Wall clock time and date at job start Wed Apr 1 2020 04:21:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.46969 * 2 1 4 4 N 1.46504 * 109.47031 * 120.00049 * 2 1 3 5 5 C 1.35533 * 125.67470 * 305.18988 * 4 2 1 6 6 C 1.35459 * 108.86954 * 179.97438 * 5 4 2 7 7 C 1.39839 * 107.86207 * 359.74470 * 6 5 4 8 8 C 1.37650 * 125.67599 * 125.16739 * 4 2 1 9 9 C 1.46669 * 126.23787 * 0.02562 * 8 4 2 10 10 O 1.21702 * 119.99735 * 6.13160 * 9 8 4 11 11 N 1.34779 * 120.00408 * 186.12350 * 9 8 4 12 12 C 1.47377 * 125.74349 * 354.88194 * 11 9 8 13 13 C 1.55436 * 106.74204 * 181.09440 * 12 11 9 14 14 H 1.08999 * 112.50509 * 213.27627 * 13 12 11 15 15 C 1.52989 * 106.45057 * 89.98822 * 13 12 11 16 16 C 1.52604 * 111.01576 * 197.04016 * 15 13 12 17 17 C 1.53323 * 108.45197 * 62.29269 * 16 15 13 18 18 C 1.52818 * 108.15424 * 296.14757 * 17 16 15 19 19 H 1.08998 * 109.03975 * 179.62923 * 18 17 16 20 20 N 1.46492 * 109.04366 * 298.58639 * 18 17 16 21 21 C 1.36940 * 120.00000 * 274.99812 * 20 18 17 22 22 H 1.08005 * 119.99404 * 359.97438 * 21 20 18 23 23 C 1.38811 * 120.00318 * 180.02562 * 21 20 18 24 24 N 1.31613 * 119.99940 * 179.97438 * 23 21 20 25 25 Si 1.86801 * 119.99780 * 0.02562 * 23 21 20 26 26 H 1.48500 * 109.46959 * 269.99454 * 25 23 21 27 27 H 1.48489 * 109.47200 * 29.99853 * 25 23 21 28 28 H 1.48499 * 109.47038 * 150.00167 * 25 23 21 29 29 C 1.50859 * 111.66050 * 59.14740 * 18 17 16 30 30 H 1.09003 * 109.65221 * 184.89978 * 29 18 17 31 31 C 1.47937 * 125.74533 * 174.92250 * 11 9 8 32 32 H 1.09009 * 109.47109 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.47030 * 299.99880 * 1 2 3 34 34 H 1.08991 * 109.47262 * 60.00005 * 1 2 3 35 35 H 1.08999 * 109.47031 * 239.99565 * 2 1 3 36 36 H 1.09001 * 109.46859 * 180.02562 * 3 2 1 37 37 H 1.09003 * 109.47211 * 299.99705 * 3 2 1 38 38 H 1.08998 * 109.47147 * 60.00191 * 3 2 1 39 39 H 1.07998 * 125.57117 * 359.94393 * 5 4 2 40 40 H 1.07997 * 126.06874 * 180.02562 * 6 5 4 41 41 H 1.08003 * 126.45278 * 180.30616 * 7 6 5 42 42 H 1.09002 * 110.00353 * 61.77093 * 12 11 9 43 43 H 1.08996 * 110.04151 * 300.43127 * 12 11 9 44 44 H 1.08996 * 109.16891 * 76.65217 * 15 13 12 45 45 H 1.08995 * 109.17415 * 317.43372 * 15 13 12 46 46 H 1.08994 * 109.63919 * 302.60468 * 16 15 13 47 47 H 1.09001 * 109.63803 * 181.97912 * 16 15 13 48 48 H 1.08998 * 109.71967 * 176.48681 * 17 16 15 49 49 H 1.08995 * 109.76397 * 55.83937 * 17 16 15 50 50 H 0.96999 * 120.00722 * 95.00043 * 20 18 17 51 51 H 0.97008 * 120.00191 * 179.97438 * 24 23 21 52 52 H 1.09003 * 110.56841 * 323.02166 * 31 11 9 53 53 H 1.08992 * 110.56806 * 85.74308 * 31 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.6836 -0.3898 2.4746 6 6 2.3282 -1.2410 3.3082 7 6 3.0916 -2.1124 2.5250 8 6 2.8931 -1.7533 1.2087 9 6 3.4989 -2.3916 0.0353 10 8 3.3284 -1.9160 -1.0719 11 7 4.2444 -3.5046 0.1831 12 6 4.6202 -4.1250 1.4660 13 6 5.4990 -5.3610 1.1253 14 1 5.3633 -6.1776 1.8343 15 6 6.9459 -4.8656 1.0839 16 6 7.8458 -5.8643 0.3617 17 6 7.3643 -5.9910 -1.0885 18 6 5.9531 -6.5771 -1.0721 19 1 5.5937 -6.6674 -2.0972 20 7 5.9955 -7.9082 -0.4617 21 6 6.3049 -9.0021 -1.2252 22 1 6.5172 -8.8834 -2.2775 23 6 6.3445 -10.2634 -0.6470 24 7 6.6413 -11.3147 -1.3810 25 14 5.9750 -10.4687 1.1726 26 1 7.2340 -10.3451 1.9503 27 1 5.0204 -9.4169 1.6056 28 1 5.3771 -11.8074 1.4083 29 6 4.9982 -5.7081 -0.2920 30 1 4.0263 -6.1974 -0.2276 31 6 4.8238 -4.3088 -0.9151 32 1 -0.3634 -1.0278 0.0005 33 1 -0.3633 0.5138 0.8900 34 1 -0.3633 0.5138 -0.8899 35 1 1.8933 -0.5139 -0.8899 36 1 3.1300 1.4425 -0.0005 37 1 1.6767 1.9563 -0.8900 38 1 1.6766 1.9563 0.8900 39 1 1.0129 0.4000 2.7791 40 1 2.2606 -1.2485 4.3860 41 1 3.7198 -2.9143 2.8838 42 1 3.7261 -4.4401 2.0040 43 1 5.1890 -3.4183 2.0702 44 1 7.3072 -4.7306 2.1034 45 1 6.9821 -3.9092 0.5626 46 1 7.7851 -6.8348 0.8540 47 1 8.8754 -5.5066 0.3759 48 1 8.0312 -6.6528 -1.6409 49 1 7.3490 -5.0079 -1.5589 50 1 5.8044 -8.0148 0.4833 51 1 6.6694 -12.1962 -0.9768 52 1 4.1393 -4.3495 -1.7624 53 1 5.7870 -3.9008 -1.2215 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000992924821.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:21:24 Heat of formation + Delta-G solvation = 14.173857 kcal Electronic energy + Delta-G solvation = -31701.544969 eV Core-core repulsion = 27766.457387 eV Total energy + Delta-G solvation = -3935.087582 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -42.57101 -41.51200 -39.51547 -37.24942 -36.28652 -35.07881 -33.33694 -32.18849 -31.46605 -30.76534 -30.02128 -28.26887 -27.85157 -26.35357 -24.77203 -23.42052 -23.28014 -22.59411 -22.14633 -21.32535 -19.96755 -19.74808 -19.16208 -18.16290 -17.31890 -17.25785 -16.50768 -16.43559 -16.04823 -15.78262 -15.60838 -15.51541 -15.24258 -15.05005 -14.80542 -14.62783 -14.30983 -14.17009 -13.92877 -13.66621 -13.62696 -13.51519 -13.19850 -13.12339 -13.03226 -12.94795 -12.84954 -12.70108 -12.53749 -12.32729 -12.23022 -12.14286 -12.07206 -12.00820 -11.77969 -11.36140 -11.21289 -10.92945 -10.85504 -10.71534 -9.80610 -9.63963 -9.26020 -9.12848 -7.97672 -5.30049 0.48172 1.39507 1.44010 1.50791 1.52830 1.85981 2.20957 2.34310 2.52461 3.27444 3.33729 3.42132 3.59265 3.65665 3.76921 3.94449 3.99509 4.14568 4.16222 4.18587 4.23604 4.30529 4.37689 4.42601 4.46058 4.50555 4.58035 4.58665 4.62700 4.66960 4.73583 4.74305 4.77023 4.81727 4.86773 4.92399 5.00865 5.05134 5.13523 5.15299 5.17677 5.23038 5.25132 5.32463 5.38032 5.45962 5.60398 5.65600 5.83157 5.89007 6.07424 6.26102 6.35805 6.44714 7.03131 7.13308 7.88880 8.09882 9.24327 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.018900 B = 0.002633 C = 0.002577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1481.094601 B =10631.728408 C =10863.703750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.099 3.901 3 C -0.150 4.150 4 N -0.408 5.408 5 C 0.025 3.975 6 C -0.220 4.220 7 C -0.148 4.148 8 C -0.085 4.085 9 C 0.594 3.406 10 O -0.592 6.592 11 N -0.603 5.603 12 C 0.101 3.899 13 C -0.090 4.090 14 H 0.103 0.897 15 C -0.103 4.103 16 C -0.111 4.111 17 C -0.130 4.130 18 C 0.192 3.808 19 H 0.034 0.966 20 N -0.742 5.742 21 C -0.221 4.221 22 H 0.052 0.948 23 C -0.068 4.068 24 N -0.988 5.988 25 Si 0.952 3.048 26 H -0.277 1.277 27 H -0.246 1.246 28 H -0.302 1.302 29 C -0.092 4.092 30 H 0.070 0.930 31 C 0.125 3.875 32 H 0.046 0.954 33 H 0.081 0.919 34 H 0.091 0.909 35 H 0.097 0.903 36 H 0.043 0.957 37 H 0.089 0.911 38 H 0.079 0.921 39 H 0.196 0.804 40 H 0.164 0.836 41 H 0.168 0.832 42 H 0.086 0.914 43 H 0.099 0.901 44 H 0.084 0.916 45 H 0.065 0.935 46 H 0.050 0.950 47 H 0.066 0.934 48 H 0.037 0.963 49 H 0.071 0.929 50 H 0.367 0.633 51 H 0.255 0.745 52 H 0.064 0.936 53 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.877 28.243 12.575 32.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.002 4.002 3 C -0.207 4.207 4 N -0.081 5.081 5 C -0.111 4.111 6 C -0.244 4.244 7 C -0.174 4.174 8 C -0.197 4.197 9 C 0.387 3.613 10 O -0.475 6.475 11 N -0.334 5.334 12 C -0.021 4.021 13 C -0.109 4.109 14 H 0.121 0.879 15 C -0.141 4.141 16 C -0.148 4.148 17 C -0.170 4.170 18 C 0.084 3.916 19 H 0.052 0.948 20 N -0.385 5.385 21 C -0.352 4.352 22 H 0.070 0.930 23 C -0.258 4.258 24 N -0.640 5.640 25 Si 0.779 3.221 26 H -0.203 1.203 27 H -0.170 1.170 28 H -0.229 1.229 29 C -0.112 4.112 30 H 0.089 0.911 31 C 0.003 3.997 32 H 0.065 0.935 33 H 0.100 0.900 34 H 0.109 0.891 35 H 0.115 0.885 36 H 0.062 0.938 37 H 0.108 0.892 38 H 0.098 0.902 39 H 0.213 0.787 40 H 0.182 0.818 41 H 0.185 0.815 42 H 0.104 0.896 43 H 0.117 0.883 44 H 0.103 0.897 45 H 0.083 0.917 46 H 0.069 0.931 47 H 0.084 0.916 48 H 0.056 0.944 49 H 0.089 0.911 50 H 0.201 0.799 51 H 0.064 0.936 52 H 0.082 0.918 53 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -10.089 28.624 11.446 32.437 hybrid contribution 0.034 -1.168 0.200 1.185 sum -10.055 27.457 11.646 31.474 Atomic orbital electron populations 1.22113 0.91680 1.02520 1.04689 1.21978 0.96552 0.94800 0.86872 1.22078 1.00926 0.93305 1.04432 1.44369 1.32752 1.23596 1.07424 1.22506 1.03658 1.03137 0.81768 1.21200 1.03380 0.99324 1.00467 1.22246 1.02777 1.02101 0.90292 1.19882 1.06356 0.98918 0.94591 1.16985 0.77773 0.79301 0.87256 1.90698 1.63920 1.64606 1.28316 1.48243 1.50560 1.25062 1.09546 1.22991 0.99407 0.94648 0.85008 1.22370 0.95653 0.96930 0.95941 0.87875 1.21523 0.92819 0.98160 1.01574 1.21366 0.98884 0.99368 0.95207 1.22065 0.97587 0.99644 0.97670 1.19607 0.93505 0.83520 0.94978 0.94750 1.42658 1.84931 1.02608 1.08320 1.18990 1.36976 0.86193 0.93026 0.92963 1.25480 1.02864 0.95057 1.02443 1.69895 1.58023 0.98853 1.37189 0.85448 0.78669 0.77112 0.80850 1.20269 1.17037 1.22946 1.21713 0.99414 0.93916 0.96171 0.91121 1.22143 0.98615 0.89311 0.89666 0.93469 0.89999 0.89067 0.88542 0.93775 0.89174 0.90232 0.78739 0.81834 0.81477 0.89581 0.88289 0.89705 0.91665 0.93129 0.91578 0.94377 0.91094 0.79947 0.93579 0.91768 0.90104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.96 9.16 71.98 0.66 -1.30 16 2 C 0.10 1.81 3.45 44.99 0.16 1.96 16 3 C -0.15 -2.03 9.30 71.98 0.67 -1.36 16 4 N -0.41 -8.23 2.64 -488.67 -1.29 -9.52 16 5 C 0.03 0.37 10.33 83.48 0.86 1.24 16 6 C -0.22 -3.40 10.81 22.01 0.24 -3.16 16 7 C -0.15 -2.81 9.34 22.57 0.21 -2.60 16 8 C -0.08 -2.05 6.86 40.35 0.28 -1.77 16 9 C 0.59 17.17 7.81 86.44 0.68 17.84 16 10 O -0.59 -20.58 14.71 -4.35 -0.06 -20.64 16 11 N -0.60 -15.27 3.34 -813.53 -2.72 -17.99 16 12 C 0.10 1.94 4.27 87.05 0.37 2.31 16 13 C -0.09 -2.03 3.26 -9.53 -0.03 -2.06 16 14 H 0.10 2.28 7.93 -2.39 -0.02 2.26 16 15 C -0.10 -2.19 4.60 30.46 0.14 -2.05 16 16 C -0.11 -3.06 5.85 30.57 0.18 -2.88 16 17 C -0.13 -4.18 5.44 30.64 0.17 -4.02 16 18 C 0.19 6.89 2.53 44.24 0.11 7.00 16 19 H 0.03 1.37 8.06 -2.39 -0.02 1.35 16 20 N -0.74 -32.65 3.97 -326.56 -1.30 -33.95 16 21 C -0.22 -12.30 10.39 84.03 0.87 -11.43 16 22 H 0.05 3.25 8.06 -2.91 -0.02 3.22 16 23 C -0.07 -3.94 5.50 84.86 0.47 -3.47 16 24 N -0.99 -63.48 13.97 21.65 0.30 -63.18 16 25 Si 0.95 44.42 27.73 68.60 1.90 46.32 16 26 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 27 H -0.25 -10.08 6.52 99.48 0.65 -9.43 16 28 H -0.30 -14.57 7.11 99.48 0.71 -13.86 16 29 C -0.09 -2.64 2.44 -10.67 -0.03 -2.66 16 30 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 31 C 0.13 3.42 5.78 86.50 0.50 3.92 16 32 H 0.05 0.76 8.14 -2.38 -0.02 0.74 16 33 H 0.08 0.71 7.70 -2.39 -0.02 0.69 16 34 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.10 2.45 5.40 -2.39 -0.01 2.44 16 36 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 37 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 38 H 0.08 0.76 8.02 -2.39 -0.02 0.74 16 39 H 0.20 1.46 7.90 -2.91 -0.02 1.44 16 40 H 0.16 1.68 8.06 -2.91 -0.02 1.66 16 41 H 0.17 2.54 4.42 -2.91 -0.01 2.53 16 42 H 0.09 1.49 6.90 -2.39 -0.02 1.48 16 43 H 0.10 1.51 6.61 -2.39 -0.02 1.50 16 44 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 45 H 0.06 1.35 6.93 -2.39 -0.02 1.33 16 46 H 0.05 1.64 7.36 -2.39 -0.02 1.63 16 47 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 48 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 49 H 0.07 1.96 6.70 -2.39 -0.02 1.95 16 50 H 0.37 15.26 5.06 -92.71 -0.47 14.79 16 51 H 0.26 15.69 8.31 -92.70 -0.77 14.92 16 52 H 0.06 1.93 8.10 -2.39 -0.02 1.91 16 53 H 0.08 2.13 5.79 -2.39 -0.01 2.11 16 Total: -1.00 -74.38 396.67 3.71 -70.66 By element: Atomic # 1 Polarization: 32.40 SS G_CDS: 0.38 Total: 32.78 kcal Atomic # 6 Polarization: -10.99 SS G_CDS: 6.50 Total: -4.49 kcal Atomic # 7 Polarization: -119.63 SS G_CDS: -5.00 Total: -124.63 kcal Atomic # 8 Polarization: -20.58 SS G_CDS: -0.06 Total: -20.64 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 1.90 Total: 46.32 kcal Total: -74.38 3.71 -70.66 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992924821.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.836 kcal (2) G-P(sol) polarization free energy of solvation -74.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.663 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds