Wall clock time and date at job start Wed Apr 1 2020 03:39:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47000 * 2 1 4 4 C 1.52994 * 109.47385 * 120.00352 * 2 1 3 5 5 H 1.09003 * 109.47223 * 302.26409 * 4 2 1 6 6 C 1.50697 * 109.47397 * 62.26692 * 4 2 1 7 7 O 1.21284 * 119.99572 * 35.59029 * 6 4 2 8 8 N 1.34769 * 120.00433 * 215.58823 * 6 4 2 9 9 C 1.47429 * 125.64690 * 354.70416 * 8 6 4 10 10 C 1.55135 * 104.72238 * 155.81468 * 9 8 6 11 11 H 1.08998 * 110.90234 * 155.27125 * 10 9 8 12 12 N 1.46501 * 111.18740 * 279.18582 * 10 9 8 13 13 C 1.36934 * 120.00082 * 267.18787 * 12 10 9 14 14 H 1.07995 * 120.00357 * 0.02562 * 13 12 10 15 15 C 1.38814 * 119.99821 * 180.02562 * 13 12 10 16 16 N 1.31625 * 119.99932 * 180.02562 * 15 13 12 17 17 Si 1.86799 * 120.00112 * 359.97438 * 15 13 12 18 18 H 1.48502 * 109.47149 * 90.00478 * 17 15 13 19 19 H 1.48496 * 109.47268 * 210.00578 * 17 15 13 20 20 H 1.48504 * 109.47414 * 330.00523 * 17 15 13 21 21 C 1.55151 * 101.48585 * 37.29222 * 10 9 8 22 22 C 1.53003 * 110.71983 * 205.96749 * 21 10 9 23 23 C 1.53004 * 110.87362 * 82.76788 * 21 10 9 24 24 C 1.47024 * 125.65005 * 175.00415 * 8 6 4 25 25 C 1.50704 * 109.47080 * 182.26688 * 4 2 1 26 26 C 1.38646 * 120.79004 * 299.71999 * 25 4 2 27 27 C 1.38203 * 119.16406 * 179.80049 * 26 25 4 28 28 N 1.31874 * 120.76152 * 0.48382 * 27 26 25 29 29 C 1.31869 * 121.72666 * 359.74468 * 28 27 26 30 30 C 1.38207 * 120.76257 * 0.02562 * 29 28 27 31 31 H 1.08998 * 109.47677 * 63.37941 * 1 2 3 32 32 H 1.08995 * 109.46984 * 183.38236 * 1 2 3 33 33 H 1.09006 * 109.46774 * 303.37987 * 1 2 3 34 34 H 1.09002 * 109.47081 * 240.00435 * 2 1 3 35 35 H 1.08998 * 109.46969 * 180.02562 * 3 2 1 36 36 H 1.09000 * 109.47682 * 300.00177 * 3 2 1 37 37 H 1.09001 * 109.47099 * 60.00775 * 3 2 1 38 38 H 1.08996 * 110.36124 * 274.74159 * 9 8 6 39 39 H 1.09001 * 110.36517 * 37.06499 * 9 8 6 40 40 H 0.96997 * 119.99705 * 87.19662 * 12 10 9 41 41 H 0.96998 * 119.99767 * 179.97438 * 16 15 13 42 42 H 1.08995 * 109.47238 * 174.97804 * 22 21 10 43 43 H 1.08993 * 109.47177 * 294.97854 * 22 21 10 44 44 H 1.09009 * 109.46718 * 54.97822 * 22 21 10 45 45 H 1.09000 * 109.46852 * 304.93777 * 23 21 10 46 46 H 1.08998 * 109.46895 * 64.93311 * 23 21 10 47 47 H 1.08993 * 109.46965 * 184.93018 * 23 21 10 48 48 H 1.09004 * 109.88337 * 300.44070 * 24 8 6 49 49 H 1.09000 * 109.88441 * 61.45503 * 24 8 6 50 50 H 1.08004 * 120.42090 * 0.02562 * 26 25 4 51 51 H 1.07999 * 119.62356 * 180.20754 * 27 26 25 52 52 H 1.07994 * 119.61913 * 180.02562 * 29 28 27 53 53 H 1.07999 * 120.41867 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 1 1.6439 -0.2315 2.1387 6 6 1.5842 -2.1574 1.2213 7 8 1.5175 -2.7521 0.1664 8 7 1.2507 -2.7809 2.3686 9 6 1.3889 -2.2178 3.7241 10 6 0.3493 -2.9889 4.5793 11 1 0.6352 -2.9903 5.6311 12 7 -0.9957 -2.4355 4.4036 13 6 -1.4567 -1.4715 5.2598 14 1 -0.8286 -1.1187 6.0644 15 6 -2.7314 -0.9475 5.0936 16 7 -3.1743 -0.0205 5.9164 17 14 -3.8176 -1.5571 3.7015 18 1 -4.6234 -2.7124 4.1720 19 1 -4.7250 -0.4649 3.2670 20 1 -2.9679 -1.9788 2.5589 21 6 0.4478 -4.4142 3.9743 22 6 -0.8620 -5.1792 4.1750 23 6 1.6211 -5.1849 4.5828 24 6 0.6945 -4.1376 2.4762 25 6 3.5460 -0.6728 1.2775 26 6 4.2936 -1.2362 0.2548 27 6 5.6728 -1.1687 0.3128 28 7 6.2774 -0.5860 1.3296 29 6 5.5988 -0.0438 2.3218 30 6 4.2169 -0.0688 2.3298 31 1 -0.3634 0.4605 -0.9187 32 1 -0.3633 -1.0258 0.0606 33 1 -0.3633 0.5655 0.8582 34 1 1.8933 -0.5138 -0.8900 35 1 3.1299 1.4425 -0.0005 36 1 1.6766 1.9564 -0.8899 37 1 1.6767 1.9563 0.8901 38 1 2.3964 -2.3870 4.1041 39 1 1.1589 -1.1524 3.7176 40 1 -1.5598 -2.7522 3.6808 41 1 -4.0649 0.3459 5.8000 42 1 -0.8025 -6.1413 3.6665 43 1 -1.0288 -5.3408 5.2399 44 1 -1.6879 -4.6001 3.7617 45 1 2.5384 -4.6099 4.4558 46 1 1.4378 -5.3465 5.6450 47 1 1.7230 -6.1472 4.0812 48 1 -0.2461 -4.1972 1.9285 49 1 1.4034 -4.8618 2.0750 50 1 3.8044 -1.7185 -0.5786 51 1 6.2624 -1.6022 -0.4815 52 1 6.1288 0.4251 3.1375 53 1 3.6667 0.3766 3.1455 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996188237.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:39:29 Heat of formation + Delta-G solvation = -13.066025 kcal Electronic energy + Delta-G solvation = -32637.785337 eV Core-core repulsion = 28701.516545 eV Total energy + Delta-G solvation = -3936.268792 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.01364 -40.91661 -39.59690 -37.13343 -35.80983 -34.70659 -33.53395 -33.02687 -32.14160 -29.81895 -29.53265 -28.12544 -28.07573 -26.97989 -25.45051 -24.49831 -23.56262 -23.01986 -21.62720 -20.59927 -19.94112 -19.37939 -18.26994 -17.99242 -17.25690 -16.92795 -16.63407 -16.52377 -16.33045 -16.02712 -15.51002 -15.19970 -15.05625 -14.94004 -14.69299 -14.58705 -14.45722 -14.20225 -13.89438 -13.85396 -13.61103 -13.37696 -13.30738 -13.14619 -13.05820 -12.93699 -12.84418 -12.70045 -12.61893 -12.28552 -12.25914 -12.03309 -11.95162 -11.89050 -11.66508 -11.60201 -11.35768 -11.19166 -10.98673 -10.46768 -10.37464 -10.09449 -9.75980 -9.23727 -8.02024 -5.33206 0.18191 0.19363 1.33048 1.34865 1.40144 1.51632 1.96822 2.45005 2.82988 3.26641 3.28623 3.41896 3.51746 3.59236 3.60615 3.68447 3.76861 3.88382 3.96901 4.03394 4.15711 4.19768 4.24960 4.26664 4.35888 4.42861 4.54876 4.56499 4.63750 4.67282 4.68749 4.71839 4.82903 4.85596 4.86033 4.88858 4.89608 4.94054 5.00453 5.01930 5.07209 5.09978 5.23671 5.24654 5.27837 5.27891 5.37179 5.42220 5.49108 5.74604 5.80364 6.22613 6.48175 7.00495 7.06181 7.07713 7.84089 8.01389 9.19053 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.010680 B = 0.004244 C = 0.003714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2621.042336 B = 6596.367604 C = 7537.825137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.069 4.069 3 C -0.138 4.138 4 C -0.059 4.059 5 H 0.102 0.898 6 C 0.536 3.464 7 O -0.575 6.575 8 N -0.606 5.606 9 C 0.078 3.922 10 C 0.173 3.827 11 H 0.088 0.912 12 N -0.736 5.736 13 C -0.216 4.216 14 H 0.073 0.927 15 C -0.048 4.048 16 N -0.976 5.976 17 Si 0.930 3.070 18 H -0.279 1.279 19 H -0.300 1.300 20 H -0.268 1.268 21 C -0.079 4.079 22 C -0.127 4.127 23 C -0.125 4.125 24 C 0.118 3.882 25 C -0.028 4.028 26 C -0.166 4.166 27 C 0.095 3.905 28 N -0.505 5.505 29 C 0.098 3.902 30 C -0.163 4.163 31 H 0.074 0.926 32 H 0.030 0.970 33 H 0.052 0.948 34 H 0.076 0.924 35 H 0.057 0.943 36 H 0.070 0.930 37 H 0.059 0.941 38 H 0.089 0.911 39 H 0.070 0.930 40 H 0.362 0.638 41 H 0.256 0.744 42 H 0.072 0.928 43 H 0.064 0.936 44 H 0.034 0.966 45 H 0.059 0.941 46 H 0.071 0.929 47 H 0.071 0.929 48 H 0.044 0.956 49 H 0.073 0.927 50 H 0.131 0.869 51 H 0.175 0.825 52 H 0.182 0.818 53 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.115 -4.334 -8.481 18.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.088 4.088 3 C -0.195 4.195 4 C -0.080 4.080 5 H 0.120 0.880 6 C 0.326 3.674 7 O -0.455 6.455 8 N -0.337 5.337 9 C -0.047 4.047 10 C 0.063 3.937 11 H 0.106 0.894 12 N -0.377 5.377 13 C -0.347 4.347 14 H 0.091 0.909 15 C -0.240 4.240 16 N -0.627 5.627 17 Si 0.760 3.240 18 H -0.206 1.206 19 H -0.227 1.227 20 H -0.194 1.194 21 C -0.081 4.081 22 C -0.185 4.185 23 C -0.182 4.182 24 C -0.004 4.004 25 C -0.036 4.036 26 C -0.186 4.186 27 C -0.061 4.061 28 N -0.215 5.215 29 C -0.059 4.059 30 C -0.182 4.182 31 H 0.093 0.907 32 H 0.049 0.951 33 H 0.071 0.929 34 H 0.095 0.905 35 H 0.076 0.924 36 H 0.089 0.911 37 H 0.078 0.922 38 H 0.107 0.893 39 H 0.088 0.912 40 H 0.195 0.805 41 H 0.065 0.935 42 H 0.091 0.909 43 H 0.084 0.916 44 H 0.053 0.947 45 H 0.079 0.921 46 H 0.090 0.910 47 H 0.089 0.911 48 H 0.063 0.937 49 H 0.091 0.909 50 H 0.148 0.852 51 H 0.192 0.808 52 H 0.199 0.801 53 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 16.982 -4.441 -8.896 19.679 hybrid contribution -2.480 -0.068 -0.807 2.609 sum 14.502 -4.510 -9.703 18.022 Atomic orbital electron populations 1.21849 0.95370 1.00700 1.02646 1.20947 0.95299 0.96957 0.95597 1.21784 1.00968 0.93845 1.02892 1.20423 0.92782 0.92322 1.02519 0.87974 1.20300 0.76505 0.88495 0.82131 1.90627 1.56071 1.68007 1.30831 1.48484 1.61934 1.16619 1.06704 1.23341 1.00531 0.99380 0.81493 1.21623 0.83708 0.90524 0.97878 0.89400 1.42726 1.14121 1.46356 1.34535 1.19042 0.97629 1.11450 1.06619 0.90935 1.25174 0.98841 0.99449 1.00550 1.69824 1.18990 1.32832 1.41077 0.85791 0.79689 0.77512 0.80981 1.20550 1.22709 1.19387 1.21920 0.97826 0.95675 0.92681 1.21646 0.94938 0.99353 1.02543 1.21714 0.95500 0.99629 1.01372 1.22059 0.97697 0.83620 0.97059 1.19778 0.93219 0.95925 0.94726 1.22124 0.95712 1.00887 0.99909 1.23034 0.91815 0.95030 0.96234 1.67732 1.41852 1.09520 1.02381 1.23178 0.91223 0.95007 0.96444 1.22293 0.96272 1.00647 0.99020 0.90700 0.95119 0.92874 0.90525 0.92369 0.91083 0.92156 0.89317 0.91167 0.80470 0.93527 0.90924 0.91648 0.94685 0.92149 0.91037 0.91052 0.93736 0.90894 0.85156 0.80840 0.80094 0.83053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.21 9.03 71.98 0.65 -3.56 16 2 C -0.07 -1.74 2.03 -10.80 -0.02 -1.76 16 3 C -0.14 -2.81 8.91 71.98 0.64 -2.17 16 4 C -0.06 -1.56 1.64 -12.29 -0.02 -1.58 16 5 H 0.10 2.75 6.17 -2.39 -0.01 2.73 16 6 C 0.54 17.05 5.43 87.66 0.48 17.53 16 7 O -0.57 -21.13 15.78 -3.04 -0.05 -21.18 16 8 N -0.61 -18.48 3.32 -811.33 -2.70 -21.18 16 9 C 0.08 2.22 6.12 86.93 0.53 2.75 16 10 C 0.17 5.48 2.96 46.46 0.14 5.62 16 11 H 0.09 2.75 7.99 -2.39 -0.02 2.73 16 12 N -0.74 -30.62 4.37 -316.02 -1.38 -32.00 16 13 C -0.22 -11.09 10.44 84.03 0.88 -10.21 16 14 H 0.07 3.98 8.06 -2.91 -0.02 3.96 16 15 C -0.05 -2.66 5.50 84.86 0.47 -2.20 16 16 N -0.98 -59.38 13.97 21.65 0.30 -59.08 16 17 Si 0.93 44.60 27.73 68.60 1.90 46.50 16 18 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 19 H -0.30 -14.79 7.11 99.48 0.71 -14.09 16 20 H -0.27 -12.23 6.52 99.48 0.65 -11.59 16 21 C -0.08 -2.06 0.80 -50.99 -0.04 -2.10 16 22 C -0.13 -3.39 8.15 71.98 0.59 -2.80 16 23 C -0.12 -2.42 8.44 71.98 0.61 -1.81 16 24 C 0.12 3.43 6.04 86.73 0.52 3.95 16 25 C -0.03 -0.64 3.41 -19.67 -0.07 -0.71 16 26 C -0.17 -3.80 8.96 22.36 0.20 -3.60 16 27 C 0.09 1.97 11.18 84.68 0.95 2.92 16 28 N -0.51 -11.15 10.36 -195.84 -2.03 -13.18 16 29 C 0.10 1.85 11.18 84.68 0.95 2.79 16 30 C -0.16 -3.19 9.76 22.36 0.22 -2.97 16 31 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 32 H 0.03 1.02 6.94 -2.39 -0.02 1.00 16 33 H 0.05 1.56 8.14 -2.38 -0.02 1.54 16 34 H 0.08 2.03 7.21 -2.39 -0.02 2.01 16 35 H 0.06 1.15 7.15 -2.39 -0.02 1.13 16 36 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 38 H 0.09 2.08 7.71 -2.39 -0.02 2.06 16 39 H 0.07 2.21 6.61 -2.39 -0.02 2.20 16 40 H 0.36 15.53 4.19 -92.71 -0.39 15.14 16 41 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 42 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 43 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 44 H 0.03 1.11 6.34 -2.38 -0.02 1.09 16 45 H 0.06 1.13 7.44 -2.39 -0.02 1.11 16 46 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 47 H 0.07 1.19 8.14 -2.39 -0.02 1.18 16 48 H 0.04 1.45 7.82 -2.38 -0.02 1.44 16 49 H 0.07 1.97 7.85 -2.39 -0.02 1.95 16 50 H 0.13 3.16 7.30 -2.91 -0.02 3.14 16 51 H 0.17 2.69 8.06 -2.91 -0.02 2.67 16 52 H 0.18 2.34 8.06 -2.91 -0.02 2.31 16 53 H 0.15 2.50 8.01 -2.91 -0.02 2.47 16 Total: -1.00 -67.28 412.62 4.15 -63.12 By element: Atomic # 1 Polarization: 36.47 SS G_CDS: 0.44 Total: 36.91 kcal Atomic # 6 Polarization: -7.58 SS G_CDS: 7.66 Total: 0.08 kcal Atomic # 7 Polarization: -119.63 SS G_CDS: -5.81 Total: -125.44 kcal Atomic # 8 Polarization: -21.13 SS G_CDS: -0.05 Total: -21.18 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 1.90 Total: 46.50 kcal Total: -67.28 4.15 -63.12 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996188237.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.057 kcal (2) G-P(sol) polarization free energy of solvation -67.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds