Wall clock time and date at job start Wed Apr 1 2020 03:35:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47370 * 2 1 4 4 C 1.53003 * 109.47008 * 119.99595 * 2 1 3 5 5 H 1.08995 * 109.47151 * 303.07971 * 4 2 1 6 6 C 1.50702 * 109.46917 * 63.08054 * 4 2 1 7 7 O 1.21277 * 119.99998 * 34.50090 * 6 4 2 8 8 N 1.34777 * 119.99551 * 214.50017 * 6 4 2 9 9 C 1.47021 * 125.65175 * 354.75633 * 8 6 4 10 10 C 1.54325 * 107.27326 * 180.79311 * 9 8 6 11 11 H 1.08997 * 110.72560 * 263.83261 * 10 9 8 12 12 N 1.46500 * 110.71823 * 140.55718 * 10 9 8 13 13 C 1.36930 * 119.99989 * 86.46005 * 12 10 9 14 14 H 1.08008 * 120.00044 * 359.97438 * 13 12 10 15 15 C 1.38807 * 120.00324 * 179.97438 * 13 12 10 16 16 N 1.31620 * 119.99920 * 359.97438 * 15 13 12 17 17 Si 1.86808 * 120.00300 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.46744 * 60.00192 * 17 15 13 19 19 H 1.48500 * 109.46929 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.46793 * 300.00037 * 17 15 13 21 21 C 1.55161 * 102.94145 * 22.19692 * 10 9 8 22 22 C 1.53004 * 111.00451 * 82.56661 * 21 10 9 23 23 C 1.53001 * 111.00313 * 206.38587 * 21 10 9 24 24 C 1.47425 * 125.64613 * 174.45145 * 8 6 4 25 25 C 1.50701 * 109.47081 * 183.07911 * 4 2 1 26 26 C 1.38665 * 120.41903 * 120.00288 * 25 4 2 27 27 C 1.38630 * 118.42473 * 180.02562 * 26 25 4 28 28 C 1.38228 * 119.15859 * 0.02562 * 27 26 25 29 29 N 1.31859 * 120.76072 * 359.97438 * 28 27 26 30 30 C 1.31880 * 121.72863 * 359.71305 * 29 28 27 31 31 H 1.09003 * 109.47049 * 54.78434 * 1 2 3 32 32 H 1.08996 * 109.47266 * 174.78081 * 1 2 3 33 33 H 1.09000 * 109.46850 * 294.78341 * 1 2 3 34 34 H 1.09002 * 109.47493 * 239.99460 * 2 1 3 35 35 H 1.08999 * 109.47306 * 180.02562 * 3 2 1 36 36 H 1.08997 * 109.46529 * 299.99778 * 3 2 1 37 37 H 1.09002 * 109.47253 * 59.99314 * 3 2 1 38 38 H 1.08993 * 109.88536 * 300.21379 * 9 8 6 39 39 H 1.08997 * 109.87984 * 61.38116 * 9 8 6 40 40 H 0.96995 * 120.00174 * 266.45519 * 12 10 9 41 41 H 0.97000 * 120.00208 * 180.02562 * 16 15 13 42 42 H 1.09001 * 109.46301 * 60.00715 * 22 21 10 43 43 H 1.09000 * 109.46609 * 180.02562 * 22 21 10 44 44 H 1.08997 * 109.47481 * 300.00560 * 22 21 10 45 45 H 1.08993 * 109.47316 * 60.00048 * 23 21 10 46 46 H 1.09007 * 109.46443 * 180.02562 * 23 21 10 47 47 H 1.09000 * 109.47106 * 299.99436 * 23 21 10 48 48 H 1.09005 * 110.36755 * 274.97720 * 24 8 6 49 49 H 1.09004 * 110.36837 * 37.29732 * 24 8 6 50 50 H 1.08004 * 120.79233 * 0.02562 * 26 25 4 51 51 H 1.07999 * 120.42268 * 179.97438 * 27 26 25 52 52 H 1.08000 * 119.62004 * 180.02562 * 28 27 26 53 53 H 1.08003 * 119.62142 * 180.31118 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.6323 -0.2402 2.1384 6 6 1.6009 -2.1623 1.2118 7 8 1.5292 -2.7470 0.1517 8 7 1.2880 -2.8014 2.3564 9 6 1.4336 -2.2517 3.7122 10 6 0.9722 -3.3428 4.7011 11 1 -0.0680 -3.1886 4.9879 12 7 1.8383 -3.3715 5.8824 13 6 1.5772 -2.5456 6.9429 14 1 0.7331 -1.8728 6.9084 15 6 2.3975 -2.5731 8.0624 16 7 3.4259 -3.3934 8.1047 17 14 2.0418 -1.4459 9.5089 18 1 0.6901 -1.7431 10.0473 19 1 3.0565 -1.6675 10.5703 20 1 2.0957 -0.0317 9.0593 21 6 1.1263 -4.6476 3.8757 22 6 2.5715 -5.1491 3.9072 23 6 0.1630 -5.7276 4.3722 24 6 0.7370 -4.1652 2.4560 25 6 3.5450 -0.6554 1.2881 26 6 4.1941 -0.0467 2.3516 27 6 5.5798 -0.0091 2.3448 28 6 6.2637 -0.5752 1.2853 29 7 5.6132 -1.1460 0.2905 30 6 4.2959 -1.2054 0.2667 31 1 -0.3633 0.5926 -0.8396 32 1 -0.3633 -1.0234 -0.0935 33 1 -0.3633 0.4308 0.9330 34 1 1.8934 -0.5139 -0.8899 35 1 3.1301 1.4425 -0.0005 36 1 1.6767 1.9562 -0.8900 37 1 1.6767 1.9564 0.8899 38 1 2.4771 -1.9988 3.8996 39 1 0.8097 -1.3646 3.8215 40 1 2.5966 -3.9755 5.9132 41 1 3.9989 -3.4129 8.8871 42 1 2.8634 -5.3511 4.9378 43 1 2.6513 -6.0642 3.3206 44 1 3.2292 -4.3890 3.4856 45 1 -0.8627 -5.3720 4.2754 46 1 0.2924 -6.6314 3.7766 47 1 0.3737 -5.9492 5.4184 48 1 -0.3474 -4.1452 2.3462 49 1 1.1838 -4.8110 1.7001 50 1 3.6333 0.3879 3.1659 51 1 6.1182 0.4573 3.1565 52 1 7.3434 -0.5505 1.2726 53 1 3.7981 -1.6856 -0.5628 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996459587.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:35:14 Heat of formation + Delta-G solvation = -14.909876 kcal Electronic energy + Delta-G solvation = -32380.667926 eV Core-core repulsion = 28444.319179 eV Total energy + Delta-G solvation = -3936.348748 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -42.00445 -40.88477 -39.51361 -37.02721 -35.84223 -34.61488 -33.52889 -32.64960 -32.47757 -29.37666 -29.00970 -28.32027 -27.96128 -26.90443 -25.78673 -24.65665 -23.59952 -22.96978 -21.50124 -20.27698 -19.77333 -19.11430 -18.20908 -18.18643 -17.28692 -17.05331 -16.71567 -16.57179 -16.10710 -15.74162 -15.57629 -15.22736 -15.05686 -14.86285 -14.48514 -14.44345 -14.29140 -14.03304 -13.87709 -13.69956 -13.54608 -13.44848 -13.26323 -13.07002 -12.97912 -12.86539 -12.82172 -12.79337 -12.54780 -12.15893 -12.13294 -12.07357 -11.91746 -11.85472 -11.64434 -11.49057 -11.32037 -11.09328 -10.89098 -10.66193 -10.45943 -9.91621 -9.62170 -9.01237 -7.90314 -5.19303 0.06546 0.28184 1.52235 1.53375 1.54928 1.59297 1.96860 2.59631 2.78719 3.31970 3.40681 3.41555 3.64110 3.66177 3.75563 3.80177 3.82154 3.93025 4.02265 4.04396 4.16680 4.17284 4.29802 4.35520 4.39700 4.43202 4.47214 4.59132 4.65210 4.67136 4.76462 4.78069 4.80731 4.83007 4.86472 4.95964 4.97030 5.00205 5.06087 5.12344 5.14787 5.18747 5.21604 5.23660 5.28515 5.36164 5.40184 5.42608 5.50509 5.58219 5.71172 6.30306 6.51233 6.95627 7.09482 7.39098 8.11651 8.35969 9.32514 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.009262 B = 0.004043 C = 0.003511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3022.431214 B = 6923.448000 C = 7973.908416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.072 4.072 3 C -0.138 4.138 4 C -0.049 4.049 5 H 0.108 0.892 6 C 0.537 3.463 7 O -0.571 6.571 8 N -0.609 5.609 9 C 0.088 3.912 10 C 0.174 3.826 11 H 0.070 0.930 12 N -0.721 5.721 13 C -0.238 4.238 14 H 0.080 0.920 15 C -0.066 4.066 16 N -0.967 5.967 17 Si 0.965 3.035 18 H -0.280 1.280 19 H -0.302 1.302 20 H -0.276 1.276 21 C -0.078 4.078 22 C -0.123 4.123 23 C -0.124 4.124 24 C 0.119 3.881 25 C -0.123 4.123 26 C -0.071 4.071 27 C -0.166 4.166 28 C 0.086 3.914 29 N -0.508 5.508 30 C 0.096 3.904 31 H 0.074 0.926 32 H 0.039 0.961 33 H 0.064 0.936 34 H 0.069 0.931 35 H 0.045 0.955 36 H 0.071 0.929 37 H 0.066 0.934 38 H 0.053 0.947 39 H 0.073 0.927 40 H 0.379 0.621 41 H 0.249 0.751 42 H 0.049 0.951 43 H 0.067 0.933 44 H 0.033 0.967 45 H 0.069 0.931 46 H 0.070 0.930 47 H 0.047 0.953 48 H 0.084 0.916 49 H 0.070 0.930 50 H 0.148 0.852 51 H 0.161 0.839 52 H 0.180 0.820 53 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.577 7.061 -13.909 16.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.091 4.091 3 C -0.195 4.195 4 C -0.071 4.071 5 H 0.126 0.874 6 C 0.326 3.674 7 O -0.451 6.451 8 N -0.341 5.341 9 C -0.038 4.038 10 C 0.063 3.937 11 H 0.088 0.912 12 N -0.362 5.362 13 C -0.370 4.370 14 H 0.098 0.902 15 C -0.259 4.259 16 N -0.618 5.618 17 Si 0.794 3.206 18 H -0.207 1.207 19 H -0.229 1.229 20 H -0.202 1.202 21 C -0.080 4.080 22 C -0.181 4.181 23 C -0.181 4.181 24 C -0.003 4.003 25 C -0.125 4.125 26 C -0.097 4.097 27 C -0.186 4.186 28 C -0.071 4.071 29 N -0.217 5.217 30 C -0.060 4.060 31 H 0.093 0.907 32 H 0.058 0.942 33 H 0.083 0.917 34 H 0.087 0.913 35 H 0.064 0.936 36 H 0.090 0.910 37 H 0.085 0.915 38 H 0.071 0.929 39 H 0.091 0.909 40 H 0.215 0.785 41 H 0.058 0.942 42 H 0.068 0.932 43 H 0.086 0.914 44 H 0.052 0.948 45 H 0.088 0.912 46 H 0.089 0.911 47 H 0.066 0.934 48 H 0.102 0.898 49 H 0.088 0.912 50 H 0.166 0.834 51 H 0.178 0.822 52 H 0.197 0.803 53 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -3.194 6.544 -15.082 16.748 hybrid contribution 0.070 0.466 1.834 1.893 sum -3.124 7.010 -13.248 15.310 Atomic orbital electron populations 1.21830 0.93895 1.01478 1.03000 1.20981 0.96598 0.96460 0.95097 1.21785 1.00488 0.94218 1.03046 1.20350 0.91829 0.92112 1.02807 0.87415 1.20404 0.76090 0.88792 0.82108 1.90639 1.55372 1.68842 1.30282 1.48529 1.62822 1.16561 1.06163 1.22988 1.00979 0.99030 0.80805 1.21387 0.94496 0.91868 0.85914 0.91163 1.42646 1.32743 1.46647 1.14185 1.19576 1.08860 1.14149 0.94393 0.90195 1.25424 0.98069 1.01414 1.00995 1.69799 1.19347 1.42117 1.30497 0.85349 0.76744 0.79070 0.79392 1.20652 1.22899 1.20248 1.21923 0.96356 0.95945 0.93737 1.21541 0.94995 1.00340 1.01199 1.21607 0.98263 0.97386 1.00888 1.22342 0.98868 0.82705 0.96430 1.20363 0.94969 1.00732 0.96436 1.21811 0.95371 0.95716 0.96768 1.22464 0.94755 1.00827 1.00508 1.23277 1.01774 0.92828 0.89192 1.67706 1.09929 1.16510 1.27518 1.22623 0.89596 0.96029 0.97763 0.90688 0.94162 0.91746 0.91285 0.93596 0.91018 0.91517 0.92855 0.90870 0.78508 0.94188 0.93233 0.91377 0.94769 0.91160 0.91073 0.93406 0.89789 0.91173 0.83397 0.82165 0.80267 0.83735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.82 8.88 71.98 0.64 -2.18 16 2 C -0.07 -1.54 2.01 -10.79 -0.02 -1.57 16 3 C -0.14 -2.40 8.90 71.98 0.64 -1.76 16 4 C -0.05 -1.20 1.61 -12.28 -0.02 -1.22 16 5 H 0.11 2.42 6.76 -2.39 -0.02 2.40 16 6 C 0.54 16.13 5.61 87.66 0.49 16.62 16 7 O -0.57 -19.97 15.57 -3.02 -0.05 -20.02 16 8 N -0.61 -18.10 3.31 -811.79 -2.69 -20.79 16 9 C 0.09 2.77 5.60 86.73 0.49 3.25 16 10 C 0.17 6.04 2.85 46.18 0.13 6.17 16 11 H 0.07 2.40 8.02 -2.39 -0.02 2.38 16 12 N -0.72 -32.35 5.08 -317.33 -1.61 -33.96 16 13 C -0.24 -11.86 9.98 84.03 0.84 -11.02 16 14 H 0.08 3.76 7.83 -2.91 -0.02 3.74 16 15 C -0.07 -3.52 5.50 84.86 0.47 -3.05 16 16 N -0.97 -55.72 13.06 21.65 0.28 -55.44 16 17 Si 0.96 43.04 29.55 68.60 2.03 45.07 16 18 H -0.28 -12.13 7.11 99.48 0.71 -11.43 16 19 H -0.30 -13.95 7.11 99.48 0.71 -13.24 16 20 H -0.28 -11.77 7.11 99.48 0.71 -11.07 16 21 C -0.08 -2.34 0.87 -50.79 -0.04 -2.38 16 22 C -0.12 -4.05 7.93 71.98 0.57 -3.48 16 23 C -0.12 -3.23 8.68 71.98 0.62 -2.60 16 24 C 0.12 3.33 5.86 86.86 0.51 3.83 16 25 C -0.12 -3.18 3.37 -19.77 -0.07 -3.24 16 26 C -0.07 -1.70 9.81 22.47 0.22 -1.48 16 27 C -0.17 -3.68 10.11 22.36 0.23 -3.45 16 28 C 0.09 2.03 11.18 84.69 0.95 2.98 16 29 N -0.51 -14.72 10.36 -195.84 -2.03 -16.74 16 30 C 0.10 2.79 10.02 84.67 0.85 3.64 16 31 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.04 0.94 7.21 -2.39 -0.02 0.92 16 33 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.07 1.69 7.14 -2.39 -0.02 1.68 16 35 H 0.04 0.89 7.13 -2.39 -0.02 0.87 16 36 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 38 H 0.05 1.91 8.03 -2.39 -0.02 1.90 16 39 H 0.07 2.08 7.71 -2.39 -0.02 2.06 16 40 H 0.38 18.66 5.26 -92.71 -0.49 18.18 16 41 H 0.25 14.16 8.31 -92.71 -0.77 13.39 16 42 H 0.05 1.86 6.34 -2.39 -0.02 1.85 16 43 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 44 H 0.03 1.22 7.91 -2.39 -0.02 1.20 16 45 H 0.07 1.60 8.07 -2.39 -0.02 1.58 16 46 H 0.07 1.57 8.14 -2.38 -0.02 1.55 16 47 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 48 H 0.08 2.06 7.99 -2.38 -0.02 2.04 16 49 H 0.07 2.04 7.90 -2.38 -0.02 2.02 16 50 H 0.15 3.14 8.00 -2.91 -0.02 3.12 16 51 H 0.16 2.71 8.06 -2.91 -0.02 2.69 16 52 H 0.18 3.11 8.06 -2.91 -0.02 3.09 16 53 H 0.15 4.38 7.18 -2.91 -0.02 4.36 16 Total: -1.00 -63.67 416.93 3.82 -59.85 By element: Atomic # 1 Polarization: 42.56 SS G_CDS: 0.40 Total: 42.96 kcal Atomic # 6 Polarization: -8.42 SS G_CDS: 7.49 Total: -0.94 kcal Atomic # 7 Polarization: -120.88 SS G_CDS: -6.05 Total: -126.93 kcal Atomic # 8 Polarization: -19.97 SS G_CDS: -0.05 Total: -20.02 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.07 kcal Total: -63.67 3.82 -59.85 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996459587.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.940 kcal (2) G-P(sol) polarization free energy of solvation -63.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds