Wall clock time and date at job start Wed Apr 1 2020 04:32:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.46999 * 2 1 4 4 N 1.46500 * 109.46672 * 120.00232 * 2 1 3 5 5 C 1.46496 * 120.00041 * 294.54585 * 4 2 1 6 6 C 1.39047 * 120.00014 * 114.55159 * 4 2 1 7 7 C 1.39218 * 119.93027 * 5.43303 * 6 4 2 8 8 C 1.37610 * 120.07032 * 179.97438 * 7 6 4 9 9 C 1.39793 * 119.92820 * 0.02797 * 8 7 6 10 10 C 1.47526 * 120.06899 * 180.02562 * 9 8 7 11 11 O 1.21590 * 119.99719 * 326.92442 * 10 9 8 12 12 N 1.34774 * 119.99888 * 146.92866 * 10 9 8 13 13 C 1.46921 * 120.63500 * 354.55568 * 12 10 9 14 14 C 1.53197 * 108.77789 * 233.59067 * 13 12 10 15 15 C 1.53038 * 109.30875 * 305.36584 * 14 13 12 16 16 C 1.53033 * 109.54249 * 61.36415 * 15 14 13 17 17 H 1.09004 * 109.49678 * 58.58301 * 16 15 14 18 18 N 1.46504 * 109.50022 * 178.64740 * 16 15 14 19 19 C 1.36936 * 120.00152 * 204.93044 * 18 16 15 20 20 H 1.08002 * 120.00063 * 0.02562 * 19 18 16 21 21 C 1.38810 * 120.00005 * 179.97438 * 19 18 16 22 22 N 1.31611 * 120.00093 * 180.02562 * 21 19 18 23 23 Si 1.86805 * 119.99825 * 0.02562 * 21 19 18 24 24 H 1.48495 * 109.46957 * 89.99995 * 23 21 19 25 25 H 1.48504 * 109.46914 * 209.99495 * 23 21 19 26 26 H 1.48497 * 109.47266 * 329.99681 * 23 21 19 27 27 C 1.46930 * 120.62541 * 174.53695 * 12 10 9 28 28 C 1.39803 * 119.86429 * 0.26761 * 9 8 7 29 29 C 1.37610 * 119.92467 * 359.42945 * 28 9 8 30 30 H 1.09004 * 109.46733 * 60.00002 * 1 2 3 31 31 H 1.08998 * 109.47417 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47221 * 300.00106 * 1 2 3 33 33 H 1.08994 * 109.46812 * 240.00156 * 2 1 3 34 34 H 1.09004 * 109.46884 * 179.97438 * 3 2 1 35 35 H 1.08994 * 109.47641 * 300.00068 * 3 2 1 36 36 H 1.08999 * 109.46769 * 60.00517 * 3 2 1 37 37 H 1.09003 * 109.47336 * 270.00398 * 5 4 2 38 38 H 1.09004 * 109.47033 * 30.00703 * 5 4 2 39 39 H 1.08999 * 109.46888 * 150.00384 * 5 4 2 40 40 H 1.07998 * 119.96705 * 0.02562 * 7 6 4 41 41 H 1.07994 * 120.03933 * 179.97438 * 8 7 6 42 42 H 1.08997 * 109.58599 * 113.80099 * 13 12 10 43 43 H 1.08998 * 109.58815 * 353.37648 * 13 12 10 44 44 H 1.08993 * 109.50000 * 185.41400 * 14 13 12 45 45 H 1.08997 * 109.52465 * 65.32899 * 14 13 12 46 46 H 1.08999 * 109.45841 * 301.34146 * 15 14 13 47 47 H 1.09008 * 109.44824 * 181.38053 * 15 14 13 48 48 H 0.97005 * 119.99545 * 24.93823 * 18 16 15 49 49 H 0.97002 * 119.99962 * 180.02562 * 22 21 19 50 50 H 1.08993 * 109.58952 * 6.62721 * 27 12 10 51 51 H 1.09003 * 109.58629 * 246.19512 * 27 12 10 52 52 H 1.07999 * 120.03617 * 179.72946 * 28 9 8 53 53 H 1.07997 * 119.95957 * 180.29586 * 29 28 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 1.7655 -0.1244 2.5234 6 6 2.7217 -1.8836 1.0717 7 6 3.0597 -2.3622 -0.1911 8 6 3.7563 -3.5422 -0.3176 9 6 4.1241 -4.2608 0.8237 10 6 4.8714 -5.5259 0.6917 11 8 4.6744 -6.2515 -0.2639 12 7 5.7723 -5.8774 1.6305 13 6 6.1083 -4.9589 2.7269 14 6 7.6280 -4.7697 2.7634 15 6 8.3062 -6.1382 2.8598 16 6 7.9530 -6.9725 1.6265 17 1 8.2757 -6.4475 0.7274 18 7 8.6285 -8.2702 1.7041 19 6 8.8991 -8.9708 0.5591 20 1 8.6149 -8.5665 -0.4013 21 6 9.5397 -10.2001 0.6326 22 7 9.8002 -10.8732 -0.4680 23 14 10.0320 -10.8989 2.2936 24 1 8.9215 -11.7248 2.8318 25 1 11.2445 -11.7418 2.1363 26 1 10.3213 -9.7858 3.2329 27 6 6.4369 -7.1868 1.5770 28 6 3.7778 -3.7807 2.0902 29 6 3.0866 -2.5969 2.2102 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 3.1301 1.4425 0.0005 35 1 1.6767 1.9564 -0.8899 36 1 1.6767 1.9562 0.8900 37 1 2.5841 0.5416 2.7963 38 1 0.8309 0.4363 2.5072 39 1 1.6933 -0.9299 3.2543 40 1 2.7757 -1.8064 -1.0725 41 1 4.0179 -3.9132 -1.2975 42 1 5.7696 -5.3803 3.6733 43 1 5.6242 -3.9969 2.5589 44 1 7.8989 -4.1675 3.6306 45 1 7.9543 -4.2652 1.8540 46 1 7.9611 -6.6521 3.7570 47 1 9.3869 -6.0049 2.9107 48 1 8.8840 -8.6331 2.5667 49 1 10.2476 -11.7324 -0.4166 50 1 6.1697 -7.6946 0.6504 51 1 6.1251 -7.7899 2.4298 52 1 4.0567 -4.3359 2.9736 53 1 2.8229 -2.2231 3.1886 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001001060274.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:32:35 Heat of formation + Delta-G solvation = 6.714444 kcal Electronic energy + Delta-G solvation = -30503.942863 eV Core-core repulsion = 26568.531816 eV Total energy + Delta-G solvation = -3935.411047 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.64306 -40.39258 -38.77793 -37.79514 -36.34158 -34.13648 -33.62991 -32.91048 -32.24493 -30.81610 -30.08321 -28.06228 -27.63578 -26.36812 -25.65992 -24.10480 -23.21860 -22.96210 -21.88771 -20.89804 -20.38972 -19.58078 -18.64856 -18.12674 -17.22843 -16.73045 -16.66182 -16.31114 -15.90912 -15.71428 -15.58179 -15.43962 -15.18832 -14.91380 -14.84740 -14.69032 -14.37825 -14.29326 -13.96599 -13.82358 -13.80449 -13.55573 -13.46538 -13.16278 -12.99991 -12.95636 -12.89044 -12.71319 -12.54446 -12.21306 -12.09029 -12.00627 -11.88503 -11.85308 -11.67655 -11.44361 -11.38395 -11.15837 -10.95044 -10.64585 -9.89611 -9.82263 -9.25852 -8.22713 -8.04867 -5.41381 0.15728 0.48033 1.36022 1.42347 1.49439 1.82194 2.05647 2.13680 2.47006 2.91136 3.25318 3.51823 3.62832 3.72434 3.88044 3.97744 3.99870 4.08852 4.13303 4.17511 4.26968 4.32268 4.33648 4.35558 4.43370 4.51974 4.61830 4.66294 4.71057 4.74786 4.75292 4.80251 4.86553 4.91746 4.92314 4.97502 4.98335 5.04229 5.09950 5.12569 5.25810 5.29329 5.34248 5.36542 5.38735 5.44440 5.49201 5.58962 5.74093 5.78109 6.18677 6.33787 6.48729 6.52048 7.03805 7.21125 7.76125 7.99786 9.17060 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.026115 B = 0.002097 C = 0.002015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.907584 B =13349.602228 C =13890.025322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.128 3.872 3 C -0.157 4.157 4 N -0.617 5.617 5 C 0.081 3.919 6 C 0.244 3.756 7 C -0.213 4.213 8 C -0.029 4.029 9 C -0.214 4.214 10 C 0.550 3.450 11 O -0.605 6.605 12 N -0.601 5.601 13 C 0.087 3.913 14 C -0.123 4.123 15 C -0.120 4.120 16 C 0.169 3.831 17 H 0.024 0.976 18 N -0.742 5.742 19 C -0.239 4.239 20 H 0.041 0.959 21 C -0.067 4.067 22 N -0.986 5.986 23 Si 0.966 3.034 24 H -0.277 1.277 25 H -0.294 1.294 26 H -0.242 1.242 27 C 0.105 3.895 28 C -0.034 4.034 29 C -0.204 4.204 30 H 0.077 0.923 31 H 0.046 0.954 32 H 0.066 0.934 33 H 0.087 0.913 34 H 0.050 0.950 35 H 0.077 0.923 36 H 0.066 0.934 37 H 0.058 0.942 38 H 0.081 0.919 39 H 0.079 0.921 40 H 0.140 0.860 41 H 0.109 0.891 42 H 0.098 0.902 43 H 0.119 0.881 44 H 0.117 0.883 45 H 0.053 0.947 46 H 0.081 0.919 47 H 0.068 0.932 48 H 0.371 0.629 49 H 0.259 0.741 50 H 0.040 0.960 51 H 0.073 0.927 52 H 0.154 0.846 53 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.558 31.858 13.599 39.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.025 3.975 3 C -0.215 4.215 4 N -0.325 5.325 5 C -0.061 4.061 6 C 0.138 3.862 7 C -0.236 4.236 8 C -0.049 4.049 9 C -0.219 4.219 10 C 0.342 3.658 11 O -0.487 6.487 12 N -0.333 5.333 13 C -0.034 4.034 14 C -0.162 4.162 15 C -0.158 4.158 16 C 0.060 3.940 17 H 0.042 0.958 18 N -0.386 5.386 19 C -0.370 4.370 20 H 0.059 0.941 21 C -0.258 4.258 22 N -0.635 5.635 23 Si 0.792 3.208 24 H -0.203 1.203 25 H -0.221 1.221 26 H -0.166 1.166 27 C -0.020 4.020 28 C -0.053 4.053 29 C -0.226 4.226 30 H 0.096 0.904 31 H 0.065 0.935 32 H 0.085 0.915 33 H 0.105 0.895 34 H 0.069 0.931 35 H 0.096 0.904 36 H 0.085 0.915 37 H 0.076 0.924 38 H 0.100 0.900 39 H 0.098 0.902 40 H 0.158 0.842 41 H 0.127 0.873 42 H 0.116 0.884 43 H 0.136 0.864 44 H 0.135 0.865 45 H 0.072 0.928 46 H 0.100 0.900 47 H 0.086 0.914 48 H 0.206 0.794 49 H 0.068 0.932 50 H 0.059 0.941 51 H 0.091 0.909 52 H 0.172 0.828 53 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -19.739 31.651 12.931 39.479 hybrid contribution 0.632 -1.523 -0.421 1.702 sum -19.107 30.128 12.509 37.806 Atomic orbital electron populations 1.22155 0.94396 1.01951 1.03274 1.21276 0.94616 0.93711 0.87881 1.22111 1.01149 0.94845 1.03361 1.46736 1.57203 1.21210 1.07331 1.21857 1.01917 0.99439 0.82853 1.18127 0.88684 0.85826 0.93599 1.20703 1.07048 0.98728 0.97074 1.20893 0.93439 0.93267 0.97264 1.19442 1.09471 0.96977 0.95998 1.19034 0.79380 0.86320 0.81114 1.90748 1.68621 1.55800 1.33566 1.48148 1.40306 1.17399 1.27460 1.22685 0.96565 0.94721 0.89387 1.21906 0.94312 0.96178 1.03765 1.21796 1.01267 0.96083 0.96660 1.20629 0.89687 0.85710 0.97955 0.95761 1.42618 1.70605 1.20823 1.04552 1.18947 1.31057 1.00140 0.86815 0.94118 1.25668 1.01216 0.97546 1.01412 1.69926 1.48741 1.15821 1.29057 0.85255 0.77415 0.78675 0.79449 1.20298 1.22098 1.16623 1.22174 0.94483 0.84178 1.01191 1.21428 0.93369 0.94890 0.95622 1.20872 1.06306 0.96913 0.98472 0.90409 0.93513 0.91492 0.89509 0.93095 0.90415 0.91454 0.92354 0.90041 0.90249 0.84233 0.87316 0.88404 0.86375 0.86479 0.92834 0.90021 0.91366 0.79434 0.93226 0.94130 0.90894 0.82847 0.82364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.15 9.26 71.98 0.67 -0.49 16 2 C 0.13 1.15 3.18 44.99 0.14 1.29 16 3 C -0.16 -1.01 9.11 71.98 0.66 -0.35 16 4 N -0.62 -6.65 2.88 -698.10 -2.01 -8.66 16 5 C 0.08 0.45 9.16 127.77 1.17 1.62 16 6 C 0.24 3.89 6.54 38.47 0.25 4.15 16 7 C -0.21 -4.23 9.29 22.36 0.21 -4.02 16 8 C -0.03 -0.76 9.59 22.50 0.22 -0.55 16 9 C -0.21 -5.90 5.37 -20.07 -0.11 -6.01 16 10 C 0.55 20.33 7.40 86.69 0.64 20.97 16 11 O -0.60 -29.20 16.19 -4.00 -0.06 -29.27 16 12 N -0.60 -19.56 2.97 -822.67 -2.45 -22.00 16 13 C 0.09 1.76 4.74 86.37 0.41 2.17 16 14 C -0.12 -2.53 6.08 30.67 0.19 -2.35 16 15 C -0.12 -3.34 5.35 30.62 0.16 -3.18 16 16 C 0.17 6.90 2.92 45.07 0.13 7.03 16 17 H 0.02 1.14 8.08 -2.38 -0.02 1.12 16 18 N -0.74 -36.15 4.93 -322.56 -1.59 -37.74 16 19 C -0.24 -14.56 10.41 84.03 0.88 -13.68 16 20 H 0.04 2.83 8.06 -2.91 -0.02 2.80 16 21 C -0.07 -4.15 5.50 84.86 0.47 -3.68 16 22 N -0.99 -66.32 13.97 21.65 0.30 -66.01 16 23 Si 0.97 46.43 27.74 68.60 1.90 48.33 16 24 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 25 H -0.29 -14.26 7.11 99.48 0.71 -13.55 16 26 H -0.24 -10.16 6.52 99.48 0.65 -9.51 16 27 C 0.11 4.24 6.03 86.36 0.52 4.76 16 28 C -0.03 -0.64 7.34 22.50 0.17 -0.47 16 29 C -0.20 -2.94 9.22 22.36 0.21 -2.74 16 30 H 0.08 0.41 8.14 -2.38 -0.02 0.39 16 31 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 32 H 0.07 0.37 6.89 -2.39 -0.02 0.35 16 33 H 0.09 0.91 5.28 -2.39 -0.01 0.90 16 34 H 0.05 0.45 8.14 -2.38 -0.02 0.43 16 35 H 0.08 0.36 8.14 -2.39 -0.02 0.34 16 36 H 0.07 0.33 7.53 -2.39 -0.02 0.31 16 37 H 0.06 0.28 8.14 -2.39 -0.02 0.26 16 38 H 0.08 0.25 6.71 -2.38 -0.02 0.24 16 39 H 0.08 0.33 5.97 -2.39 -0.01 0.32 16 40 H 0.14 2.27 5.71 -2.91 -0.02 2.26 16 41 H 0.11 3.24 7.96 -2.91 -0.02 3.22 16 42 H 0.10 1.46 8.03 -2.39 -0.02 1.44 16 43 H 0.12 1.95 4.30 -2.39 -0.01 1.94 16 44 H 0.12 1.49 8.14 -2.39 -0.02 1.47 16 45 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 46 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 47 H 0.07 1.92 8.14 -2.38 -0.02 1.90 16 48 H 0.37 16.60 5.66 -92.70 -0.52 16.08 16 49 H 0.26 16.44 8.31 -92.71 -0.77 15.67 16 50 H 0.04 2.06 6.99 -2.39 -0.02 2.04 16 51 H 0.07 2.71 8.14 -2.39 -0.02 2.69 16 52 H 0.15 2.21 5.79 -2.91 -0.02 2.19 16 53 H 0.16 1.29 6.01 -2.91 -0.02 1.27 16 Total: -1.00 -86.28 404.60 3.40 -82.88 By element: Atomic # 1 Polarization: 27.66 SS G_CDS: 0.33 Total: 28.00 kcal Atomic # 6 Polarization: -2.49 SS G_CDS: 6.97 Total: 4.48 kcal Atomic # 7 Polarization: -128.68 SS G_CDS: -5.74 Total: -134.42 kcal Atomic # 8 Polarization: -29.20 SS G_CDS: -0.06 Total: -29.27 kcal Atomic # 14 Polarization: 46.43 SS G_CDS: 1.90 Total: 48.33 kcal Total: -86.28 3.40 -82.88 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001001060274.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.599 kcal (2) G-P(sol) polarization free energy of solvation -86.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.885 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds