Wall clock time and date at job start Wed Apr 1 2020 04:34:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.46894 * 2 1 4 4 N 1.46498 * 109.47094 * 180.02562 * 3 2 1 5 5 C 1.46505 * 119.99783 * 269.99488 * 4 3 2 6 6 C 1.39050 * 120.00551 * 89.99887 * 4 3 2 7 7 C 1.39217 * 119.93297 * 179.97438 * 6 4 3 8 8 C 1.37607 * 120.06576 * 179.97438 * 7 6 4 9 9 C 1.39790 * 119.93288 * 0.02562 * 8 7 6 10 10 C 1.47530 * 120.06698 * 179.97438 * 9 8 7 11 11 O 1.21593 * 120.00396 * 336.17117 * 10 9 8 12 12 N 1.34774 * 119.99739 * 155.89287 * 10 9 8 13 13 C 1.46505 * 120.00186 * 354.81383 * 12 10 9 14 14 C 1.46502 * 120.00063 * 174.81655 * 12 10 9 15 15 C 1.53780 * 113.61203 * 217.49730 * 14 12 10 16 16 C 1.53784 * 87.08060 * 220.01793 * 15 14 12 17 17 N 1.46499 * 113.69166 * 139.99367 * 16 15 14 18 18 C 1.36933 * 120.00109 * 107.46619 * 17 16 15 19 19 H 1.08002 * 119.99928 * 359.97438 * 18 17 16 20 20 C 1.38811 * 120.00274 * 179.97438 * 18 17 16 21 21 N 1.31619 * 119.99879 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00102 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47268 * 0.02562 * 22 20 18 24 24 H 1.48507 * 109.46959 * 120.00505 * 22 20 18 25 25 H 1.48500 * 109.47385 * 240.00328 * 22 20 18 26 26 C 1.53777 * 113.61347 * 120.00133 * 14 12 10 27 27 C 1.39796 * 119.86349 * 0.27137 * 9 8 7 28 28 C 1.37609 * 119.92626 * 359.42342 * 27 9 8 29 29 H 1.08999 * 109.47206 * 300.00143 * 1 2 3 30 30 H 1.08996 * 109.46856 * 60.00258 * 1 2 3 31 31 H 1.09004 * 109.46469 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47715 * 239.99795 * 2 1 3 33 33 H 1.09000 * 109.47318 * 119.99717 * 2 1 3 34 34 H 1.08999 * 109.47311 * 59.99921 * 3 2 1 35 35 H 1.09000 * 109.46906 * 299.99969 * 3 2 1 36 36 H 1.08999 * 109.47464 * 270.00230 * 5 4 3 37 37 H 1.08998 * 109.46735 * 30.00055 * 5 4 3 38 38 H 1.08996 * 109.47360 * 150.00088 * 5 4 3 39 39 H 1.07998 * 119.96495 * 359.97438 * 7 6 4 40 40 H 1.08002 * 120.03063 * 179.97438 * 8 7 6 41 41 H 1.09005 * 109.46931 * 95.77079 * 13 12 10 42 42 H 1.08994 * 109.47328 * 215.76924 * 13 12 10 43 43 H 1.09000 * 109.46862 * 335.77083 * 13 12 10 44 44 H 1.09002 * 112.84878 * 348.80074 * 14 12 10 45 45 H 1.09000 * 113.61938 * 334.56338 * 15 14 12 46 46 H 1.08997 * 113.61327 * 105.47155 * 15 14 12 47 47 H 1.09003 * 113.61479 * 270.88709 * 16 15 14 48 48 H 0.96998 * 119.99769 * 287.46019 * 17 16 15 49 49 H 0.96998 * 120.00156 * 179.97438 * 21 20 18 50 50 H 1.09003 * 113.61207 * 254.52989 * 26 14 12 51 51 H 1.08999 * 113.62089 * 25.43383 * 26 14 12 52 52 H 1.08003 * 120.03130 * 179.69965 * 27 9 8 53 53 H 1.08001 * 119.96099 * 180.27255 * 28 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4426 -0.0006 5 6 4.2380 1.4425 1.2679 6 6 4.1998 1.4428 -1.2051 7 6 5.5920 1.4434 -1.2039 8 6 6.2824 1.4430 -2.3942 9 6 5.5844 1.4426 -3.6054 10 6 6.3216 1.4428 -4.8833 11 8 7.4596 1.8687 -4.9287 12 7 5.7357 0.9657 -5.9993 13 6 4.4116 0.3433 -5.9227 14 6 6.4228 1.0694 -7.2890 15 6 5.4810 1.3741 -8.4659 16 6 6.3163 0.3796 -9.2895 17 7 5.5154 -0.4733 -10.1711 18 6 5.5333 -0.2669 -11.5247 19 1 6.1375 0.5250 -11.9423 20 6 4.7748 -1.0753 -12.3602 21 7 4.0381 -2.0400 -11.8513 22 14 4.7986 -0.7932 -14.2066 23 1 5.6990 0.3447 -14.5219 24 1 5.2913 -2.0173 -14.8880 25 1 3.4249 -0.4833 -14.6778 26 6 6.6889 -0.2903 -7.9563 27 6 4.1865 1.4483 -3.6032 28 6 3.5018 1.4423 -2.4096 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3632 -1.0277 0.0005 32 1 1.8935 -0.5138 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 1.6766 1.9564 0.8900 35 1 1.6766 1.9563 -0.8900 36 1 4.4197 2.4702 1.5826 37 1 3.6491 0.9286 2.0277 38 1 5.1903 0.9288 1.1372 39 1 6.1306 1.4441 -0.2678 40 1 7.3624 1.4439 -2.3926 41 1 3.6481 1.0825 -6.1653 42 1 4.3566 -0.4822 -6.6323 43 1 4.2451 -0.0334 -4.9135 44 1 7.2994 1.7161 -7.2508 45 1 4.4542 1.0486 -8.2992 46 1 5.5477 2.4015 -8.8238 47 1 7.1635 0.8383 -9.7994 48 1 4.9726 -1.1843 -9.7960 49 1 3.5078 -2.6047 -12.4350 50 1 7.7307 -0.6065 -7.9026 51 1 5.9923 -1.0708 -7.6502 52 1 3.6445 1.4529 -4.5374 53 1 2.4218 1.4422 -2.4073 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000999916039.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:34:52 Heat of formation + Delta-G solvation = 33.183202 kcal Electronic energy + Delta-G solvation = -29868.851655 eV Core-core repulsion = 25934.588379 eV Total energy + Delta-G solvation = -3934.263275 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.68213 -40.46159 -39.27269 -37.48778 -36.26727 -35.00467 -34.22866 -32.16242 -31.92561 -30.79737 -28.56021 -28.04811 -26.84662 -26.49487 -25.90775 -24.28460 -23.22842 -22.82691 -21.74204 -20.76481 -20.28962 -19.04438 -18.53067 -18.13069 -17.56899 -16.88567 -16.46998 -16.38575 -16.12114 -15.86816 -15.61959 -15.56492 -15.25282 -15.01132 -14.75854 -14.46844 -14.34688 -14.09223 -13.92629 -13.63040 -13.49389 -13.32491 -13.19345 -13.12886 -13.07854 -12.93209 -12.80041 -12.76162 -12.36949 -12.21314 -12.19203 -12.10882 -11.95671 -11.69494 -11.67901 -11.49116 -11.41045 -10.89582 -10.85325 -10.67748 -9.90819 -9.59058 -8.98320 -8.25940 -7.93935 -5.22048 0.12706 0.49929 1.48974 1.49433 1.59479 1.86587 2.04326 2.15172 2.57887 2.94501 3.37713 3.59939 3.78361 3.82024 3.83199 3.90788 3.95679 4.05346 4.11491 4.17841 4.26576 4.28655 4.30450 4.42959 4.45861 4.48423 4.58701 4.60878 4.66448 4.71627 4.74681 4.76513 4.79582 4.88682 4.92264 4.94984 4.96699 5.08363 5.09299 5.14651 5.22258 5.23057 5.26458 5.34102 5.44676 5.46166 5.49666 5.55170 5.70349 5.79273 6.28216 6.30051 6.45538 6.48764 7.18583 7.34883 8.09481 8.34141 9.29313 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.015919 B = 0.001981 C = 0.001798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1758.535551 B =14134.022426 C =15567.291881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.139 4.139 3 C 0.116 3.884 4 N -0.624 5.624 5 C 0.082 3.918 6 C 0.242 3.758 7 C -0.213 4.213 8 C -0.022 4.022 9 C -0.220 4.220 10 C 0.556 3.444 11 O -0.593 6.593 12 N -0.595 5.595 13 C 0.062 3.938 14 C 0.131 3.869 15 C -0.158 4.158 16 C 0.154 3.846 17 N -0.721 5.721 18 C -0.242 4.242 19 H 0.077 0.923 20 C -0.075 4.075 21 N -0.968 5.968 22 Si 0.971 3.029 23 H -0.267 1.267 24 H -0.295 1.295 25 H -0.293 1.293 26 C -0.151 4.151 27 C -0.048 4.048 28 C -0.211 4.211 29 H 0.063 0.937 30 H 0.058 0.942 31 H 0.054 0.946 32 H 0.053 0.947 33 H 0.062 0.938 34 H 0.092 0.908 35 H 0.080 0.920 36 H 0.057 0.943 37 H 0.084 0.916 38 H 0.072 0.928 39 H 0.145 0.855 40 H 0.120 0.880 41 H 0.078 0.922 42 H 0.067 0.933 43 H 0.102 0.898 44 H 0.105 0.895 45 H 0.083 0.917 46 H 0.065 0.935 47 H 0.078 0.922 48 H 0.375 0.625 49 H 0.251 0.749 50 H 0.066 0.934 51 H 0.081 0.919 52 H 0.156 0.844 53 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.468 7.254 31.774 33.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.178 4.178 3 C -0.007 4.007 4 N -0.331 5.331 5 C -0.060 4.060 6 C 0.136 3.864 7 C -0.236 4.236 8 C -0.041 4.041 9 C -0.225 4.225 10 C 0.349 3.651 11 O -0.476 6.476 12 N -0.325 5.325 13 C -0.080 4.080 14 C 0.027 3.973 15 C -0.200 4.200 16 C 0.044 3.956 17 N -0.359 5.359 18 C -0.374 4.374 19 H 0.094 0.906 20 C -0.268 4.268 21 N -0.618 5.618 22 Si 0.801 3.199 23 H -0.192 1.192 24 H -0.222 1.222 25 H -0.220 1.220 26 C -0.191 4.191 27 C -0.067 4.067 28 C -0.233 4.233 29 H 0.083 0.917 30 H 0.078 0.922 31 H 0.074 0.926 32 H 0.072 0.928 33 H 0.081 0.919 34 H 0.110 0.890 35 H 0.099 0.901 36 H 0.076 0.924 37 H 0.102 0.898 38 H 0.091 0.909 39 H 0.162 0.838 40 H 0.138 0.862 41 H 0.096 0.904 42 H 0.086 0.914 43 H 0.120 0.880 44 H 0.123 0.877 45 H 0.101 0.899 46 H 0.084 0.916 47 H 0.096 0.904 48 H 0.208 0.792 49 H 0.060 0.940 50 H 0.085 0.915 51 H 0.099 0.901 52 H 0.173 0.827 53 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -5.954 7.544 31.762 33.184 hybrid contribution -0.020 -0.452 -1.175 1.259 sum -5.973 7.092 30.588 31.962 Atomic orbital electron populations 1.21696 0.94348 1.02191 1.02501 1.21913 0.96681 0.97098 1.02092 1.21722 0.78010 0.96978 1.03954 1.46687 1.05766 1.77476 1.03179 1.21867 0.97623 1.02119 0.84377 1.18175 0.91246 0.90214 0.86791 1.20739 0.92389 1.11978 0.98447 1.20965 0.99789 0.92430 0.90965 1.19521 0.94533 1.16327 0.92150 1.18800 0.85411 0.76442 0.84455 1.90698 1.20010 1.50372 1.86512 1.47725 1.19747 1.58285 1.06713 1.22539 0.82749 0.98406 1.04260 1.22264 0.96427 0.97770 0.80835 1.24073 0.99683 1.00723 0.95487 1.21609 0.93506 0.91840 0.88686 1.42482 1.52954 1.37559 1.02912 1.19730 1.21295 1.11976 0.84431 0.90552 1.25540 1.00352 0.98588 1.02274 1.69808 1.33997 1.22867 1.35152 0.85099 0.77049 0.77213 0.80554 1.19158 1.22232 1.22029 1.23772 1.01580 0.97254 0.96514 1.21934 0.92286 0.92567 0.99873 1.20843 1.00730 1.11451 0.90293 0.91748 0.92246 0.92639 0.92821 0.91938 0.88988 0.90130 0.92410 0.89762 0.90950 0.83771 0.86195 0.90383 0.91398 0.88016 0.87676 0.89856 0.91618 0.90447 0.79230 0.94026 0.91540 0.90101 0.82689 0.83551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 9.91 71.98 0.71 -0.26 16 2 C -0.14 -1.14 6.26 30.60 0.19 -0.94 16 3 C 0.12 0.89 5.15 86.38 0.44 1.34 16 4 N -0.62 -6.94 2.99 -722.21 -2.16 -9.10 16 5 C 0.08 0.57 10.17 127.77 1.30 1.87 16 6 C 0.24 3.92 6.55 38.47 0.25 4.17 16 7 C -0.21 -3.85 9.18 22.36 0.21 -3.65 16 8 C -0.02 -0.51 9.58 22.50 0.22 -0.30 16 9 C -0.22 -5.65 5.50 -20.07 -0.11 -5.76 16 10 C 0.56 17.80 7.49 86.69 0.65 18.45 16 11 O -0.59 -23.26 16.09 -4.01 -0.06 -23.33 16 12 N -0.60 -17.46 3.08 -823.40 -2.54 -20.00 16 13 C 0.06 1.41 7.22 127.77 0.92 2.34 16 14 C 0.13 4.26 4.19 45.52 0.19 4.46 16 15 C -0.16 -5.42 7.36 31.12 0.23 -5.19 16 16 C 0.15 6.14 4.48 45.52 0.20 6.34 16 17 N -0.72 -36.01 5.40 -320.44 -1.73 -37.74 16 18 C -0.24 -13.38 9.97 84.03 0.84 -12.55 16 19 H 0.08 4.07 7.83 -2.91 -0.02 4.04 16 20 C -0.08 -4.30 5.50 84.86 0.47 -3.83 16 21 N -0.97 -58.53 13.06 21.65 0.28 -58.25 16 22 Si 0.97 46.05 29.55 68.60 2.03 48.07 16 23 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 24 H -0.29 -14.03 7.11 99.48 0.71 -13.33 16 25 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 26 C -0.15 -5.25 7.40 31.12 0.23 -5.02 16 27 C -0.05 -0.95 7.51 22.50 0.17 -0.78 16 28 C -0.21 -3.45 9.18 22.36 0.21 -3.25 16 29 H 0.06 0.31 8.14 -2.39 -0.02 0.29 16 30 H 0.06 0.38 8.14 -2.39 -0.02 0.36 16 31 H 0.05 0.41 8.14 -2.39 -0.02 0.39 16 32 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 33 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 34 H 0.09 0.44 8.07 -2.39 -0.02 0.42 16 35 H 0.08 0.63 6.17 -2.39 -0.01 0.61 16 36 H 0.06 0.35 8.14 -2.39 -0.02 0.33 16 37 H 0.08 0.32 8.07 -2.39 -0.02 0.30 16 38 H 0.07 0.51 6.17 -2.39 -0.01 0.49 16 39 H 0.14 1.96 6.11 -2.91 -0.02 1.94 16 40 H 0.12 2.98 7.83 -2.91 -0.02 2.95 16 41 H 0.08 1.52 7.03 -2.38 -0.02 1.50 16 42 H 0.07 1.69 6.60 -2.39 -0.02 1.68 16 43 H 0.10 1.97 5.11 -2.39 -0.01 1.96 16 44 H 0.11 3.64 7.27 -2.39 -0.02 3.62 16 45 H 0.08 2.87 6.79 -2.39 -0.02 2.85 16 46 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 47 H 0.08 3.09 8.10 -2.39 -0.02 3.07 16 48 H 0.38 19.91 7.92 -92.71 -0.73 19.17 16 49 H 0.25 14.70 8.31 -92.71 -0.77 13.93 16 50 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 51 H 0.08 2.82 6.83 -2.39 -0.02 2.81 16 52 H 0.16 2.66 4.40 -2.91 -0.01 2.64 16 53 H 0.15 1.76 6.11 -2.91 -0.02 1.74 16 Total: -1.00 -71.30 413.96 3.31 -67.99 By element: Atomic # 1 Polarization: 34.72 SS G_CDS: 0.18 Total: 34.90 kcal Atomic # 6 Polarization: -9.86 SS G_CDS: 7.31 Total: -2.55 kcal Atomic # 7 Polarization: -118.94 SS G_CDS: -6.15 Total: -125.09 kcal Atomic # 8 Polarization: -23.26 SS G_CDS: -0.06 Total: -23.33 kcal Atomic # 14 Polarization: 46.05 SS G_CDS: 2.03 Total: 48.07 kcal Total: -71.30 3.31 -67.99 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999916039.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.172 kcal (2) G-P(sol) polarization free energy of solvation -71.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.989 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds