Wall clock time and date at job start Wed Apr 1 2020 03:39:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52998 * 109.47186 * 2 1 4 4 C 1.53000 * 109.47707 * 239.99671 * 2 1 3 5 5 H 1.09001 * 109.46958 * 55.50798 * 4 2 1 6 6 C 1.50698 * 109.46823 * 295.51560 * 4 2 1 7 7 O 1.21284 * 120.00407 * 332.80497 * 6 4 2 8 8 N 1.34781 * 120.00220 * 152.81325 * 6 4 2 9 9 C 1.47424 * 125.64331 * 354.17247 * 8 6 4 10 10 C 1.55135 * 104.71909 * 155.81728 * 9 8 6 11 11 H 1.08995 * 111.22484 * 279.17728 * 10 9 8 12 12 N 1.46507 * 110.90288 * 155.27394 * 10 9 8 13 13 C 1.36933 * 119.99819 * 92.98046 * 12 10 9 14 14 H 1.08005 * 120.00533 * 359.97438 * 13 12 10 15 15 C 1.38813 * 120.00191 * 180.02562 * 13 12 10 16 16 N 1.31621 * 119.99766 * 359.97438 * 15 13 12 17 17 Si 1.86795 * 120.00435 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47405 * 89.99333 * 17 15 13 19 19 H 1.48499 * 109.47163 * 209.99794 * 17 15 13 20 20 H 1.48505 * 109.46871 * 329.99580 * 17 15 13 21 21 C 1.55151 * 101.48455 * 37.29826 * 10 9 8 22 22 C 1.53002 * 110.72070 * 205.96938 * 21 10 9 23 23 C 1.52997 * 110.87759 * 82.76406 * 21 10 9 24 24 C 1.47018 * 125.64904 * 174.48266 * 8 6 4 25 25 C 1.50692 * 109.47392 * 175.51035 * 4 2 1 26 26 C 1.38654 * 120.79243 * 59.72369 * 25 4 2 27 27 C 1.38195 * 119.16260 * 179.75410 * 26 25 4 28 28 N 1.31876 * 120.76820 * 0.53217 * 27 26 25 29 29 C 1.31864 * 121.72187 * 359.73545 * 28 27 26 30 30 C 1.38206 * 120.76816 * 359.97438 * 29 28 27 31 31 H 1.08999 * 109.47323 * 185.16738 * 1 2 3 32 32 H 1.08994 * 109.47686 * 305.17007 * 1 2 3 33 33 H 1.09008 * 109.46939 * 65.17156 * 1 2 3 34 34 H 1.08999 * 109.47095 * 119.99592 * 2 1 3 35 35 H 1.08999 * 109.46771 * 299.99791 * 3 2 1 36 36 H 1.09004 * 109.47291 * 59.99650 * 3 2 1 37 37 H 1.09000 * 109.47550 * 179.97438 * 3 2 1 38 38 H 1.08994 * 110.37012 * 274.74814 * 9 8 6 39 39 H 1.09005 * 110.37070 * 37.07441 * 9 8 6 40 40 H 0.96996 * 120.00075 * 272.97259 * 12 10 9 41 41 H 0.96999 * 120.00426 * 179.97438 * 16 15 13 42 42 H 1.09003 * 109.47523 * 174.97513 * 22 21 10 43 43 H 1.09000 * 109.46819 * 294.97490 * 22 21 10 44 44 H 1.09006 * 109.47242 * 54.96997 * 22 21 10 45 45 H 1.09000 * 109.47007 * 304.93993 * 23 21 10 46 46 H 1.09000 * 109.46979 * 64.93494 * 23 21 10 47 47 H 1.08997 * 109.47509 * 184.93465 * 23 21 10 48 48 H 1.09002 * 109.88709 * 300.43536 * 24 8 6 49 49 H 1.08994 * 109.88535 * 61.60555 * 24 8 6 50 50 H 1.08005 * 120.41294 * 359.97438 * 26 25 4 51 51 H 1.08006 * 119.61713 * 180.24460 * 27 26 25 52 52 H 1.07998 * 119.61969 * 180.02562 * 29 28 27 53 53 H 1.07995 * 120.42228 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 1 1.6125 -0.2561 -2.1374 6 6 1.6305 -2.1705 -1.1948 7 8 1.4540 -2.7111 -0.1235 8 7 1.4606 -2.8662 -2.3366 9 6 1.5224 -2.3082 -3.6998 10 6 1.8888 -3.5149 -4.6033 11 1 2.9595 -3.7172 -4.5765 12 7 1.4329 -3.2958 -5.9783 13 6 2.2786 -2.7375 -6.8992 14 1 3.2816 -2.4582 -6.6120 15 6 1.8465 -2.5294 -8.2019 16 7 0.6240 -2.8692 -8.5519 17 14 3.0003 -1.7684 -9.4584 18 1 3.7612 -2.8424 -10.1460 19 1 2.2103 -1.0043 -10.4570 20 1 3.9468 -0.8535 -8.7711 21 6 1.0893 -4.6604 -3.9282 22 6 1.7465 -6.0144 -4.2032 23 6 -0.3660 -4.6614 -4.4004 24 6 1.1765 -4.3057 -2.4287 25 6 3.5429 -0.6257 -1.3060 26 6 4.3260 -1.1415 -0.2847 27 6 5.7014 -1.0399 -0.3738 28 7 6.2687 -0.4518 -1.4088 29 6 5.5554 0.0547 -2.3955 30 6 4.1752 -0.0149 -2.3782 31 1 -0.3634 -1.0235 0.0926 32 1 -0.3634 0.5919 0.8400 33 1 -0.3633 0.4316 -0.9328 34 1 1.8932 -0.5138 0.8900 35 1 1.6766 1.9562 -0.8900 36 1 1.6765 1.9564 0.8900 37 1 3.1299 1.4425 0.0005 38 1 0.5542 -1.8973 -3.9858 39 1 2.2942 -1.5409 -3.7610 40 1 0.5320 -3.5463 -6.2363 41 1 0.3219 -2.7235 -9.4621 42 1 1.2220 -6.7923 -3.6482 43 1 1.6964 -6.2326 -5.2699 44 1 2.7893 -5.9830 -3.8874 45 1 -0.8062 -3.6801 -4.2231 46 1 -0.4021 -4.8886 -5.4659 47 1 -0.9265 -5.4162 -3.8488 48 1 1.9804 -4.8731 -1.9598 49 1 0.2284 -4.5285 -1.9394 50 1 3.8671 -1.6198 0.5680 51 1 6.3186 -1.4427 0.4157 52 1 6.0555 0.5286 -3.2271 53 1 3.5965 0.4014 -3.1894 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996188235.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:39:24 Heat of formation + Delta-G solvation = -16.186041 kcal Electronic energy + Delta-G solvation = -32266.103667 eV Core-core repulsion = 28329.699581 eV Total energy + Delta-G solvation = -3936.404086 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -42.00743 -40.87159 -39.57524 -37.10662 -35.87514 -34.67663 -33.49211 -32.65419 -32.15855 -29.56904 -29.11909 -28.29306 -28.03113 -26.95948 -25.80064 -24.53112 -23.60184 -23.05266 -21.54634 -20.19864 -19.86605 -19.19334 -18.22897 -17.97678 -17.20477 -17.02299 -16.71663 -16.51198 -16.15922 -15.75081 -15.50238 -15.36885 -15.05293 -14.83916 -14.59817 -14.52432 -14.41705 -14.33455 -14.13463 -13.63105 -13.46337 -13.30168 -13.21472 -12.98482 -12.97687 -12.84931 -12.77727 -12.63322 -12.60462 -12.21336 -12.09619 -12.06173 -11.95809 -11.86902 -11.63830 -11.54052 -11.35316 -11.19372 -10.89703 -10.46704 -10.37691 -10.11135 -9.68851 -9.00342 -7.92094 -5.20670 0.17322 0.17865 1.50694 1.51314 1.52536 1.59650 1.92476 2.58529 2.81504 3.28952 3.38969 3.43465 3.57388 3.61454 3.70346 3.77898 3.85501 3.91321 4.06378 4.11864 4.14507 4.19605 4.28430 4.32041 4.39198 4.42021 4.44535 4.62611 4.63682 4.68010 4.75696 4.76384 4.81142 4.83508 4.86687 4.92952 4.94168 4.99653 5.00975 5.03388 5.11979 5.16900 5.17983 5.27053 5.29478 5.34585 5.40238 5.43983 5.48193 5.57007 5.73177 6.29169 6.47434 6.99486 7.05335 7.38244 8.09474 8.35243 9.30677 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.009263 B = 0.004012 C = 0.003393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3022.029161 B = 6976.976196 C = 8250.756333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.070 4.070 3 C -0.140 4.140 4 C -0.058 4.058 5 H 0.106 0.894 6 C 0.538 3.462 7 O -0.567 6.567 8 N -0.609 5.609 9 C 0.086 3.914 10 C 0.177 3.823 11 H 0.058 0.942 12 N -0.717 5.717 13 C -0.239 4.239 14 H 0.076 0.924 15 C -0.064 4.064 16 N -0.965 5.965 17 Si 0.963 3.037 18 H -0.292 1.292 19 H -0.299 1.299 20 H -0.267 1.267 21 C -0.080 4.080 22 C -0.125 4.125 23 C -0.127 4.127 24 C 0.123 3.877 25 C -0.027 4.027 26 C -0.167 4.167 27 C 0.094 3.906 28 N -0.507 5.507 29 C 0.094 3.906 30 C -0.165 4.165 31 H 0.039 0.961 32 H 0.074 0.926 33 H 0.059 0.941 34 H 0.074 0.926 35 H 0.062 0.938 36 H 0.071 0.929 37 H 0.049 0.951 38 H 0.063 0.937 39 H 0.073 0.927 40 H 0.382 0.618 41 H 0.250 0.750 42 H 0.074 0.926 43 H 0.048 0.952 44 H 0.056 0.944 45 H 0.047 0.953 46 H 0.049 0.951 47 H 0.073 0.927 48 H 0.068 0.932 49 H 0.070 0.930 50 H 0.136 0.864 51 H 0.176 0.824 52 H 0.174 0.826 53 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.823 4.504 17.148 17.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.089 4.089 3 C -0.197 4.197 4 C -0.079 4.079 5 H 0.124 0.876 6 C 0.327 3.673 7 O -0.447 6.447 8 N -0.342 5.342 9 C -0.040 4.040 10 C 0.066 3.934 11 H 0.076 0.924 12 N -0.358 5.358 13 C -0.371 4.371 14 H 0.094 0.906 15 C -0.257 4.257 16 N -0.615 5.615 17 Si 0.793 3.207 18 H -0.220 1.220 19 H -0.226 1.226 20 H -0.192 1.192 21 C -0.081 4.081 22 C -0.182 4.182 23 C -0.184 4.184 24 C 0.001 3.999 25 C -0.036 4.036 26 C -0.186 4.186 27 C -0.062 4.062 28 N -0.217 5.217 29 C -0.062 4.062 30 C -0.185 4.185 31 H 0.058 0.942 32 H 0.093 0.907 33 H 0.078 0.922 34 H 0.092 0.908 35 H 0.082 0.918 36 H 0.090 0.910 37 H 0.069 0.931 38 H 0.081 0.919 39 H 0.092 0.908 40 H 0.218 0.782 41 H 0.059 0.941 42 H 0.093 0.907 43 H 0.067 0.933 44 H 0.075 0.925 45 H 0.066 0.934 46 H 0.068 0.932 47 H 0.092 0.908 48 H 0.086 0.914 49 H 0.088 0.912 50 H 0.154 0.846 51 H 0.193 0.807 52 H 0.192 0.808 53 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 3.798 4.388 17.635 18.566 hybrid contribution -0.887 0.108 -1.251 1.537 sum 2.912 4.495 16.385 17.238 Atomic orbital electron populations 1.21843 0.94296 1.01469 1.02796 1.20946 0.96316 0.96425 0.95176 1.21809 1.00717 0.94210 1.02984 1.20460 0.92409 0.92148 1.02925 0.87569 1.20326 0.76239 0.88557 0.82184 1.90643 1.53073 1.71782 1.29215 1.48507 1.69366 1.10037 1.06263 1.23241 1.01232 0.99153 0.80397 1.21464 0.96444 0.91566 0.83972 0.92375 1.42514 1.14951 1.73430 1.04895 1.19569 0.95401 1.31488 0.90596 0.90625 1.25394 0.97826 1.03228 0.99230 1.69787 1.18113 1.55084 1.18496 0.85303 0.78181 0.77987 0.79271 1.21982 1.22583 1.19220 1.21820 0.96847 0.96557 0.92895 1.21652 1.00095 0.94811 1.01663 1.21637 0.94059 1.01661 1.01069 1.22030 1.01129 0.80823 0.95961 1.19814 0.93845 0.95651 0.94295 1.22136 0.95355 1.01150 1.00002 1.23083 0.92551 0.94665 0.95918 1.67719 1.41792 1.09818 1.02356 1.23107 0.91103 0.95412 0.96578 1.22276 0.96531 1.00788 0.98882 0.94181 0.90655 0.92190 0.90754 0.91849 0.90971 0.93144 0.91886 0.90838 0.78242 0.94073 0.90723 0.93277 0.92516 0.93435 0.93175 0.90765 0.91384 0.91189 0.84603 0.80693 0.80845 0.83386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.95 8.90 71.98 0.64 -2.31 16 2 C -0.07 -1.43 1.96 -10.80 -0.02 -1.45 16 3 C -0.14 -2.32 8.88 71.98 0.64 -1.69 16 4 C -0.06 -1.36 1.35 -12.29 -0.02 -1.38 16 5 H 0.11 2.38 6.91 -2.39 -0.02 2.37 16 6 C 0.54 15.55 5.86 87.66 0.51 16.06 16 7 O -0.57 -18.91 15.72 -3.04 -0.05 -18.95 16 8 N -0.61 -17.90 3.32 -811.34 -2.70 -20.60 16 9 C 0.09 2.70 5.75 86.93 0.50 3.20 16 10 C 0.18 6.28 2.97 46.46 0.14 6.42 16 11 H 0.06 2.19 7.99 -2.39 -0.02 2.17 16 12 N -0.72 -32.16 5.15 -316.00 -1.63 -33.79 16 13 C -0.24 -12.04 9.96 84.03 0.84 -11.20 16 14 H 0.08 3.68 7.83 -2.91 -0.02 3.65 16 15 C -0.06 -3.40 5.50 84.86 0.47 -2.94 16 16 N -0.96 -55.24 13.06 21.65 0.28 -54.95 16 17 Si 0.96 43.43 29.55 68.60 2.03 45.46 16 18 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 19 H -0.30 -13.77 7.11 99.48 0.71 -13.06 16 20 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 21 C -0.08 -2.37 0.85 -50.99 -0.04 -2.41 16 22 C -0.12 -3.40 8.48 71.98 0.61 -2.79 16 23 C -0.13 -3.80 7.54 71.98 0.54 -3.25 16 24 C 0.12 3.47 6.05 86.73 0.52 4.00 16 25 C -0.03 -0.63 3.31 -19.67 -0.07 -0.70 16 26 C -0.17 -3.81 9.00 22.36 0.20 -3.61 16 27 C 0.09 2.08 11.18 84.68 0.95 3.03 16 28 N -0.51 -12.62 10.36 -195.84 -2.03 -14.65 16 29 C 0.09 2.13 11.18 84.68 0.95 3.08 16 30 C -0.17 -3.66 9.28 22.36 0.21 -3.45 16 31 H 0.04 0.97 7.05 -2.39 -0.02 0.96 16 32 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.06 1.13 8.14 -2.38 -0.02 1.11 16 34 H 0.07 1.69 7.18 -2.39 -0.02 1.67 16 35 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.07 1.01 8.14 -2.38 -0.02 0.99 16 37 H 0.05 0.90 7.08 -2.39 -0.02 0.88 16 38 H 0.06 2.11 7.71 -2.39 -0.02 2.09 16 39 H 0.07 2.24 6.88 -2.38 -0.02 2.22 16 40 H 0.38 18.40 5.46 -92.71 -0.51 17.89 16 41 H 0.25 14.08 8.31 -92.71 -0.77 13.31 16 42 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 43 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 44 H 0.06 1.49 8.13 -2.38 -0.02 1.47 16 45 H 0.05 1.48 7.44 -2.39 -0.02 1.46 16 46 H 0.05 1.74 6.76 -2.39 -0.02 1.72 16 47 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 48 H 0.07 1.88 7.82 -2.39 -0.02 1.86 16 49 H 0.07 1.91 7.84 -2.39 -0.02 1.90 16 50 H 0.14 3.08 7.71 -2.91 -0.02 3.06 16 51 H 0.18 2.90 8.06 -2.91 -0.02 2.87 16 52 H 0.17 3.14 8.06 -2.91 -0.02 3.12 16 53 H 0.15 2.90 8.01 -2.91 -0.02 2.88 16 Total: -1.00 -62.09 415.71 3.86 -58.23 By element: Atomic # 1 Polarization: 40.25 SS G_CDS: 0.38 Total: 40.63 kcal Atomic # 6 Polarization: -8.95 SS G_CDS: 7.57 Total: -1.38 kcal Atomic # 7 Polarization: -117.92 SS G_CDS: -6.07 Total: -123.99 kcal Atomic # 8 Polarization: -18.91 SS G_CDS: -0.05 Total: -18.95 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.46 kcal Total: -62.09 3.86 -58.23 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996188235.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.047 kcal (2) G-P(sol) polarization free energy of solvation -62.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds