Wall clock time and date at job start Wed Apr 1 2020 03:34:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.46814 * 2 1 4 4 C 1.53004 * 109.47066 * 119.99442 * 2 1 3 5 5 H 1.09001 * 109.47143 * 295.62329 * 4 2 1 6 6 C 1.50692 * 109.47342 * 175.61810 * 4 2 1 7 7 O 1.21284 * 119.99952 * 332.63146 * 6 4 2 8 8 N 1.34768 * 120.00264 * 152.62968 * 6 4 2 9 9 C 1.47028 * 125.64813 * 354.51274 * 8 6 4 10 10 C 1.54325 * 107.27123 * 181.02120 * 9 8 6 11 11 H 1.08998 * 110.72080 * 140.73369 * 10 9 8 12 12 N 1.46495 * 110.71927 * 263.82796 * 10 9 8 13 13 C 1.36943 * 120.00088 * 273.54284 * 12 10 9 14 14 H 1.07997 * 119.99515 * 0.02562 * 13 12 10 15 15 C 1.38808 * 119.99888 * 180.02562 * 13 12 10 16 16 N 1.31628 * 120.00039 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99986 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.46760 * 359.97438 * 17 15 13 19 19 H 1.48494 * 109.47016 * 120.00125 * 17 15 13 20 20 H 1.48501 * 109.47038 * 240.00318 * 17 15 13 21 21 C 1.55160 * 102.94185 * 22.19471 * 10 9 8 22 22 C 1.52993 * 111.00534 * 82.57109 * 21 10 9 23 23 C 1.53003 * 111.00159 * 206.38577 * 21 10 9 24 24 C 1.47427 * 125.65407 * 174.20310 * 8 6 4 25 25 C 1.50707 * 109.46935 * 55.61595 * 4 2 1 26 26 C 1.38670 * 120.42079 * 240.00225 * 25 4 2 27 27 C 1.38621 * 118.42111 * 179.75463 * 26 25 4 28 28 C 1.38229 * 119.16466 * 0.24667 * 27 26 25 29 29 N 1.31861 * 120.75737 * 0.02562 * 28 27 26 30 30 C 1.31880 * 121.72597 * 359.97438 * 29 28 27 31 31 H 1.09001 * 109.47717 * 300.00185 * 1 2 3 32 32 H 1.09004 * 109.47158 * 60.00615 * 1 2 3 33 33 H 1.09006 * 109.47205 * 180.02562 * 1 2 3 34 34 H 1.08991 * 109.47315 * 239.99508 * 2 1 3 35 35 H 1.08999 * 109.47279 * 65.20739 * 3 2 1 36 36 H 1.08998 * 109.46736 * 185.21057 * 3 2 1 37 37 H 1.09001 * 109.46642 * 305.20672 * 3 2 1 38 38 H 1.09000 * 109.88253 * 300.43943 * 9 8 6 39 39 H 1.08997 * 109.88412 * 61.45179 * 9 8 6 40 40 H 0.96999 * 120.00092 * 93.55350 * 12 10 9 41 41 H 0.96998 * 119.99494 * 180.02562 * 16 15 13 42 42 H 1.09001 * 109.47377 * 60.00485 * 22 21 10 43 43 H 1.08999 * 109.47079 * 179.97438 * 22 21 10 44 44 H 1.09000 * 109.47353 * 299.99587 * 22 21 10 45 45 H 1.09000 * 109.47338 * 59.99526 * 23 21 10 46 46 H 1.09000 * 109.47089 * 180.02562 * 23 21 10 47 47 H 1.09006 * 109.47326 * 299.99903 * 23 21 10 48 48 H 1.09005 * 110.36603 * 274.75535 * 24 8 6 49 49 H 1.09001 * 110.36075 * 37.06674 * 24 8 6 50 50 H 1.08004 * 120.78963 * 0.02562 * 26 25 4 51 51 H 1.08009 * 120.42104 * 180.22721 * 27 26 25 52 52 H 1.07991 * 119.62218 * 180.02562 * 28 27 26 53 53 H 1.08003 * 119.61258 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7211 1.2493 5 1 1.7421 -0.1639 2.1375 6 6 3.5430 -0.8159 1.1963 7 8 4.1122 -0.8315 0.1255 8 7 4.2547 -0.8832 2.3388 9 6 3.7074 -0.7599 3.6978 10 6 4.8915 -0.8747 4.6808 11 1 4.7740 -0.1763 5.5094 12 7 5.0224 -2.2469 5.1766 13 6 4.3027 -2.6518 6.2691 14 1 3.6383 -1.9596 6.7648 15 6 4.4272 -3.9519 6.7392 16 7 5.2373 -4.7954 6.1352 17 14 3.4449 -4.5045 8.2289 18 1 2.6151 -3.3756 8.7211 19 1 2.5641 -5.6379 7.8484 20 1 4.3751 -4.9390 9.3018 21 6 6.1111 -0.4897 3.8022 22 6 6.2616 1.0299 3.7085 23 6 7.3939 -1.1333 4.3324 24 6 5.7100 -1.0990 2.4332 25 6 1.4509 -2.1072 1.3049 26 6 0.6646 -2.4933 2.3799 27 6 0.1395 -3.7762 2.3861 28 6 0.4194 -4.6237 1.3305 29 7 1.1758 -4.2241 0.3272 30 6 1.6920 -3.0111 0.2880 31 1 -0.3634 0.5138 0.8899 32 1 -0.3634 0.5138 -0.8901 33 1 -0.3634 -1.0277 0.0005 34 1 1.8933 -0.5139 -0.8899 35 1 1.7548 1.9288 0.9329 36 1 3.1259 1.4440 -0.0933 37 1 1.6024 1.9825 -0.8397 38 1 3.2207 0.2083 3.8151 39 1 2.9904 -1.5598 3.8827 40 1 5.6190 -2.8687 4.7313 41 1 5.3239 -5.7040 6.4636 42 1 6.4059 1.4430 4.7069 43 1 7.1240 1.2720 3.0875 44 1 5.3625 1.4575 3.2648 45 1 7.2862 -2.2179 4.3249 46 1 8.2330 -0.8467 3.6985 47 1 7.5765 -0.7934 5.3519 48 1 5.9379 -2.1646 2.4081 49 1 6.2235 -0.5813 1.6230 50 1 0.4625 -1.8093 3.1910 51 1 -0.4802 -4.1096 3.2055 52 1 0.0138 -5.6246 1.3276 53 1 2.3073 -2.7198 -0.5504 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996459577.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:34:59 Heat of formation + Delta-G solvation = -16.472006 kcal Electronic energy + Delta-G solvation = -32591.419437 eV Core-core repulsion = 28655.002950 eV Total energy + Delta-G solvation = -3936.416487 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -41.99063 -40.87490 -39.50432 -36.99052 -35.70915 -34.63055 -33.50025 -32.58821 -32.47005 -29.44732 -29.23080 -28.01345 -27.92555 -26.90500 -25.64547 -24.66452 -23.58982 -23.06448 -21.48065 -20.32265 -19.76499 -19.08085 -18.18331 -18.14705 -17.31594 -16.98721 -16.76512 -16.44107 -16.13235 -15.77410 -15.49755 -15.34217 -15.03863 -14.79337 -14.48902 -14.41844 -14.26353 -14.03393 -13.79365 -13.61096 -13.54356 -13.29991 -13.18676 -13.05582 -13.01512 -12.85321 -12.83621 -12.76666 -12.66310 -12.13246 -12.11108 -12.01926 -11.90066 -11.80015 -11.60142 -11.45119 -11.28303 -11.06782 -10.92949 -10.65536 -10.45923 -9.90890 -9.59872 -8.98839 -7.90258 -5.18412 0.07156 0.30201 1.49328 1.50758 1.56964 1.59593 2.02825 2.58550 2.79285 3.34132 3.40772 3.42739 3.64649 3.66259 3.77842 3.81519 3.89473 3.94497 4.01946 4.04514 4.08766 4.19042 4.32147 4.38236 4.46480 4.47289 4.60127 4.61597 4.67422 4.69241 4.78673 4.78965 4.81556 4.88745 4.90347 4.98958 5.00104 5.02589 5.09170 5.10488 5.14258 5.20180 5.23124 5.28008 5.34408 5.39264 5.41033 5.45360 5.55142 5.60959 5.71930 6.30317 6.57624 6.96064 7.12028 7.38188 8.12446 8.35290 9.33358 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.008772 B = 0.004822 C = 0.003547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3191.228608 B = 5805.000776 C = 7891.184114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.073 4.073 3 C -0.143 4.143 4 C -0.045 4.045 5 H 0.117 0.883 6 C 0.533 3.467 7 O -0.577 6.577 8 N -0.603 5.603 9 C 0.081 3.919 10 C 0.170 3.830 11 H 0.081 0.919 12 N -0.723 5.723 13 C -0.228 4.228 14 H 0.084 0.916 15 C -0.072 4.072 16 N -0.970 5.970 17 Si 0.963 3.037 18 H -0.259 1.259 19 H -0.300 1.300 20 H -0.301 1.301 21 C -0.076 4.076 22 C -0.121 4.121 23 C -0.120 4.120 24 C 0.120 3.880 25 C -0.121 4.121 26 C -0.067 4.067 27 C -0.166 4.166 28 C 0.081 3.919 29 N -0.511 5.511 30 C 0.091 3.909 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.042 0.958 34 H 0.062 0.938 35 H 0.069 0.931 36 H 0.038 0.962 37 H 0.072 0.928 38 H 0.090 0.910 39 H 0.056 0.944 40 H 0.373 0.627 41 H 0.247 0.753 42 H 0.071 0.929 43 H 0.066 0.934 44 H 0.058 0.942 45 H 0.034 0.966 46 H 0.068 0.932 47 H 0.058 0.942 48 H 0.036 0.964 49 H 0.075 0.925 50 H 0.158 0.842 51 H 0.162 0.838 52 H 0.176 0.824 53 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.307 13.750 -7.478 18.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.092 4.092 3 C -0.200 4.200 4 C -0.066 4.066 5 H 0.135 0.865 6 C 0.322 3.678 7 O -0.457 6.457 8 N -0.334 5.334 9 C -0.044 4.044 10 C 0.060 3.940 11 H 0.099 0.901 12 N -0.363 5.363 13 C -0.360 4.360 14 H 0.102 0.898 15 C -0.264 4.264 16 N -0.621 5.621 17 Si 0.794 3.206 18 H -0.183 1.183 19 H -0.228 1.228 20 H -0.229 1.229 21 C -0.077 4.077 22 C -0.178 4.178 23 C -0.178 4.178 24 C -0.003 4.003 25 C -0.123 4.123 26 C -0.092 4.092 27 C -0.185 4.185 28 C -0.075 4.075 29 N -0.220 5.220 30 C -0.065 4.065 31 H 0.090 0.910 32 H 0.088 0.912 33 H 0.062 0.938 34 H 0.081 0.919 35 H 0.088 0.912 36 H 0.057 0.943 37 H 0.091 0.909 38 H 0.108 0.892 39 H 0.074 0.926 40 H 0.206 0.794 41 H 0.055 0.945 42 H 0.090 0.910 43 H 0.085 0.915 44 H 0.077 0.923 45 H 0.053 0.947 46 H 0.087 0.913 47 H 0.077 0.923 48 H 0.055 0.945 49 H 0.093 0.907 50 H 0.176 0.824 51 H 0.180 0.820 52 H 0.193 0.807 53 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -9.006 13.177 -8.618 18.139 hybrid contribution -0.005 -1.012 1.230 1.593 sum -9.011 12.165 -7.388 16.845 Atomic orbital electron populations 1.21785 0.92966 1.01544 1.03165 1.20964 0.96813 0.96379 0.95038 1.21817 1.00440 0.94691 1.03087 1.20332 0.89501 0.93759 1.03049 0.86518 1.20505 0.89823 0.75236 0.82208 1.90638 1.72879 1.52608 1.29585 1.48476 1.08635 1.69880 1.06452 1.23093 0.98997 1.01263 0.81082 1.21482 0.91744 0.87046 0.93768 0.90125 1.42634 1.51553 1.08652 1.33423 1.19646 1.17338 0.94978 1.04028 0.89780 1.25439 1.01567 0.97067 1.02298 1.69835 1.42813 1.05428 1.44063 0.85216 0.77898 0.78062 0.79472 1.18324 1.22813 1.22900 1.21989 0.95528 0.97309 0.92885 1.21621 1.02200 0.91236 1.02792 1.21507 0.95685 0.99594 1.00995 1.22242 0.81034 0.98762 0.98228 1.20374 0.99718 0.95967 0.96256 1.21832 0.93780 0.96980 0.96640 1.22476 1.01376 0.94356 1.00321 1.23242 0.93828 1.00950 0.89482 1.67662 1.09747 1.17006 1.27588 1.22578 0.96823 0.89077 0.98066 0.91032 0.91180 0.93843 0.91912 0.91245 0.94256 0.90916 0.89228 0.92599 0.79382 0.94457 0.91003 0.91489 0.92319 0.94653 0.91321 0.92262 0.94533 0.90681 0.82427 0.81997 0.80683 0.84246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.36 8.88 71.98 0.64 -1.72 16 2 C -0.07 -1.58 1.97 -10.79 -0.02 -1.60 16 3 C -0.14 -2.74 8.89 71.98 0.64 -2.10 16 4 C -0.04 -1.11 1.58 -12.29 -0.02 -1.12 16 5 H 0.12 2.39 6.96 -2.39 -0.02 2.37 16 6 C 0.53 16.93 5.82 87.66 0.51 17.44 16 7 O -0.58 -21.63 15.53 -3.04 -0.05 -21.68 16 8 N -0.60 -19.15 3.31 -811.36 -2.69 -21.83 16 9 C 0.08 2.44 5.51 86.73 0.48 2.92 16 10 C 0.17 5.72 2.86 46.18 0.13 5.86 16 11 H 0.08 2.58 8.03 -2.39 -0.02 2.56 16 12 N -0.72 -32.65 4.61 -317.34 -1.46 -34.11 16 13 C -0.23 -11.39 9.98 84.03 0.84 -10.55 16 14 H 0.08 3.92 7.83 -2.91 -0.02 3.90 16 15 C -0.07 -3.86 5.50 84.86 0.47 -3.39 16 16 N -0.97 -57.54 13.06 21.65 0.28 -57.26 16 17 Si 0.96 43.67 29.55 68.60 2.03 45.70 16 18 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 19 H -0.30 -13.91 7.11 99.48 0.71 -13.20 16 20 H -0.30 -14.01 7.11 99.48 0.71 -13.30 16 21 C -0.08 -2.20 0.83 -50.72 -0.04 -2.24 16 22 C -0.12 -2.67 8.59 71.98 0.62 -2.05 16 23 C -0.12 -3.71 8.22 71.98 0.59 -3.11 16 24 C 0.12 3.97 5.85 86.93 0.51 4.47 16 25 C -0.12 -3.30 3.31 -19.77 -0.07 -3.37 16 26 C -0.07 -1.64 9.81 22.46 0.22 -1.42 16 27 C -0.17 -4.01 10.11 22.36 0.23 -3.79 16 28 C 0.08 2.21 11.18 84.69 0.95 3.16 16 29 N -0.51 -16.65 10.36 -195.85 -2.03 -18.68 16 30 C 0.09 2.91 10.04 84.67 0.85 3.76 16 31 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.07 1.03 8.14 -2.38 -0.02 1.01 16 33 H 0.04 0.86 7.09 -2.38 -0.02 0.84 16 34 H 0.06 1.64 7.15 -2.39 -0.02 1.63 16 35 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 36 H 0.04 0.93 7.05 -2.39 -0.02 0.92 16 37 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 38 H 0.09 2.08 7.93 -2.39 -0.02 2.06 16 39 H 0.06 1.94 8.05 -2.39 -0.02 1.92 16 40 H 0.37 18.99 6.10 -92.71 -0.57 18.42 16 41 H 0.25 14.42 8.31 -92.71 -0.77 13.65 16 42 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 43 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 44 H 0.06 1.25 7.91 -2.39 -0.02 1.23 16 45 H 0.03 1.33 6.38 -2.39 -0.02 1.31 16 46 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 47 H 0.06 1.83 8.14 -2.38 -0.02 1.81 16 48 H 0.04 1.42 7.99 -2.38 -0.02 1.41 16 49 H 0.07 2.39 7.90 -2.39 -0.02 2.37 16 50 H 0.16 3.05 8.00 -2.91 -0.02 3.03 16 51 H 0.16 2.97 8.06 -2.91 -0.02 2.95 16 52 H 0.18 3.72 8.06 -2.92 -0.02 3.69 16 53 H 0.14 4.67 7.57 -2.91 -0.02 4.65 16 Total: -1.00 -67.74 418.16 3.92 -63.82 By element: Atomic # 1 Polarization: 42.59 SS G_CDS: 0.32 Total: 42.91 kcal Atomic # 6 Polarization: -6.39 SS G_CDS: 7.52 Total: 1.13 kcal Atomic # 7 Polarization: -125.99 SS G_CDS: -5.90 Total: -131.89 kcal Atomic # 8 Polarization: -21.63 SS G_CDS: -0.05 Total: -21.68 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.70 kcal Total: -67.74 3.92 -63.82 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996459577.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.350 kcal (2) G-P(sol) polarization free energy of solvation -67.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds