Wall clock time and date at job start Wed Apr 1 2020 04:32:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.46865 * 2 1 4 4 N 1.46501 * 109.47063 * 180.02562 * 3 2 1 5 5 C 1.46498 * 119.99884 * 270.00421 * 4 3 2 6 6 C 1.39045 * 119.99917 * 89.99894 * 4 3 2 7 7 C 1.39223 * 119.92926 * 179.97438 * 6 4 3 8 8 C 1.37606 * 120.06950 * 180.02562 * 7 6 4 9 9 C 1.39794 * 119.92927 * 0.02562 * 8 7 6 10 10 C 1.47525 * 120.06884 * 179.97438 * 9 8 7 11 11 O 1.21592 * 120.00531 * 318.75813 * 10 9 8 12 12 N 1.34779 * 119.99838 * 138.74556 * 10 9 8 13 13 C 1.46930 * 120.63132 * 354.17644 * 12 10 9 14 14 C 1.53196 * 108.77178 * 233.57921 * 13 12 10 15 15 C 1.53032 * 109.31351 * 305.36489 * 14 13 12 16 16 C 1.53034 * 109.54262 * 61.36475 * 15 14 13 17 17 H 1.09001 * 109.49900 * 58.58220 * 16 15 14 18 18 N 1.46500 * 109.50240 * 178.64918 * 16 15 14 19 19 C 1.36935 * 120.00498 * 204.93234 * 18 16 15 20 20 H 1.08000 * 119.99642 * 0.02562 * 19 18 16 21 21 C 1.38814 * 120.00186 * 180.02562 * 19 18 16 22 22 N 1.31618 * 119.99869 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99829 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.46967 * 90.00206 * 23 21 19 25 25 H 1.48504 * 109.46856 * 210.00085 * 23 21 19 26 26 H 1.48501 * 109.47009 * 329.99665 * 23 21 19 27 27 C 1.46931 * 120.63078 * 174.14233 * 12 10 9 28 28 C 1.39799 * 119.86542 * 0.28118 * 9 8 7 29 29 C 1.37610 * 119.92263 * 359.41716 * 28 9 8 30 30 H 1.09002 * 109.47611 * 299.99706 * 1 2 3 31 31 H 1.09001 * 109.47607 * 59.99802 * 1 2 3 32 32 H 1.09009 * 109.47122 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.46874 * 240.00379 * 2 1 3 34 34 H 1.08992 * 109.47446 * 120.00073 * 2 1 3 35 35 H 1.09001 * 109.47065 * 60.00496 * 3 2 1 36 36 H 1.09001 * 109.47170 * 300.00466 * 3 2 1 37 37 H 1.09008 * 109.47046 * 269.99568 * 5 4 3 38 38 H 1.08994 * 109.47547 * 29.99557 * 5 4 3 39 39 H 1.08998 * 109.47248 * 150.00086 * 5 4 3 40 40 H 1.08003 * 119.96712 * 0.02930 * 7 6 4 41 41 H 1.08005 * 120.03701 * 180.02562 * 8 7 6 42 42 H 1.08995 * 109.58985 * 113.79252 * 13 12 10 43 43 H 1.09000 * 109.58362 * 353.36130 * 13 12 10 44 44 H 1.09001 * 109.49820 * 185.40645 * 14 13 12 45 45 H 1.09001 * 109.52343 * 65.33154 * 14 13 12 46 46 H 1.09001 * 109.45850 * 301.34056 * 15 14 13 47 47 H 1.09002 * 109.44754 * 181.38150 * 15 14 13 48 48 H 0.97006 * 119.99420 * 24.94164 * 18 16 15 49 49 H 0.96997 * 119.99728 * 180.02562 * 22 21 19 50 50 H 1.08997 * 109.58157 * 6.63293 * 27 12 10 51 51 H 1.08999 * 109.58673 * 246.20841 * 27 12 10 52 52 H 1.07993 * 120.03737 * 179.72339 * 28 9 8 53 53 H 1.08001 * 119.96041 * 180.29981 * 29 28 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4426 -0.0006 5 6 4.2379 1.4423 1.2678 6 6 4.1996 1.4428 -1.2051 7 6 5.5918 1.4434 -1.2040 8 6 6.2823 1.4441 -2.3943 9 6 5.5842 1.4448 -3.6055 10 6 6.3213 1.4461 -4.8834 11 8 7.3107 2.1408 -5.0140 12 7 5.8982 0.6770 -5.9062 13 6 4.7829 -0.2622 -5.7251 14 6 5.2350 -1.6562 -6.1713 15 6 5.7671 -1.5812 -7.6042 16 6 6.9752 -0.6430 -7.6531 17 1 7.7475 -1.0087 -6.9763 18 7 7.5037 -0.5969 -9.0187 19 6 8.8163 -0.2722 -9.2344 20 1 9.4622 -0.0504 -8.3977 21 6 9.3168 -0.2280 -10.5284 22 7 8.5296 -0.4977 -11.5481 23 14 11.1077 0.2144 -10.8225 24 1 11.9310 -1.0214 -10.8118 25 1 11.2416 0.8870 -12.1397 26 1 11.5742 1.1294 -9.7499 27 6 6.5430 0.7625 -7.2237 28 6 4.1863 1.4507 -3.6033 29 6 3.5017 1.4436 -2.4096 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 1.6766 1.9563 0.8900 36 1 1.6765 1.9564 -0.8899 37 1 4.4197 2.4700 1.5826 38 1 3.6492 0.9284 2.0276 39 1 5.1903 0.9286 1.1370 40 1 6.1306 1.4432 -0.2679 41 1 7.3623 1.4441 -2.3928 42 1 3.9341 0.0575 -6.3294 43 1 4.4959 -0.2902 -4.6739 44 1 4.3891 -2.3427 -6.1328 45 1 6.0234 -2.0130 -5.5087 46 1 4.9856 -1.2015 -8.2624 47 1 6.0666 -2.5764 -7.9327 48 1 6.9235 -0.7963 -9.7702 49 1 8.8794 -0.4672 -12.4522 50 1 7.4171 1.4106 -7.1613 51 1 5.8376 1.1658 -7.9502 52 1 3.6442 1.4557 -4.5373 53 1 2.4217 1.4433 -2.4072 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001001074621.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:32:44 Heat of formation + Delta-G solvation = -9.266299 kcal Electronic energy + Delta-G solvation = -30396.960930 eV Core-core repulsion = 26460.856907 eV Total energy + Delta-G solvation = -3936.104024 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -41.57566 -40.29083 -38.68189 -37.47941 -36.21189 -34.41003 -33.84489 -32.74030 -32.05549 -31.26704 -29.71487 -28.39861 -27.01820 -25.89916 -25.54394 -23.58086 -23.25815 -22.88644 -22.05433 -21.30843 -20.31820 -19.16570 -18.55192 -18.04660 -17.24573 -16.80642 -16.75397 -16.12560 -15.91831 -15.70269 -15.57225 -15.44186 -15.35716 -15.17098 -14.92869 -14.59251 -14.39081 -14.09760 -13.94841 -13.87843 -13.69166 -13.41149 -13.35527 -13.05639 -13.03286 -12.89427 -12.76571 -12.65169 -12.45601 -12.23336 -12.17711 -12.00818 -11.90265 -11.75610 -11.65380 -11.48145 -11.35290 -11.13678 -10.94357 -10.63415 -9.90670 -9.73844 -9.01954 -8.23342 -7.99538 -5.28609 0.19920 0.48946 1.42976 1.44551 1.53831 1.78332 2.06217 2.17127 2.52844 2.90006 3.33093 3.62276 3.75458 3.83011 3.93363 4.01341 4.06659 4.09593 4.14454 4.22740 4.31990 4.33624 4.38112 4.41568 4.48250 4.50905 4.61694 4.61999 4.68341 4.72066 4.74543 4.79400 4.88414 4.91509 4.93945 5.00030 5.04096 5.08090 5.12390 5.24280 5.25430 5.28788 5.34101 5.38883 5.43000 5.46069 5.49446 5.53551 5.63571 5.77621 6.23410 6.32166 6.48070 6.51319 7.19853 7.29881 8.01723 8.28197 9.22996 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.020930 B = 0.002153 C = 0.002012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.467226 B =13002.335407 C =13913.392373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.139 4.139 3 C 0.116 3.884 4 N -0.624 5.624 5 C 0.083 3.917 6 C 0.240 3.760 7 C -0.208 4.208 8 C -0.030 4.030 9 C -0.209 4.209 10 C 0.552 3.448 11 O -0.602 6.602 12 N -0.600 5.600 13 C 0.098 3.902 14 C -0.121 4.121 15 C -0.116 4.116 16 C 0.167 3.833 17 H 0.027 0.973 18 N -0.729 5.729 19 C -0.245 4.245 20 H 0.062 0.938 21 C -0.068 4.068 22 N -0.962 5.962 23 Si 0.969 3.031 24 H -0.283 1.283 25 H -0.289 1.289 26 H -0.279 1.279 27 C 0.108 3.892 28 C -0.033 4.033 29 C -0.201 4.201 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.055 0.945 33 H 0.056 0.944 34 H 0.061 0.939 35 H 0.090 0.910 36 H 0.082 0.918 37 H 0.055 0.945 38 H 0.085 0.915 39 H 0.071 0.929 40 H 0.144 0.856 41 H 0.112 0.888 42 H 0.090 0.910 43 H 0.112 0.888 44 H 0.112 0.888 45 H 0.056 0.944 46 H 0.070 0.930 47 H 0.061 0.939 48 H 0.378 0.622 49 H 0.253 0.747 50 H 0.045 0.955 51 H 0.062 0.938 52 H 0.142 0.858 53 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.839 -0.009 30.141 37.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.178 4.178 3 C -0.007 4.007 4 N -0.331 5.331 5 C -0.060 4.060 6 C 0.134 3.866 7 C -0.230 4.230 8 C -0.050 4.050 9 C -0.214 4.214 10 C 0.344 3.656 11 O -0.484 6.484 12 N -0.332 5.332 13 C -0.023 4.023 14 C -0.160 4.160 15 C -0.155 4.155 16 C 0.058 3.942 17 H 0.045 0.955 18 N -0.369 5.369 19 C -0.377 4.377 20 H 0.080 0.920 21 C -0.261 4.261 22 N -0.612 5.612 23 Si 0.798 3.202 24 H -0.209 1.209 25 H -0.215 1.215 26 H -0.204 1.204 27 C -0.018 4.018 28 C -0.052 4.052 29 C -0.224 4.224 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.079 0.921 35 H 0.108 0.892 36 H 0.100 0.900 37 H 0.074 0.926 38 H 0.103 0.897 39 H 0.089 0.911 40 H 0.161 0.839 41 H 0.130 0.870 42 H 0.108 0.892 43 H 0.130 0.870 44 H 0.130 0.870 45 H 0.075 0.925 46 H 0.089 0.911 47 H 0.080 0.920 48 H 0.211 0.789 49 H 0.062 0.938 50 H 0.064 0.936 51 H 0.080 0.920 52 H 0.160 0.840 53 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -21.265 0.383 30.294 37.014 hybrid contribution 1.546 0.338 -1.111 1.933 sum -19.719 0.721 29.183 35.228 Atomic orbital electron populations 1.21695 0.94334 1.02211 1.02463 1.21912 0.96658 0.96973 1.02212 1.21733 0.77888 0.97117 1.03940 1.46655 1.05789 1.77644 1.03043 1.21854 0.97631 1.02014 0.84478 1.18100 0.91023 0.90568 0.86891 1.20700 0.92579 1.11605 0.98146 1.20893 0.99478 0.93480 0.91159 1.19427 0.94757 1.15688 0.91550 1.19026 0.83314 0.78713 0.84583 1.90736 1.29030 1.45004 1.83642 1.48201 1.35110 1.39801 1.10090 1.22349 0.88009 0.88031 1.03951 1.21883 1.02202 0.97138 0.94752 1.21728 0.96502 0.99000 0.98246 1.20638 0.94771 0.92903 0.85918 0.95507 1.42490 1.08740 1.82830 1.02810 1.19497 0.88088 1.38085 0.92058 0.91967 1.25487 1.02030 1.03203 0.95375 1.69787 1.36211 1.57116 0.98127 0.85218 0.80373 0.77787 0.76871 1.20942 1.21540 1.20440 1.22207 0.96732 1.00091 0.82760 1.21195 0.91304 0.93455 0.99224 1.20794 1.00785 1.10854 0.89918 0.91968 0.92127 0.92548 0.92480 0.92056 0.89164 0.90010 0.92607 0.89681 0.91054 0.83882 0.86967 0.89160 0.87006 0.86955 0.92469 0.91110 0.92007 0.78902 0.93787 0.93619 0.91957 0.83995 0.83029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.72 9.91 71.98 0.71 -0.01 16 2 C -0.14 -0.92 6.26 30.59 0.19 -0.73 16 3 C 0.12 0.78 5.15 86.38 0.44 1.23 16 4 N -0.62 -6.69 2.99 -722.21 -2.16 -8.85 16 5 C 0.08 0.59 10.17 127.77 1.30 1.89 16 6 C 0.24 3.83 6.55 38.47 0.25 4.08 16 7 C -0.21 -3.94 9.18 22.36 0.21 -3.73 16 8 C -0.03 -0.77 9.64 22.50 0.22 -0.56 16 9 C -0.21 -5.74 5.08 -20.07 -0.10 -5.84 16 10 C 0.55 20.25 7.29 86.69 0.63 20.88 16 11 O -0.60 -28.32 16.36 -4.00 -0.07 -28.39 16 12 N -0.60 -20.07 2.97 -822.65 -2.45 -22.52 16 13 C 0.10 2.20 4.92 86.36 0.42 2.62 16 14 C -0.12 -2.80 6.08 30.67 0.19 -2.61 16 15 C -0.12 -3.69 5.35 30.62 0.16 -3.53 16 16 C 0.17 7.15 2.92 45.07 0.13 7.28 16 17 H 0.03 1.26 8.08 -2.39 -0.02 1.24 16 18 N -0.73 -38.50 5.13 -322.58 -1.65 -40.15 16 19 C -0.25 -14.55 9.93 84.03 0.83 -13.71 16 20 H 0.06 3.72 7.83 -2.91 -0.02 3.70 16 21 C -0.07 -4.08 5.50 84.86 0.47 -3.61 16 22 N -0.96 -59.95 13.06 21.65 0.28 -59.66 16 23 Si 0.97 48.69 29.55 68.60 2.03 50.72 16 24 H -0.28 -13.79 7.11 99.48 0.71 -13.08 16 25 H -0.29 -14.35 7.11 99.48 0.71 -13.64 16 26 H -0.28 -13.81 7.11 99.48 0.71 -13.10 16 27 C 0.11 4.49 6.03 86.36 0.52 5.01 16 28 C -0.03 -0.64 7.38 22.50 0.17 -0.48 16 29 C -0.20 -3.11 9.18 22.36 0.21 -2.91 16 30 H 0.06 0.22 8.14 -2.39 -0.02 0.20 16 31 H 0.06 0.27 8.14 -2.39 -0.02 0.25 16 32 H 0.06 0.31 8.14 -2.38 -0.02 0.29 16 33 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 34 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 35 H 0.09 0.37 8.07 -2.39 -0.02 0.35 16 36 H 0.08 0.53 6.17 -2.39 -0.01 0.52 16 37 H 0.06 0.37 8.14 -2.38 -0.02 0.35 16 38 H 0.08 0.32 8.07 -2.39 -0.02 0.30 16 39 H 0.07 0.53 6.17 -2.39 -0.01 0.52 16 40 H 0.14 2.11 6.11 -2.91 -0.02 2.09 16 41 H 0.11 3.12 8.06 -2.91 -0.02 3.10 16 42 H 0.09 1.65 8.13 -2.39 -0.02 1.63 16 43 H 0.11 2.07 4.81 -2.39 -0.01 2.06 16 44 H 0.11 1.77 8.14 -2.39 -0.02 1.76 16 45 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 46 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 47 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 48 H 0.38 20.75 7.80 -92.70 -0.72 20.03 16 49 H 0.25 15.23 8.31 -92.71 -0.77 14.46 16 50 H 0.05 2.30 7.00 -2.39 -0.02 2.28 16 51 H 0.06 2.54 8.14 -2.39 -0.02 2.52 16 52 H 0.14 2.37 6.71 -2.91 -0.02 2.35 16 53 H 0.15 1.55 6.11 -2.91 -0.02 1.53 16 Total: -1.00 -78.54 414.89 3.12 -75.43 By element: Atomic # 1 Polarization: 27.98 SS G_CDS: 0.18 Total: 28.16 kcal Atomic # 6 Polarization: -1.69 SS G_CDS: 6.95 Total: 5.27 kcal Atomic # 7 Polarization: -125.21 SS G_CDS: -5.98 Total: -131.18 kcal Atomic # 8 Polarization: -28.32 SS G_CDS: -0.07 Total: -28.39 kcal Atomic # 14 Polarization: 48.69 SS G_CDS: 2.03 Total: 50.72 kcal Total: -78.54 3.12 -75.43 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001001074621.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.159 kcal (2) G-P(sol) polarization free energy of solvation -78.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds