Wall clock time and date at job start Wed Apr 1 2020 03:35:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52993 * 109.47207 * 2 1 4 4 C 1.53011 * 109.46527 * 119.99848 * 2 1 3 5 5 H 1.09000 * 109.46821 * 298.23583 * 4 2 1 6 6 C 1.50703 * 109.46818 * 178.23907 * 4 2 1 7 7 O 1.21278 * 120.00051 * 323.61314 * 6 4 2 8 8 N 1.34771 * 119.99723 * 143.88729 * 6 4 2 9 9 C 1.47024 * 125.64913 * 4.75013 * 8 6 4 10 10 C 1.54326 * 107.27113 * 181.02219 * 9 8 6 11 11 H 1.09003 * 110.71628 * 263.64986 * 10 9 8 12 12 N 1.46500 * 110.72396 * 140.55278 * 10 9 8 13 13 C 1.36944 * 119.99851 * 86.45007 * 12 10 9 14 14 H 1.07996 * 119.99630 * 0.02562 * 13 12 10 15 15 C 1.38807 * 119.99725 * 180.02562 * 13 12 10 16 16 N 1.31614 * 120.00549 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 119.99827 * 180.02562 * 15 13 12 18 18 H 1.48504 * 109.47314 * 59.99591 * 17 15 13 19 19 H 1.48497 * 109.47116 * 179.97438 * 17 15 13 20 20 H 1.48504 * 109.47028 * 299.99971 * 17 15 13 21 21 C 1.55158 * 102.94285 * 22.19018 * 10 9 8 22 22 C 1.52999 * 111.00426 * 82.57477 * 21 10 9 23 23 C 1.53008 * 111.00112 * 206.38929 * 21 10 9 24 24 C 1.47427 * 125.64909 * 184.43629 * 8 6 4 25 25 C 1.50696 * 109.47199 * 58.24197 * 4 2 1 26 26 C 1.38685 * 120.41618 * 239.72317 * 25 4 2 27 27 C 1.38623 * 118.41901 * 179.78246 * 26 25 4 28 28 C 1.38230 * 119.16143 * 0.50894 * 27 26 25 29 29 N 1.31850 * 120.76286 * 359.72767 * 28 27 26 30 30 C 1.31887 * 121.72712 * 0.02562 * 29 28 27 31 31 H 1.08994 * 109.47558 * 300.00597 * 1 2 3 32 32 H 1.09003 * 109.46827 * 60.00446 * 1 2 3 33 33 H 1.08997 * 109.47318 * 179.97438 * 1 2 3 34 34 H 1.08994 * 109.47558 * 239.99403 * 2 1 3 35 35 H 1.09007 * 109.46917 * 176.49124 * 3 2 1 36 36 H 1.08996 * 109.47172 * 296.48763 * 3 2 1 37 37 H 1.09001 * 109.47533 * 56.49491 * 3 2 1 38 38 H 1.09000 * 109.88174 * 300.43625 * 9 8 6 39 39 H 1.08992 * 109.88426 * 61.59928 * 9 8 6 40 40 H 0.96998 * 120.00194 * 266.45918 * 12 10 9 41 41 H 0.96994 * 120.00694 * 180.02562 * 16 15 13 42 42 H 1.09001 * 109.46802 * 59.99922 * 22 21 10 43 43 H 1.08999 * 109.46698 * 180.02562 * 22 21 10 44 44 H 1.08994 * 109.47114 * 300.00138 * 22 21 10 45 45 H 1.08997 * 109.46976 * 60.00218 * 23 21 10 46 46 H 1.09005 * 109.46670 * 179.97438 * 23 21 10 47 47 H 1.08992 * 109.47087 * 299.99664 * 23 21 10 48 48 H 1.09002 * 110.36558 * 274.75120 * 24 8 6 49 49 H 1.09002 * 110.36462 * 37.06830 * 24 8 6 50 50 H 1.08001 * 120.78475 * 0.02562 * 26 25 4 51 51 H 1.07999 * 120.41855 * 180.25653 * 27 26 25 52 52 H 1.07996 * 119.61543 * 179.70246 * 28 27 26 53 53 H 1.08002 * 119.61734 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 1.2494 5 1 1.7025 -0.1894 2.1390 6 6 3.5463 -0.7593 1.2278 7 8 4.1343 -0.9019 0.1768 8 7 4.2398 -0.6403 2.3772 9 6 3.6580 -0.5676 3.7255 10 6 4.8267 -0.4109 4.7211 11 1 5.1104 -1.3773 5.1378 12 7 4.4759 0.5290 5.7886 13 6 3.8156 0.0842 6.9029 14 1 3.5539 -0.9595 6.9947 15 6 3.4828 0.9749 7.9141 16 7 3.8013 2.2470 7.8019 17 14 2.5827 0.3681 9.4343 18 1 3.4057 -0.6610 10.1191 19 1 2.3466 1.5071 10.3574 20 1 1.2808 -0.2244 9.0353 21 6 5.9633 0.1641 3.8350 22 6 5.8210 1.6790 3.6753 23 6 7.3374 -0.1980 4.4024 24 6 5.7079 -0.5680 2.4914 25 6 1.5022 -2.1289 1.2714 26 6 0.7129 -2.5626 2.3260 27 6 0.2366 -3.8642 2.3018 28 6 0.5706 -4.6841 1.2402 29 7 1.3278 -4.2391 0.2567 30 6 1.7944 -3.0056 0.2442 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 -0.3634 -1.0276 -0.0005 34 1 1.8934 -0.5139 -0.8899 35 1 3.1283 1.4430 0.0629 36 1 1.7290 1.9378 -0.9198 37 1 1.6263 1.9741 0.8569 38 1 2.9929 0.2931 3.7963 39 1 3.1072 -1.4829 3.9414 40 1 4.7112 1.4664 5.7062 41 1 3.5690 2.8694 8.5087 42 1 5.8678 2.1537 4.6554 43 1 6.6300 2.0559 3.0495 44 1 4.8635 1.9066 3.2068 45 1 7.4398 -1.2824 4.4420 46 1 8.1157 0.2170 3.7619 47 1 7.4355 0.2132 5.4070 48 1 6.1363 -1.5701 2.5152 49 1 6.1251 0.0042 1.6628 50 1 0.4718 -1.9007 3.1446 51 1 -0.3842 -4.2343 3.1043 52 1 0.2076 -5.7009 1.2162 53 1 2.4115 -2.6767 -0.5790 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996459580.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:35:03 Heat of formation + Delta-G solvation = -14.837843 kcal Electronic energy + Delta-G solvation = -32229.739771 eV Core-core repulsion = 28293.394147 eV Total energy + Delta-G solvation = -3936.345624 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -42.00802 -40.88593 -39.51119 -37.03823 -35.84890 -34.60993 -33.52743 -32.65521 -32.47173 -29.38569 -29.01729 -28.28818 -27.99856 -26.90928 -25.79342 -24.63815 -23.58561 -22.98242 -21.53027 -20.29485 -19.74805 -19.12008 -18.25812 -18.13206 -17.27539 -17.03699 -16.76618 -16.55461 -16.14645 -15.71970 -15.54191 -15.32273 -15.02585 -14.87896 -14.44992 -14.40353 -14.21566 -14.03297 -13.96944 -13.73057 -13.56822 -13.35407 -13.33443 -13.08310 -12.98188 -12.89343 -12.80494 -12.78790 -12.53955 -12.17108 -12.13581 -12.09190 -11.91179 -11.86113 -11.65899 -11.50570 -11.32750 -11.08535 -10.89680 -10.66004 -10.44004 -9.91372 -9.64262 -9.01615 -7.90994 -5.19837 0.07627 0.28983 1.51990 1.53056 1.54152 1.58987 1.95772 2.59198 2.79846 3.31322 3.39972 3.42131 3.63307 3.66480 3.73912 3.80097 3.83632 3.92900 4.03385 4.04207 4.16027 4.16688 4.28162 4.33593 4.40458 4.43740 4.47031 4.60077 4.63544 4.65675 4.75179 4.78228 4.81907 4.84281 4.85653 4.92207 4.95102 5.01551 5.06711 5.12910 5.15368 5.16014 5.21272 5.24857 5.27664 5.32357 5.40307 5.42936 5.50606 5.57554 5.72766 6.30084 6.49882 6.97515 7.08391 7.39080 8.11113 8.36265 9.31688 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.009428 B = 0.003847 C = 0.003328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2969.314870 B = 7276.590775 C = 8412.173684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.072 4.072 3 C -0.146 4.146 4 C -0.051 4.051 5 H 0.102 0.898 6 C 0.537 3.463 7 O -0.571 6.571 8 N -0.609 5.609 9 C 0.090 3.910 10 C 0.174 3.826 11 H 0.063 0.937 12 N -0.720 5.720 13 C -0.240 4.240 14 H 0.077 0.923 15 C -0.065 4.065 16 N -0.966 5.966 17 Si 0.964 3.036 18 H -0.281 1.281 19 H -0.301 1.301 20 H -0.277 1.277 21 C -0.077 4.077 22 C -0.124 4.124 23 C -0.125 4.125 24 C 0.120 3.880 25 C -0.124 4.124 26 C -0.072 4.072 27 C -0.162 4.162 28 C 0.087 3.913 29 N -0.508 5.508 30 C 0.098 3.902 31 H 0.062 0.938 32 H 0.071 0.929 33 H 0.050 0.950 34 H 0.072 0.928 35 H 0.036 0.964 36 H 0.073 0.927 37 H 0.059 0.941 38 H 0.061 0.939 39 H 0.062 0.938 40 H 0.381 0.619 41 H 0.250 0.750 42 H 0.049 0.951 43 H 0.070 0.930 44 H 0.042 0.958 45 H 0.064 0.936 46 H 0.073 0.927 47 H 0.048 0.952 48 H 0.074 0.926 49 H 0.076 0.924 50 H 0.148 0.852 51 H 0.166 0.834 52 H 0.183 0.817 53 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.877 -7.667 -13.217 16.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.091 4.091 3 C -0.203 4.203 4 C -0.073 4.073 5 H 0.120 0.880 6 C 0.327 3.673 7 O -0.451 6.451 8 N -0.341 5.341 9 C -0.036 4.036 10 C 0.063 3.937 11 H 0.081 0.919 12 N -0.361 5.361 13 C -0.372 4.372 14 H 0.095 0.905 15 C -0.257 4.257 16 N -0.616 5.616 17 Si 0.794 3.206 18 H -0.207 1.207 19 H -0.227 1.227 20 H -0.203 1.203 21 C -0.078 4.078 22 C -0.182 4.182 23 C -0.182 4.182 24 C -0.002 4.002 25 C -0.126 4.126 26 C -0.098 4.098 27 C -0.182 4.182 28 C -0.070 4.070 29 N -0.217 5.217 30 C -0.058 4.058 31 H 0.081 0.919 32 H 0.090 0.910 33 H 0.069 0.931 34 H 0.091 0.909 35 H 0.056 0.944 36 H 0.092 0.908 37 H 0.078 0.922 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.217 0.783 41 H 0.059 0.941 42 H 0.068 0.932 43 H 0.089 0.911 44 H 0.061 0.939 45 H 0.083 0.917 46 H 0.091 0.909 47 H 0.067 0.933 48 H 0.092 0.908 49 H 0.094 0.906 50 H 0.166 0.834 51 H 0.184 0.816 52 H 0.200 0.800 53 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -4.479 -8.405 -14.373 17.242 hybrid contribution -0.497 0.917 1.780 2.063 sum -4.976 -7.488 -12.592 15.473 Atomic orbital electron populations 1.21776 0.92962 1.01822 1.02929 1.20976 0.96929 0.95865 0.95294 1.21835 1.00164 0.95430 1.02889 1.20324 0.90283 0.94119 1.02559 0.88009 1.20382 0.89809 0.75175 0.81964 1.90640 1.71868 1.51588 1.30998 1.48537 1.07986 1.71211 1.06336 1.22958 0.98743 1.00823 0.81074 1.21353 0.91298 0.93617 0.87394 0.91915 1.42632 1.68221 1.07873 1.17419 1.19551 1.27865 0.93930 0.95820 0.90487 1.25404 1.03172 0.95675 1.01491 1.69780 1.53787 1.02963 1.35050 0.85363 0.78909 0.76516 0.79853 1.20748 1.22740 1.20274 1.21956 0.96465 0.95784 0.93636 1.21555 1.01335 0.94008 1.01277 1.21615 0.94152 1.01763 1.00716 1.22364 0.80217 1.00349 0.97313 1.20337 1.00162 0.95347 0.96760 1.21835 0.94155 0.96917 0.96916 1.22475 1.01187 0.93915 1.00596 1.23330 0.93148 1.01282 0.89195 1.67723 1.10655 1.15553 1.27766 1.22600 0.96687 0.88981 0.97563 0.91876 0.91040 0.93108 0.90944 0.94448 0.90761 0.92169 0.92026 0.91954 0.78267 0.94102 0.93185 0.91084 0.93862 0.91716 0.90855 0.93297 0.90831 0.90608 0.83394 0.81614 0.80050 0.83861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.53 8.92 71.98 0.64 -1.89 16 2 C -0.07 -1.62 2.03 -10.79 -0.02 -1.64 16 3 C -0.15 -3.29 9.02 71.98 0.65 -2.64 16 4 C -0.05 -1.28 1.63 -12.28 -0.02 -1.30 16 5 H 0.10 2.51 6.66 -2.39 -0.02 2.49 16 6 C 0.54 16.32 5.40 87.66 0.47 16.79 16 7 O -0.57 -20.02 15.66 -3.02 -0.05 -20.06 16 8 N -0.61 -18.32 3.31 -811.35 -2.69 -21.00 16 9 C 0.09 2.87 5.61 86.73 0.49 3.36 16 10 C 0.17 6.12 2.84 46.18 0.13 6.25 16 11 H 0.06 2.25 8.02 -2.39 -0.02 2.23 16 12 N -0.72 -32.17 5.08 -317.32 -1.61 -33.78 16 13 C -0.24 -12.00 9.98 84.03 0.84 -11.16 16 14 H 0.08 3.68 7.83 -2.91 -0.02 3.66 16 15 C -0.06 -3.42 5.50 84.86 0.47 -2.96 16 16 N -0.97 -55.23 13.06 21.65 0.28 -54.95 16 17 Si 0.96 43.07 29.55 68.60 2.03 45.10 16 18 H -0.28 -12.23 7.11 99.48 0.71 -11.53 16 19 H -0.30 -13.84 7.11 99.48 0.71 -13.13 16 20 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 21 C -0.08 -2.28 0.87 -50.71 -0.04 -2.32 16 22 C -0.12 -3.84 7.94 71.98 0.57 -3.26 16 23 C -0.12 -3.29 8.68 71.98 0.62 -2.66 16 24 C 0.12 3.40 5.83 86.93 0.51 3.90 16 25 C -0.12 -2.99 3.43 -19.77 -0.07 -3.06 16 26 C -0.07 -1.51 9.81 22.47 0.22 -1.29 16 27 C -0.16 -2.87 10.11 22.36 0.23 -2.64 16 28 C 0.09 1.72 11.18 84.69 0.95 2.66 16 29 N -0.51 -13.21 10.36 -195.85 -2.03 -15.23 16 30 C 0.10 2.62 10.00 84.67 0.85 3.47 16 31 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.05 0.97 7.16 -2.39 -0.02 0.96 16 34 H 0.07 1.80 7.13 -2.39 -0.02 1.79 16 35 H 0.04 1.00 6.92 -2.38 -0.02 0.98 16 36 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 38 H 0.06 2.14 7.52 -2.39 -0.02 2.12 16 39 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 40 H 0.38 18.41 5.26 -92.71 -0.49 17.93 16 41 H 0.25 14.09 8.31 -92.71 -0.77 13.32 16 42 H 0.05 1.79 6.34 -2.39 -0.02 1.78 16 43 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 44 H 0.04 1.40 7.91 -2.39 -0.02 1.38 16 45 H 0.06 1.55 8.07 -2.39 -0.02 1.53 16 46 H 0.07 1.61 8.14 -2.38 -0.02 1.59 16 47 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 48 H 0.07 1.97 7.99 -2.39 -0.02 1.95 16 49 H 0.08 2.13 8.00 -2.39 -0.02 2.12 16 50 H 0.15 2.73 8.00 -2.91 -0.02 2.71 16 51 H 0.17 1.89 8.06 -2.91 -0.02 1.87 16 52 H 0.18 2.38 8.06 -2.91 -0.02 2.35 16 53 H 0.14 4.11 7.09 -2.91 -0.02 4.09 16 Total: -1.00 -62.99 416.61 3.81 -59.18 By element: Atomic # 1 Polarization: 40.73 SS G_CDS: 0.40 Total: 41.13 kcal Atomic # 6 Polarization: -7.86 SS G_CDS: 7.48 Total: -0.38 kcal Atomic # 7 Polarization: -118.92 SS G_CDS: -6.04 Total: -124.96 kcal Atomic # 8 Polarization: -20.02 SS G_CDS: -0.05 Total: -20.06 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.10 kcal Total: -62.99 3.81 -59.18 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996459580.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.337 kcal (2) G-P(sol) polarization free energy of solvation -62.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds