N -0.703 5.703 11 C 0.171 3.829 12 C -0.102 4.102 13 C -0.110 4.110 14 C -0.125 4.125 15 C 0.153 3.847 16 H 0.058 0.942 17 N -0.610 5.610 18 C -0.225 4.225 19 H 0.085 0.915 20 C -0.069 4.069 21 N -0.951 5.951 22 Si 0.977 3.023 23 H -0.277 1.277 24 H -0.299 1.299 25 H -0.278 1.278 26 C 0.165 3.835 27 C -0.128 4.128 28 C -0.103 4.103 29 C 0.064 3.936 30 H 0.240 0.760 31 H 0.074 0.926 32 H 0.109 0.891 33 H 0.055 0.945 34 H 0.095 0.905 35 H 0.052 0.948 36 H 0.079 0.921 37 H 0.120 0.880 38 H 0.407 0.593 39 H 0.057 0.943 40 H 0.069 0.931 41 H 0.081 0.919 42 H 0.077 0.923 43 H 0.066 0.934 44 H 0.047 0.953 45 H 0.244 0.756 46 H 0.069 0.931 47 H -0.018 1.018 48 H 0.057 0.943 49 H 0.061 0.939 50 H 0.076 0.924 51 H 0.049 0.951 52 H 0.051 0.949 53 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.847 9.538 -18.958 22.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.215 4.215 3 C 0.037 3.963 4 N -0.280 5.280 5 C -0.064 4.064 6 C -0.129 4.129 7 C -0.119 4.119 8 C 0.304 3.696 9 O -0.449 6.449 10 N -0.353 5.353 11 C 0.084 3.916 12 C -0.141 4.141 13 C -0.147 4.147 14 C -0.165 4.165 15 C 0.046 3.954 16 H 0.075 0.925 17 N -0.334 5.334 18 C -0.354 4.354 19 H 0.103 0.897 20 C -0.261 4.261 21 N -0.601 5.601 22 Si 0.806 3.194 23 H -0.204 1.204 24 H -0.226 1.226 25 H -0.204 1.204 26 C 0.040 3.960 27 C -0.168 4.168 28 C -0.141 4.141 29 C -0.064 4.064 30 H 0.256 0.744 31 H 0.092 0.908 32 H 0.127 0.873 33 H 0.074 0.926 34 H 0.114 0.886 35 H 0.071 0.929 36 H 0.098 0.902 37 H 0.138 0.862 38 H 0.242 0.758 39 H 0.076 0.924 40 H 0.087 0.913 41 H 0.100 0.900 42 H 0.096 0.904 43 H 0.084 0.916 44 H 0.066 0.934 45 H 0.053 0.947 46 H 0.087 0.913 47 H 0.000 1.000 48 H 0.075 0.925 49 H 0.080 0.920 50 H 0.095 0.905 51 H 0.068 0.932 52 H 0.069 0.931 53 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 8.183 8.332 -18.675 22.026 hybrid contribution -1.517 0.579 0.795 1.808 sum 6.665 8.910 -17.880 21.060 Atomic orbital electron populations 1.25681 0.96918 1.00369 0.98600 1.23340 0.95214 1.01188 1.01763 1.19172 0.84180 1.02186 0.90769 1.62011 1.04977 1.57353 1.03626 1.22133 0.86335 1.00590 0.97355 1.21337 0.99595 0.99514 0.92455 1.21411 0.96853 1.02898 0.90688 1.21069 0.80386 0.81382 0.86724 1.90660 1.35025 1.31347 1.87851 1.45909 1.45131 1.39666 1.04614 1.21439 0.94495 0.93674 0.81971 1.22159 0.93037 1.00315 0.98621 1.22292 0.97124 1.00110 0.95224 1.22804 0.95032 1.00972 0.97715 1.22048 0.88079 0.93193 0.92059 0.92457 1.44679 1.35142 1.17937 1.35636 1.19368 1.07337 1.02373 1.06339 0.89717 1.25590 1.01237 0.96995 1.02296 1.70064 1.35450 1.10848 1.43751 0.85170 0.78357 0.76607 0.79308 1.20354 1.22566 1.20387 1.21586 0.90995 0.91329 0.92103 1.23090 0.98077 0.96130 0.99457 1.21526 0.93395 1.01822 0.97377 1.22028 0.98565 0.95385 0.90440 0.74391 0.90807 0.87296 0.92646 0.88642 0.92882 0.90232 0.86244 0.75765 0.92397 0.91254 0.89997 0.90426 0.91551 0.93428 0.94656 0.91263 0.99993 0.92470 0.92002 0.90504 0.93246 0.93064 0.90935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.31 19.01 74.32 1.41 -1.90 16 2 C -0.21 -3.95 11.51 31.12 0.36 -3.59 16 3 C 0.16 2.42 5.77 84.50 0.49 2.90 16 4 N -0.55 -10.13 4.79 -907.45 -4.35 -14.47 16 5 C 0.06 0.94 5.43 86.32 0.47 1.41 16 6 C -0.09 -1.86 4.68 30.65 0.14 -1.71 16 7 C -0.10 -2.08 2.60 -11.43 -0.03 -2.11 16 8 C 0.52 15.23 6.31 87.66 0.55 15.78 16 9 O -0.57 -20.70 13.85 -3.02 -0.04 -20.74 16 10 N -0.70 -21.16 5.14 -415.78 -2.14 -23.30 16 11 C 0.17 6.03 0.73 5.19 0.00 6.03 16 12 C -0.10 -3.15 5.25 31.19 0.16 -2.99 16 13 C -0.11 -2.95 6.82 31.59 0.22 -2.73 16 14 C -0.13 -4.33 6.22 31.80 0.20 -4.14 16 15 C 0.15 5.92 3.65 46.24 0.17 6.09 16 16 H 0.06 2.11 7.99 -2.39 -0.02 2.09 16 17 N -0.61 -30.30 3.03 -663.71 -2.01 -32.31 16 18 C -0.23 -12.18 10.01 84.03 0.84 -11.34 16 19 H 0.09 4.33 7.83 -2.91 -0.02 4.31 16 20 C -0.07 -3.88 5.49 84.86 0.47 -3.41 16 21 N -0.95 -57.16 10.07 21.65 0.22 -56.94 16 22 Si 0.98 45.40 29.55 68.60 2.03 47.43 16 23 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 24 H -0.30 -14.21 7.11 99.48 0.71 -13.50 16 25 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 26 C 0.17 8.45 5.91 86.85 0.51 8.96 16 27 C -0.13 -5.46 5.77 31.89 0.18 -5.28 16 28 C -0.10 -2.32 5.26 30.67 0.16 -2.16 16 29 C 0.06 1.21 5.08 86.32 0.44 1.65 16 30 H 0.24 2.45 7.80 -4.42 -0.03 2.41 16 31 H 0.07 0.83 8.08 -2.39 -0.02 0.81 16 32 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 34 H 0.10 1.16 8.12 -2.39 -0.02 1.14 16 35 H 0.05 1.40 8.04 -2.39 -0.02 1.38 16 36 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 37 H 0.12 1.90 8.14 -2.39 -0.02 1.88 16 38 H 0.41 10.77 8.00 -92.71 -0.74 10.03 16 39 H 0.06 1.91 7.41 -2.39 -0.02 1.89 16 40 H 0.07 2.02 7.40 -2.39 -0.02 2.01 16 41 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 42 H 0.08 1.86 8.14 -2.39 -0.02 1.85 16 43 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 44 H 0.05 1.90 8.09 -2.39 -0.02 1.88 16 45 H 0.24 14.41 8.31 -92.72 -0.77 13.64 16 46 H 0.07 4.10 5.82 -2.39 -0.01 4.08 16 47 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 48 H 0.06 2.51 6.82 -2.39 -0.02 2.50 16 49 H 0.06 2.66 7.65 -2.39 -0.02 2.65 16 50 H 0.08 1.67 7.67 -2.39 -0.02 1.66 16 51 H 0.05 1.41 8.14 -2.38 -0.02 1.39 16 52 H 0.05 0.82 8.14 -2.38 -0.02 0.80 16 53 H 0.07 1.54 6.36 -2.39 -0.02 1.53 16 Total: -1.00 -69.96 406.07 0.60 -69.36 By element: Atomic # 1 Polarization: 29.34 SS G_CDS: 0.14 Total: 29.49 kcal Atomic # 6 Polarization: -5.27 SS G_CDS: 6.75 Total: 1.48 kcal Atomic # 7 Polarization: -118.74 SS G_CDS: -8.28 Total: -127.02 kcal Atomic # 8 Polarization: -20.70 SS G_CDS: -0.04 Total: -20.74 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 2.03 Total: 47.43 kcal Total: -69.96 0.60 -69.36 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992506832.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.587 kcal (2) G-P(sol) polarization free energy of solvation -69.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.364 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds