Wall clock time and date at job start Wed Apr 1 2020 04:34:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52997 * 109.47453 * 2 1 4 4 N 1.46500 * 109.47021 * 120.00059 * 2 1 3 5 5 C 1.46500 * 120.00047 * 294.80284 * 4 2 1 6 6 C 1.39048 * 120.00067 * 114.80413 * 4 2 1 7 7 C 1.39219 * 119.93065 * 358.36646 * 6 4 2 8 8 C 1.37612 * 120.06825 * 180.02562 * 7 6 4 9 9 C 1.39798 * 119.93143 * 359.97438 * 8 7 6 10 10 C 1.47520 * 120.06539 * 180.02562 * 9 8 7 11 11 O 1.21594 * 120.00096 * 335.65701 * 10 9 8 12 12 N 1.34777 * 119.99566 * 155.39279 * 10 9 8 13 13 C 1.46494 * 120.00295 * 355.03589 * 12 10 9 14 14 C 1.46497 * 119.99936 * 175.04388 * 12 10 9 15 15 C 1.53784 * 113.61656 * 217.49434 * 14 12 10 16 16 C 1.53784 * 87.08108 * 220.01956 * 15 14 12 17 17 N 1.46501 * 113.69235 * 139.99367 * 16 15 14 18 18 C 1.36934 * 120.00191 * 107.45953 * 17 16 15 19 19 H 1.07996 * 119.99791 * 0.02562 * 18 17 16 20 20 C 1.38814 * 119.99809 * 179.97438 * 18 17 16 21 21 N 1.31617 * 120.00202 * 0.02562 * 20 18 17 22 22 Si 1.86805 * 119.99792 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.46997 * 60.00089 * 22 20 18 24 24 H 1.48499 * 109.47114 * 180.02562 * 22 20 18 25 25 H 1.48497 * 109.47163 * 300.00097 * 22 20 18 26 26 C 1.53773 * 87.08307 * 25.42791 * 16 15 14 27 27 C 1.39788 * 119.86200 * 0.27749 * 9 8 7 28 28 C 1.37614 * 119.93160 * 359.46922 * 27 9 8 29 29 H 1.09002 * 109.47686 * 300.00283 * 1 2 3 30 30 H 1.09008 * 109.47196 * 60.00268 * 1 2 3 31 31 H 1.09002 * 109.47601 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47686 * 239.99717 * 2 1 3 33 33 H 1.09002 * 109.47363 * 300.00166 * 3 2 1 34 34 H 1.08999 * 109.47141 * 59.99970 * 3 2 1 35 35 H 1.08998 * 109.47280 * 179.97438 * 3 2 1 36 36 H 1.09001 * 109.47106 * 270.00181 * 5 4 2 37 37 H 1.08995 * 109.47172 * 30.00028 * 5 4 2 38 38 H 1.08999 * 109.47023 * 150.00041 * 5 4 2 39 39 H 1.07998 * 119.96904 * 359.97438 * 7 6 4 40 40 H 1.07998 * 120.03454 * 179.97438 * 8 7 6 41 41 H 1.09001 * 109.47144 * 96.06849 * 13 12 10 42 42 H 1.08996 * 109.47855 * 216.06837 * 13 12 10 43 43 H 1.09003 * 109.47140 * 336.06934 * 13 12 10 44 44 H 1.09002 * 112.85247 * 348.80006 * 14 12 10 45 45 H 1.09003 * 113.60981 * 334.56549 * 15 14 12 46 46 H 1.08992 * 113.61639 * 105.47094 * 15 14 12 47 47 H 1.09006 * 113.60893 * 270.88488 * 16 15 14 48 48 H 0.96996 * 119.99607 * 287.45906 * 17 16 15 49 49 H 0.96995 * 120.00020 * 179.97438 * 21 20 18 50 50 H 1.09004 * 113.62087 * 220.01927 * 26 16 15 51 51 H 1.09004 * 113.61184 * 89.11869 * 26 16 15 52 52 H 1.07999 * 120.03383 * 179.70167 * 27 9 8 53 53 H 1.07994 * 119.97167 * 180.23070 * 28 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0182 -0.6906 1.1962 5 6 1.7606 -0.1273 2.5238 6 6 2.7262 -1.8808 1.0715 7 6 2.9409 -2.4326 -0.1885 8 6 3.6408 -3.6107 -0.3152 9 6 4.1369 -4.2532 0.8230 10 6 4.8880 -5.5159 0.6906 11 8 4.7168 -6.2261 -0.2814 12 7 5.7680 -5.8796 1.6445 13 6 6.0594 -4.9719 2.7568 14 6 6.4333 -7.1826 1.5688 15 6 6.6256 -7.8565 2.9377 16 6 8.0122 -8.2960 2.4386 17 7 9.0614 -8.2019 3.4567 18 6 9.5707 -9.3403 4.0223 19 1 9.1992 -10.3074 3.7174 20 6 10.5652 -9.2511 4.9866 21 7 11.0182 -8.0724 5.3577 22 14 11.2605 -10.8041 5.7576 23 1 11.8617 -11.6554 4.6999 24 1 12.3016 -10.4397 6.7518 25 1 10.1704 -11.5515 6.4345 26 6 7.9661 -7.0881 1.4880 27 6 3.9151 -3.6993 2.0872 28 6 3.2190 -2.5183 2.2069 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5138 -0.8901 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 3.1300 1.4424 0.0005 36 1 2.5762 0.5413 2.7993 37 1 0.8241 0.4301 2.5064 38 1 1.6898 -0.9340 3.2533 39 1 2.5571 -1.9361 -1.0675 40 1 3.8066 -4.0385 -1.2929 41 1 5.4419 -5.2384 3.6145 42 1 7.1120 -5.0547 3.0273 43 1 5.8411 -3.9471 2.4563 44 1 5.9960 -7.8381 0.8156 45 1 6.6637 -7.1528 3.7692 46 1 5.9422 -8.6868 3.1155 47 1 8.0066 -9.2569 1.9240 48 1 9.3952 -7.3333 3.7302 49 1 11.7129 -8.0101 6.0318 50 1 8.3648 -7.2979 0.4955 51 1 8.3707 -6.1743 1.9233 52 1 4.2930 -4.1958 2.9687 53 1 3.0505 -2.0879 3.1829 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000999912826.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:34:48 Heat of formation + Delta-G solvation = 39.036143 kcal Electronic energy + Delta-G solvation = -29901.774112 eV Core-core repulsion = 25967.764639 eV Total energy + Delta-G solvation = -3934.009473 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.68680 -40.53853 -39.32909 -37.77060 -36.26258 -34.96005 -33.65515 -32.31013 -31.65535 -30.49506 -28.22373 -28.07008 -27.59971 -26.58870 -26.22987 -24.60770 -23.79297 -22.66311 -21.23859 -20.55967 -20.28352 -19.04079 -18.69121 -18.12250 -17.60331 -16.73833 -16.46018 -16.42478 -16.07351 -15.70767 -15.66439 -15.60863 -15.02808 -14.83666 -14.70507 -14.55343 -14.36441 -14.05304 -13.82705 -13.65637 -13.62026 -13.36375 -13.18171 -13.12178 -13.08100 -12.90793 -12.73708 -12.71846 -12.61305 -12.26716 -12.21751 -12.13864 -11.98508 -11.79127 -11.67952 -11.45408 -11.40223 -10.89473 -10.84759 -10.68400 -9.91363 -9.58856 -8.98035 -8.24876 -7.93249 -5.21501 0.13148 0.49850 1.49400 1.51828 1.57795 1.86527 2.04453 2.12308 2.58511 2.94289 3.38073 3.59871 3.71508 3.80327 3.82556 3.89643 3.95646 4.00392 4.15201 4.17199 4.25948 4.28776 4.30837 4.36250 4.44981 4.51809 4.59054 4.66894 4.71245 4.73934 4.74528 4.78780 4.81095 4.88664 4.90386 4.94060 4.96367 4.98762 5.09473 5.11002 5.14793 5.25289 5.29077 5.35376 5.36958 5.45139 5.49736 5.54969 5.70191 5.80089 6.28456 6.32173 6.46324 6.50186 7.18743 7.35288 8.09980 8.34785 9.29545 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.024446 B = 0.001812 C = 0.001734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.124880 B =15452.473825 C =16141.534541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.129 3.871 3 C -0.157 4.157 4 N -0.617 5.617 5 C 0.082 3.918 6 C 0.244 3.756 7 C -0.216 4.216 8 C -0.021 4.021 9 C -0.221 4.221 10 C 0.557 3.443 11 O -0.594 6.594 12 N -0.595 5.595 13 C 0.062 3.938 14 C 0.131 3.869 15 C -0.158 4.158 16 C 0.154 3.846 17 N -0.721 5.721 18 C -0.247 4.247 19 H 0.076 0.924 20 C -0.073 4.073 21 N -0.967 5.967 22 Si 0.972 3.028 23 H -0.280 1.280 24 H -0.296 1.296 25 H -0.278 1.278 26 C -0.151 4.151 27 C -0.046 4.046 28 C -0.212 4.212 29 H 0.064 0.936 30 H 0.079 0.921 31 H 0.047 0.953 32 H 0.091 0.909 33 H 0.079 0.921 34 H 0.064 0.936 35 H 0.049 0.951 36 H 0.056 0.944 37 H 0.082 0.918 38 H 0.075 0.925 39 H 0.143 0.857 40 H 0.120 0.880 41 H 0.078 0.922 42 H 0.067 0.933 43 H 0.102 0.898 44 H 0.105 0.895 45 H 0.083 0.917 46 H 0.065 0.935 47 H 0.077 0.923 48 H 0.375 0.625 49 H 0.251 0.749 50 H 0.066 0.934 51 H 0.081 0.919 52 H 0.156 0.844 53 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.879 22.824 -8.387 34.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.026 3.974 3 C -0.215 4.215 4 N -0.325 5.325 5 C -0.060 4.060 6 C 0.138 3.862 7 C -0.238 4.238 8 C -0.041 4.041 9 C -0.226 4.226 10 C 0.349 3.651 11 O -0.476 6.476 12 N -0.325 5.325 13 C -0.080 4.080 14 C 0.027 3.973 15 C -0.200 4.200 16 C 0.043 3.957 17 N -0.359 5.359 18 C -0.378 4.378 19 H 0.094 0.906 20 C -0.266 4.266 21 N -0.618 5.618 22 Si 0.801 3.199 23 H -0.206 1.206 24 H -0.222 1.222 25 H -0.204 1.204 26 C -0.191 4.191 27 C -0.065 4.065 28 C -0.234 4.234 29 H 0.083 0.917 30 H 0.098 0.902 31 H 0.066 0.934 32 H 0.108 0.892 33 H 0.098 0.902 34 H 0.083 0.917 35 H 0.068 0.932 36 H 0.075 0.925 37 H 0.101 0.899 38 H 0.093 0.907 39 H 0.160 0.840 40 H 0.138 0.862 41 H 0.096 0.904 42 H 0.086 0.914 43 H 0.120 0.880 44 H 0.123 0.877 45 H 0.101 0.899 46 H 0.084 0.916 47 H 0.095 0.905 48 H 0.208 0.792 49 H 0.060 0.940 50 H 0.085 0.915 51 H 0.099 0.901 52 H 0.173 0.827 53 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -24.021 22.477 -8.787 34.051 hybrid contribution 0.901 -0.724 0.521 1.267 sum -23.120 21.753 -8.267 32.804 Atomic orbital electron populations 1.22155 0.94331 1.02040 1.03266 1.21292 0.94684 0.93619 0.87820 1.22118 1.01096 0.94955 1.03364 1.46770 1.56953 1.21502 1.07269 1.21823 1.01862 0.99382 0.82963 1.18183 0.88602 0.85705 0.93750 1.20743 1.07710 0.98577 0.96811 1.20952 0.92314 0.93198 0.97591 1.19514 1.09481 0.97871 0.95783 1.18798 0.78843 0.86026 0.81428 1.90697 1.68471 1.56130 1.32321 1.47723 1.41738 1.17709 1.25297 1.22536 1.02360 0.94268 0.88801 1.22263 0.91860 0.84437 0.98745 1.24073 0.99496 1.00188 0.96197 1.21610 0.87811 0.96569 0.89690 1.42460 1.43054 1.05539 1.44828 1.19666 1.14620 0.87970 1.15582 0.90592 1.25533 1.00450 0.99508 1.01071 1.69794 1.32728 1.23737 1.35513 0.85237 0.77670 0.79172 0.77822 1.20590 1.22195 1.20438 1.23771 0.95501 0.99735 1.00095 1.21918 0.93482 0.94269 0.96800 1.20862 1.05918 0.98322 0.98342 0.91728 0.90222 0.93351 0.89153 0.90198 0.91670 0.93203 0.92530 0.89907 0.90661 0.83959 0.86232 0.90393 0.91420 0.87972 0.87690 0.89860 0.91644 0.90455 0.79227 0.94013 0.91548 0.90098 0.82692 0.83255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.09 9.26 71.98 0.67 -0.42 16 2 C 0.13 1.12 3.17 44.99 0.14 1.27 16 3 C -0.16 -1.04 9.11 71.98 0.66 -0.38 16 4 N -0.62 -7.07 2.88 -698.11 -2.01 -9.08 16 5 C 0.08 0.59 9.01 127.77 1.15 1.74 16 6 C 0.24 3.99 6.55 38.47 0.25 4.25 16 7 C -0.22 -3.98 9.27 22.36 0.21 -3.78 16 8 C -0.02 -0.49 9.58 22.50 0.22 -0.28 16 9 C -0.22 -5.69 5.50 -20.08 -0.11 -5.80 16 10 C 0.56 17.85 7.48 86.69 0.65 18.50 16 11 O -0.59 -23.34 16.10 -4.01 -0.06 -23.40 16 12 N -0.60 -17.51 3.08 -823.42 -2.54 -20.04 16 13 C 0.06 1.41 7.22 127.77 0.92 2.34 16 14 C 0.13 4.28 4.19 45.52 0.19 4.47 16 15 C -0.16 -5.43 7.36 31.12 0.23 -5.20 16 16 C 0.15 6.14 4.48 45.52 0.20 6.35 16 17 N -0.72 -36.08 5.40 -320.45 -1.73 -37.81 16 18 C -0.25 -13.64 9.97 84.03 0.84 -12.80 16 19 H 0.08 4.04 7.83 -2.91 -0.02 4.02 16 20 C -0.07 -4.18 5.50 84.86 0.47 -3.71 16 21 N -0.97 -58.50 13.06 21.65 0.28 -58.21 16 22 Si 0.97 45.99 29.55 68.60 2.03 48.01 16 23 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 24 H -0.30 -14.08 7.11 99.48 0.71 -13.38 16 25 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 26 C -0.15 -5.26 7.40 31.12 0.23 -5.03 16 27 C -0.05 -0.91 7.50 22.50 0.17 -0.74 16 28 C -0.21 -3.44 9.17 22.36 0.20 -3.24 16 29 H 0.06 0.37 6.88 -2.39 -0.02 0.35 16 30 H 0.08 0.36 8.14 -2.38 -0.02 0.34 16 31 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 32 H 0.09 0.85 5.30 -2.39 -0.01 0.84 16 33 H 0.08 0.34 8.14 -2.39 -0.02 0.33 16 34 H 0.06 0.36 7.54 -2.39 -0.02 0.34 16 35 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 36 H 0.06 0.38 8.14 -2.39 -0.02 0.36 16 37 H 0.08 0.37 6.70 -2.39 -0.02 0.35 16 38 H 0.07 0.50 6.24 -2.39 -0.01 0.49 16 39 H 0.14 2.04 5.73 -2.91 -0.02 2.03 16 40 H 0.12 2.99 7.83 -2.91 -0.02 2.97 16 41 H 0.08 1.52 7.05 -2.39 -0.02 1.50 16 42 H 0.07 1.69 6.61 -2.39 -0.02 1.67 16 43 H 0.10 1.98 5.08 -2.39 -0.01 1.97 16 44 H 0.11 3.64 7.27 -2.39 -0.02 3.63 16 45 H 0.08 2.88 6.79 -2.39 -0.02 2.86 16 46 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 47 H 0.08 3.10 8.10 -2.38 -0.02 3.08 16 48 H 0.38 19.94 7.92 -92.71 -0.73 19.21 16 49 H 0.25 14.78 8.31 -92.71 -0.77 14.01 16 50 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 51 H 0.08 2.83 6.83 -2.39 -0.02 2.82 16 52 H 0.16 2.64 4.45 -2.91 -0.01 2.63 16 53 H 0.15 1.69 6.15 -2.91 -0.02 1.68 16 Total: -1.00 -71.21 408.70 3.44 -67.77 By element: Atomic # 1 Polarization: 35.05 SS G_CDS: 0.19 Total: 35.25 kcal Atomic # 6 Polarization: -9.76 SS G_CDS: 7.28 Total: -2.48 kcal Atomic # 7 Polarization: -119.15 SS G_CDS: -6.00 Total: -125.15 kcal Atomic # 8 Polarization: -23.34 SS G_CDS: -0.06 Total: -23.40 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 2.03 Total: 48.01 kcal Total: -71.21 3.44 -67.77 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999912826.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.802 kcal (2) G-P(sol) polarization free energy of solvation -71.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.766 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds