Wall clock time and date at job start Wed Apr 1 2020 04:32:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47226 * 2 1 4 4 N 1.46505 * 109.46906 * 120.00096 * 2 1 3 5 5 C 1.46496 * 119.99990 * 294.70597 * 4 2 1 6 6 C 1.39047 * 119.99985 * 114.70756 * 4 2 1 7 7 C 1.39217 * 119.92833 * 5.27587 * 6 4 2 8 8 C 1.37617 * 120.06783 * 179.97438 * 7 6 4 9 9 C 1.39792 * 119.92925 * 359.97438 * 8 7 6 10 10 C 1.47520 * 120.07064 * 180.02562 * 9 8 7 11 11 O 1.21600 * 119.99798 * 326.21142 * 10 9 8 12 12 N 1.34775 * 120.00512 * 145.94087 * 10 9 8 13 13 C 1.46922 * 120.62716 * 354.24555 * 12 10 9 14 14 C 1.52761 * 109.01313 * 233.58908 * 13 12 10 15 15 C 1.53040 * 109.37922 * 305.59273 * 14 13 12 16 16 N 1.46501 * 109.44566 * 181.25264 * 15 14 13 17 17 C 1.36942 * 120.00266 * 84.93938 * 16 15 14 18 18 H 1.07993 * 119.99703 * 359.97438 * 17 16 15 19 19 C 1.38807 * 120.00001 * 180.02562 * 17 16 15 20 20 N 1.31623 * 120.00001 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 120.00006 * 179.97438 * 19 17 16 22 22 H 1.48507 * 109.46990 * 59.99798 * 21 19 17 23 23 H 1.48501 * 109.47110 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.46846 * 299.99878 * 21 19 17 25 25 C 1.53035 * 109.54044 * 61.23791 * 15 14 13 26 26 C 1.46922 * 120.63331 * 174.53449 * 12 10 9 27 27 C 1.39795 * 119.86439 * 0.27330 * 9 8 7 28 28 C 1.37621 * 119.92769 * 359.42598 * 27 9 8 29 29 H 1.09000 * 109.47111 * 299.99817 * 1 2 3 30 30 H 1.09001 * 109.46716 * 60.00220 * 1 2 3 31 31 H 1.09001 * 109.47137 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47111 * 240.00183 * 2 1 3 33 33 H 1.09004 * 109.47469 * 300.00209 * 3 2 1 34 34 H 1.09002 * 109.47223 * 59.99628 * 3 2 1 35 35 H 1.08998 * 109.47079 * 179.97438 * 3 2 1 36 36 H 1.08998 * 109.47365 * 270.00240 * 5 4 2 37 37 H 1.09006 * 109.47182 * 30.00510 * 5 4 2 38 38 H 1.08997 * 109.46912 * 149.99845 * 5 4 2 39 39 H 1.08001 * 119.97076 * 359.97438 * 7 6 4 40 40 H 1.08000 * 120.03462 * 180.02562 * 8 7 6 41 41 H 1.08999 * 109.59091 * 353.42461 * 13 12 10 42 42 H 1.09002 * 109.58660 * 113.85021 * 13 12 10 43 43 H 1.08996 * 109.56622 * 185.55561 * 14 13 12 44 44 H 1.08997 * 109.38648 * 65.51712 * 14 13 12 45 45 H 1.09004 * 109.46083 * 301.21043 * 15 14 13 46 46 H 0.97008 * 120.00034 * 264.93757 * 16 15 14 47 47 H 0.97002 * 119.99286 * 180.02562 * 20 19 17 48 48 H 1.09000 * 109.50211 * 178.68138 * 25 15 14 49 49 H 1.09003 * 109.52457 * 58.60598 * 25 15 14 50 50 H 1.08997 * 109.58673 * 246.15221 * 26 12 10 51 51 H 1.09006 * 109.58732 * 6.43299 * 26 12 10 52 52 H 1.07994 * 120.03873 * 179.70201 * 27 9 8 53 53 H 1.08000 * 119.96519 * 180.31496 * 28 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 1.7625 -0.1262 2.5236 6 6 2.7246 -1.8819 1.0716 7 6 3.0624 -2.3603 -0.1914 8 6 3.7618 -3.5387 -0.3181 9 6 4.1336 -4.2552 0.8232 10 6 4.8839 -5.5184 0.6911 11 8 4.6777 -6.2517 -0.2567 12 7 5.8018 -5.8572 1.6180 13 6 6.1570 -4.9240 2.6957 14 6 7.6723 -4.7305 2.7071 15 6 8.3578 -6.0952 2.8055 16 7 9.8104 -5.9095 2.8467 17 6 10.4347 -5.6551 4.0387 18 1 9.8561 -5.5909 4.9483 19 6 11.8109 -5.4786 4.0777 20 7 12.5160 -5.5564 2.9689 21 14 12.6624 -5.1308 5.7036 22 1 12.4183 -6.2565 6.6409 23 1 14.1225 -4.9842 5.4763 24 1 12.1231 -3.8758 6.2861 25 6 7.9866 -6.9435 1.5871 26 6 6.4708 -7.1643 1.5662 27 6 3.7884 -3.7748 2.0899 28 6 3.0943 -2.5926 2.2101 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.6767 1.9564 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 3.1300 1.4424 0.0005 36 1 2.5792 0.5414 2.7982 37 1 0.8266 0.4324 2.5067 38 1 1.6912 -0.9324 3.2537 39 1 2.7753 -1.8061 -1.0728 40 1 4.0239 -3.9090 -1.2981 41 1 5.6689 -3.9647 2.5241 42 1 5.8365 -5.3332 3.6538 43 1 7.9556 -4.1184 3.5634 44 1 7.9806 -4.2340 1.7871 45 1 8.0306 -6.6014 3.7138 46 1 10.3301 -5.9669 2.0296 47 1 13.4778 -5.4334 2.9963 48 1 8.4937 -7.9066 1.6460 49 1 8.2916 -6.4270 0.6770 50 1 6.1764 -7.7599 2.4303 51 1 6.1876 -7.6838 0.6507 52 1 4.0700 -4.3286 2.9732 53 1 2.8317 -2.2184 3.1886 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000997420527.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:32:11 Heat of formation + Delta-G solvation = 3.942184 kcal Electronic energy + Delta-G solvation = -30426.123557 eV Core-core repulsion = 26490.592296 eV Total energy + Delta-G solvation = -3935.531261 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.62928 -40.38413 -38.74291 -37.79386 -36.15175 -34.03339 -33.61135 -32.62041 -31.60136 -31.07470 -30.33614 -28.06791 -27.58068 -26.53551 -24.92512 -24.29426 -23.70510 -22.87187 -21.75365 -20.84709 -20.35038 -19.11366 -18.64214 -18.13718 -17.21294 -16.80285 -16.57610 -16.16766 -15.80172 -15.66280 -15.51432 -15.36868 -15.29648 -14.98607 -14.78128 -14.74979 -14.39895 -14.24631 -13.94457 -13.82216 -13.47274 -13.37070 -13.24963 -13.09327 -12.95284 -12.89339 -12.78793 -12.71393 -12.57391 -12.22343 -12.21397 -12.16271 -11.99639 -11.88258 -11.66447 -11.45741 -11.30758 -10.98954 -10.89695 -10.62642 -9.89949 -9.66718 -8.99008 -8.23244 -7.91348 -5.20409 0.16834 0.48893 1.48832 1.51981 1.57839 1.79978 2.07278 2.13460 2.58312 2.92282 3.41461 3.58771 3.71952 3.83839 3.87737 3.92357 4.04243 4.10434 4.16716 4.19044 4.27517 4.32656 4.38140 4.40834 4.43970 4.51366 4.63262 4.66807 4.72246 4.74588 4.79010 4.80411 4.84195 4.88849 4.90631 4.96606 4.97308 5.04393 5.07510 5.09755 5.26002 5.27357 5.31002 5.35964 5.38548 5.49090 5.53228 5.56994 5.65769 5.78816 6.29757 6.33119 6.44187 6.50752 7.17373 7.35531 8.11353 8.34802 9.32261 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.013453 B = 0.002291 C = 0.002067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2080.751898 B =12219.128364 C =13542.040680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.129 3.871 3 C -0.158 4.158 4 N -0.618 5.618 5 C 0.081 3.919 6 C 0.242 3.758 7 C -0.215 4.215 8 C -0.025 4.025 9 C -0.218 4.218 10 C 0.561 3.439 11 O -0.593 6.593 12 N -0.603 5.603 13 C 0.105 3.895 14 C -0.140 4.140 15 C 0.174 3.826 16 N -0.739 5.739 17 C -0.234 4.234 18 H 0.081 0.919 19 C -0.081 4.081 20 N -0.974 5.974 21 Si 0.973 3.027 22 H -0.277 1.277 23 H -0.300 1.300 24 H -0.276 1.276 25 C -0.128 4.128 26 C 0.122 3.878 27 C -0.036 4.036 28 C -0.210 4.210 29 H 0.064 0.936 30 H 0.079 0.921 31 H 0.048 0.952 32 H 0.090 0.910 33 H 0.079 0.921 34 H 0.065 0.935 35 H 0.047 0.953 36 H 0.053 0.947 37 H 0.083 0.917 38 H 0.077 0.923 39 H 0.142 0.858 40 H 0.118 0.882 41 H 0.109 0.891 42 H 0.094 0.906 43 H 0.068 0.932 44 H 0.037 0.963 45 H 0.054 0.946 46 H 0.369 0.631 47 H 0.249 0.751 48 H 0.074 0.926 49 H 0.044 0.956 50 H 0.089 0.911 51 H 0.081 0.919 52 H 0.148 0.852 53 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.019 13.481 -1.944 32.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.026 3.974 3 C -0.216 4.216 4 N -0.326 5.326 5 C -0.061 4.061 6 C 0.136 3.864 7 C -0.237 4.237 8 C -0.045 4.045 9 C -0.223 4.223 10 C 0.353 3.647 11 O -0.475 6.475 12 N -0.334 5.334 13 C -0.018 4.018 14 C -0.181 4.181 15 C 0.066 3.934 16 N -0.378 5.378 17 C -0.366 4.366 18 H 0.099 0.901 19 C -0.273 4.273 20 N -0.625 5.625 21 Si 0.802 3.198 22 H -0.203 1.203 23 H -0.227 1.227 24 H -0.202 1.202 25 C -0.167 4.167 26 C 0.000 4.000 27 C -0.055 4.055 28 C -0.232 4.232 29 H 0.083 0.917 30 H 0.097 0.903 31 H 0.067 0.933 32 H 0.108 0.892 33 H 0.098 0.902 34 H 0.084 0.916 35 H 0.066 0.934 36 H 0.072 0.928 37 H 0.102 0.898 38 H 0.096 0.904 39 H 0.160 0.840 40 H 0.136 0.864 41 H 0.127 0.873 42 H 0.112 0.888 43 H 0.087 0.913 44 H 0.056 0.944 45 H 0.072 0.928 46 H 0.200 0.800 47 H 0.058 0.942 48 H 0.092 0.908 49 H 0.063 0.937 50 H 0.108 0.892 51 H 0.100 0.900 52 H 0.166 0.834 53 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -29.208 13.318 -2.187 32.175 hybrid contribution 1.490 -0.046 0.082 1.493 sum -27.718 13.272 -2.104 30.803 Atomic orbital electron populations 1.22147 0.94199 1.02066 1.03261 1.21288 0.94742 0.93536 0.87838 1.22126 1.01034 0.95096 1.03365 1.46741 1.57173 1.21420 1.07261 1.21831 1.01805 0.99387 0.83040 1.18146 0.88738 0.85799 0.93729 1.20742 1.07154 0.98995 0.96816 1.20925 0.93113 0.93046 0.97423 1.19505 1.09403 0.97779 0.95631 1.18720 0.79193 0.86008 0.80783 1.90702 1.69009 1.54805 1.32997 1.48088 1.39288 1.17494 1.28538 1.22292 0.94924 0.94439 0.90103 1.22388 0.94855 0.99651 1.01222 1.20422 0.83234 0.93528 0.96247 1.42682 1.02633 1.85599 1.06870 1.19617 0.90511 1.38444 0.88039 0.90105 1.25594 0.97416 1.04084 1.00197 1.69836 1.05833 1.58974 1.27812 0.85212 0.76799 0.78348 0.79415 1.20303 1.22687 1.20196 1.22054 0.95738 1.00674 0.98208 1.21543 0.90611 0.84389 1.03507 1.21406 0.93280 0.94876 0.95970 1.20858 1.06653 0.97251 0.98415 0.91671 0.90258 0.93279 0.89235 0.90206 0.91635 0.93362 0.92805 0.89847 0.90402 0.84031 0.86397 0.87302 0.88816 0.91292 0.94406 0.92775 0.79982 0.94236 0.90778 0.93690 0.89242 0.90008 0.83438 0.83039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.20 9.26 71.98 0.67 -0.54 16 2 C 0.13 1.28 3.18 44.99 0.14 1.42 16 3 C -0.16 -1.28 9.11 71.98 0.66 -0.63 16 4 N -0.62 -7.77 2.88 -698.09 -2.01 -9.78 16 5 C 0.08 0.67 9.15 127.77 1.17 1.84 16 6 C 0.24 4.23 6.54 38.47 0.25 4.48 16 7 C -0.21 -4.24 9.29 22.36 0.21 -4.04 16 8 C -0.03 -0.63 9.59 22.50 0.22 -0.42 16 9 C -0.22 -5.78 5.33 -20.08 -0.11 -5.88 16 10 C 0.56 18.06 7.39 86.69 0.64 18.70 16 11 O -0.59 -23.17 16.21 -4.03 -0.07 -23.23 16 12 N -0.60 -17.69 2.98 -823.52 -2.45 -20.14 16 13 C 0.10 2.67 4.72 86.22 0.41 3.08 16 14 C -0.14 -4.78 5.64 30.53 0.17 -4.60 16 15 C 0.17 6.72 2.73 45.02 0.12 6.84 16 16 N -0.74 -37.26 5.12 -322.82 -1.65 -38.92 16 17 C -0.23 -12.78 9.93 84.03 0.83 -11.95 16 18 H 0.08 4.14 7.83 -2.91 -0.02 4.12 16 19 C -0.08 -4.65 5.50 84.86 0.47 -4.19 16 20 N -0.97 -60.29 13.06 21.65 0.28 -60.01 16 21 Si 0.97 45.84 29.55 68.60 2.03 47.86 16 22 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 23 H -0.30 -14.45 7.11 99.48 0.71 -13.74 16 24 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 25 C -0.13 -4.44 5.55 30.67 0.17 -4.27 16 26 C 0.12 3.63 6.44 86.36 0.56 4.19 16 27 C -0.04 -0.74 7.34 22.50 0.17 -0.57 16 28 C -0.21 -3.56 9.22 22.36 0.21 -3.36 16 29 H 0.06 0.41 6.88 -2.39 -0.02 0.39 16 30 H 0.08 0.42 8.14 -2.39 -0.02 0.40 16 31 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 32 H 0.09 0.96 5.28 -2.39 -0.01 0.95 16 33 H 0.08 0.46 8.14 -2.39 -0.02 0.44 16 34 H 0.06 0.45 7.54 -2.39 -0.02 0.43 16 35 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 36 H 0.05 0.44 8.14 -2.39 -0.02 0.42 16 37 H 0.08 0.43 6.70 -2.38 -0.02 0.42 16 38 H 0.08 0.55 5.98 -2.39 -0.01 0.54 16 39 H 0.14 2.24 5.71 -2.91 -0.02 2.22 16 40 H 0.12 3.08 7.98 -2.91 -0.02 3.06 16 41 H 0.11 2.48 4.39 -2.39 -0.01 2.47 16 42 H 0.09 1.94 8.04 -2.39 -0.02 1.92 16 43 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 44 H 0.04 1.43 8.14 -2.39 -0.02 1.42 16 45 H 0.05 2.04 8.08 -2.38 -0.02 2.02 16 46 H 0.37 20.49 7.80 -92.70 -0.72 19.77 16 47 H 0.25 15.04 8.31 -92.71 -0.77 14.27 16 48 H 0.07 2.57 8.14 -2.39 -0.02 2.55 16 49 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 50 H 0.09 2.25 8.14 -2.39 -0.02 2.24 16 51 H 0.08 2.58 7.00 -2.38 -0.02 2.56 16 52 H 0.15 2.52 5.92 -2.91 -0.02 2.50 16 53 H 0.15 1.79 6.01 -2.91 -0.02 1.78 16 Total: -1.00 -72.59 407.89 3.27 -69.33 By element: Atomic # 1 Polarization: 34.58 SS G_CDS: 0.19 Total: 34.77 kcal Atomic # 6 Polarization: -6.83 SS G_CDS: 6.94 Total: 0.12 kcal Atomic # 7 Polarization: -123.01 SS G_CDS: -5.83 Total: -128.85 kcal Atomic # 8 Polarization: -23.17 SS G_CDS: -0.07 Total: -23.23 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 2.03 Total: 47.86 kcal Total: -72.59 3.27 -69.33 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997420527.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.270 kcal (2) G-P(sol) polarization free energy of solvation -72.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.327 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds