Wall clock time and date at job start Wed Apr 1 2020 04:36:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.46880 * 2 1 4 4 N 1.46501 * 109.46841 * 119.99700 * 2 1 3 5 5 C 1.46501 * 119.99890 * 294.32677 * 4 2 1 6 6 C 1.39048 * 120.00271 * 114.32151 * 4 2 1 7 7 C 1.39220 * 119.92844 * 354.39081 * 6 4 2 8 8 C 1.37609 * 120.06614 * 179.97438 * 7 6 4 9 9 C 1.39790 * 119.93387 * 359.97438 * 8 7 6 10 10 C 1.47519 * 120.06797 * 179.97438 * 9 8 7 11 11 O 1.21593 * 120.00420 * 359.97438 * 10 9 8 12 12 N 1.34778 * 119.99855 * 180.27779 * 10 9 8 13 13 C 1.46498 * 120.00346 * 179.72321 * 12 10 9 14 14 H 1.09005 * 109.49334 * 325.00495 * 13 12 10 15 15 C 1.53037 * 109.50007 * 204.93832 * 13 12 10 16 16 C 1.53042 * 109.54049 * 178.71459 * 15 13 12 17 17 C 1.53199 * 109.33589 * 61.31268 * 16 15 13 18 18 N 1.46926 * 108.77737 * 305.38216 * 17 16 15 19 19 C 1.36931 * 120.62900 * 233.63376 * 18 17 16 20 20 H 1.08004 * 120.00629 * 35.16293 * 19 18 17 21 21 C 1.38819 * 119.99976 * 215.16446 * 19 18 17 22 22 N 1.31621 * 119.99712 * 19.67556 * 21 19 18 23 23 Si 1.86795 * 120.00177 * 199.67695 * 21 19 18 24 24 H 1.48504 * 109.47324 * 359.97438 * 23 21 19 25 25 H 1.48501 * 109.47042 * 119.99922 * 23 21 19 26 26 H 1.48499 * 109.47019 * 239.99726 * 23 21 19 27 27 C 1.46919 * 118.73962 * 53.60894 * 18 17 16 28 28 C 1.39802 * 119.86102 * 0.25657 * 9 8 7 29 29 C 1.37609 * 119.92819 * 359.48644 * 28 9 8 30 30 H 1.08995 * 109.47479 * 300.00279 * 1 2 3 31 31 H 1.09000 * 109.46990 * 60.00302 * 1 2 3 32 32 H 1.08999 * 109.47205 * 180.02562 * 1 2 3 33 33 H 1.08995 * 109.47479 * 239.99720 * 2 1 3 34 34 H 1.09000 * 109.47063 * 299.99654 * 3 2 1 35 35 H 1.09004 * 109.47280 * 59.99862 * 3 2 1 36 36 H 1.09003 * 109.46958 * 179.97438 * 3 2 1 37 37 H 1.09005 * 109.47005 * 269.99791 * 5 4 2 38 38 H 1.09000 * 109.47436 * 29.99983 * 5 4 2 39 39 H 1.09002 * 109.47362 * 150.00396 * 5 4 2 40 40 H 1.08002 * 119.96527 * 359.95834 * 7 6 4 41 41 H 1.08004 * 120.03287 * 180.02562 * 8 7 6 42 42 H 0.97004 * 120.00198 * 359.73102 * 12 10 9 43 43 H 1.09004 * 109.45912 * 298.70177 * 15 13 12 44 44 H 1.08994 * 109.46312 * 58.66400 * 15 13 12 45 45 H 1.09000 * 109.46786 * 301.36478 * 16 15 13 46 46 H 1.08994 * 109.52717 * 181.29846 * 16 15 13 47 47 H 1.09005 * 109.58008 * 185.59336 * 17 16 15 48 48 H 1.09003 * 109.70366 * 65.24195 * 17 16 15 49 49 H 0.97002 * 119.99851 * 179.97438 * 22 21 19 50 50 H 1.09002 * 109.59136 * 186.60488 * 27 18 17 51 51 H 1.08999 * 109.70540 * 66.24647 * 27 18 17 52 52 H 1.08002 * 120.03427 * 179.72391 * 28 9 8 53 53 H 1.07995 * 119.96496 * 180.23623 * 29 28 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.7697 -0.1217 2.5232 6 6 2.7176 -1.8860 1.0722 7 6 2.8522 -2.4856 -0.1770 8 6 3.5442 -3.6683 -0.3031 9 6 4.1127 -4.2675 0.8247 10 6 4.8546 -5.5358 0.6931 11 8 4.9717 -6.0613 -0.3971 12 7 5.3973 -6.1151 1.7822 13 6 6.1289 -7.3777 1.6525 14 1 5.6620 -7.9912 0.8819 15 6 6.0993 -8.1248 2.9878 16 6 6.8358 -9.4587 2.8446 17 6 8.2976 -9.1933 2.4705 18 7 8.3324 -8.3523 1.2662 19 6 9.0496 -8.7391 0.1657 20 1 9.1157 -9.7850 -0.0957 21 6 9.6918 -7.7870 -0.6140 22 7 9.9484 -6.5949 -0.1185 23 14 10.1919 -8.1975 -2.3663 24 1 9.7934 -9.5931 -2.6808 25 1 9.5164 -7.2659 -3.3050 26 1 11.6639 -8.0601 -2.5061 27 6 7.5826 -7.0889 1.2649 28 6 3.9716 -3.6654 2.0785 29 6 3.2830 -2.4799 2.1972 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.8934 -0.5138 -0.8899 34 1 1.6767 1.9563 -0.8900 35 1 1.6766 1.9564 0.8900 36 1 3.1300 1.4425 0.0005 37 1 2.5909 0.5421 2.7937 38 1 0.8369 0.4420 2.5079 39 1 1.6963 -0.9258 3.2554 40 1 2.4129 -2.0221 -1.0480 41 1 3.6486 -4.1328 -1.2725 42 1 5.3035 -5.6962 2.6521 43 1 6.5878 -7.5211 3.7527 44 1 5.0649 -8.3100 3.2774 45 1 6.3624 -10.0530 2.0630 46 1 6.7947 -10.0008 3.7892 47 1 8.8010 -10.1392 2.2704 48 1 8.7991 -8.6787 3.2902 49 1 10.3975 -5.9297 -0.6632 50 1 7.6143 -6.6461 0.2694 51 1 8.0227 -6.3996 1.9855 52 1 4.4059 -4.1282 2.9524 53 1 3.1770 -2.0123 3.1649 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001009730223.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:36:49 Heat of formation + Delta-G solvation = -6.165093 kcal Electronic energy + Delta-G solvation = -30432.173140 eV Core-core repulsion = 26496.203594 eV Total energy + Delta-G solvation = -3935.969545 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -41.33525 -40.34505 -38.94807 -37.72075 -35.81800 -34.45762 -33.70055 -32.29168 -31.89001 -30.91577 -29.95630 -28.07491 -27.37932 -27.20335 -24.64238 -23.96949 -23.74387 -22.62862 -21.69461 -21.05355 -20.46381 -19.17728 -18.72294 -18.02057 -17.31768 -16.80569 -16.42497 -15.99609 -15.97022 -15.75756 -15.66452 -15.30937 -15.23473 -14.90033 -14.74842 -14.73211 -14.33520 -14.18823 -13.97494 -13.82243 -13.56769 -13.44106 -13.36094 -13.07458 -13.00883 -12.90742 -12.71005 -12.69454 -12.52871 -12.29567 -12.22560 -12.07706 -11.93332 -11.70478 -11.59120 -11.49935 -11.24251 -10.85322 -10.82428 -10.59198 -10.07206 -9.98197 -8.63927 -8.26739 -7.92190 -5.44362 0.09196 0.48512 1.37336 1.42694 1.51531 1.98102 2.10176 2.26190 2.47429 3.00050 3.22611 3.69678 3.72660 3.86701 3.89866 3.99312 4.04085 4.14779 4.15571 4.26270 4.27846 4.29730 4.42217 4.49005 4.51876 4.61308 4.65660 4.70699 4.73792 4.78984 4.82512 4.89787 4.91756 4.95640 4.97740 5.07757 5.09888 5.20862 5.22099 5.22573 5.27908 5.30989 5.35047 5.36935 5.40571 5.52166 5.54445 5.63102 5.71467 5.77397 6.31394 6.37617 6.47707 6.69111 7.10251 7.38024 7.81307 8.35652 9.11127 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.014649 B = 0.002388 C = 0.002169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1910.920287 B =11724.327708 C =12903.725869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.128 3.872 3 C -0.157 4.157 4 N -0.617 5.617 5 C 0.082 3.918 6 C 0.244 3.756 7 C -0.214 4.214 8 C -0.026 4.026 9 C -0.219 4.219 10 C 0.551 3.449 11 O -0.599 6.599 12 N -0.706 5.706 13 C 0.133 3.867 14 H 0.050 0.950 15 C -0.106 4.106 16 C -0.121 4.121 17 C 0.135 3.865 18 N -0.607 5.607 19 C -0.271 4.271 20 H 0.062 0.938 21 C -0.042 4.042 22 N -0.925 5.925 23 Si 0.958 3.042 24 H -0.263 1.263 25 H -0.298 1.298 26 H -0.281 1.281 27 C 0.186 3.814 28 C -0.027 4.027 29 C -0.206 4.206 30 H 0.066 0.934 31 H 0.078 0.922 32 H 0.048 0.952 33 H 0.086 0.914 34 H 0.079 0.921 35 H 0.068 0.932 36 H 0.046 0.954 37 H 0.056 0.944 38 H 0.084 0.916 39 H 0.077 0.923 40 H 0.142 0.858 41 H 0.112 0.888 42 H 0.411 0.589 43 H 0.076 0.924 44 H 0.087 0.913 45 H 0.051 0.949 46 H 0.099 0.901 47 H 0.054 0.946 48 H 0.021 0.979 49 H 0.248 0.752 50 H 0.020 0.980 51 H 0.003 0.997 52 H 0.147 0.853 53 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.462 16.287 10.182 29.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.025 3.975 3 C -0.215 4.215 4 N -0.325 5.325 5 C -0.060 4.060 6 C 0.138 3.862 7 C -0.236 4.236 8 C -0.046 4.046 9 C -0.224 4.224 10 C 0.342 3.658 11 O -0.481 6.481 12 N -0.358 5.358 13 C 0.026 3.974 14 H 0.068 0.932 15 C -0.144 4.144 16 C -0.160 4.160 17 C 0.011 3.989 18 N -0.331 5.331 19 C -0.402 4.402 20 H 0.080 0.920 21 C -0.239 4.239 22 N -0.569 5.569 23 Si 0.785 3.215 24 H -0.187 1.187 25 H -0.225 1.225 26 H -0.208 1.208 27 C 0.059 3.941 28 C -0.047 4.047 29 C -0.228 4.228 30 H 0.085 0.915 31 H 0.097 0.903 32 H 0.067 0.933 33 H 0.104 0.896 34 H 0.098 0.902 35 H 0.087 0.913 36 H 0.065 0.935 37 H 0.074 0.926 38 H 0.103 0.897 39 H 0.096 0.904 40 H 0.159 0.841 41 H 0.130 0.870 42 H 0.248 0.752 43 H 0.095 0.905 44 H 0.106 0.894 45 H 0.069 0.931 46 H 0.117 0.883 47 H 0.073 0.927 48 H 0.039 0.961 49 H 0.057 0.943 50 H 0.039 0.961 51 H 0.021 0.979 52 H 0.165 0.835 53 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -22.396 16.218 9.416 29.211 hybrid contribution 0.863 0.055 -1.159 1.446 sum -21.533 16.273 8.256 28.225 Atomic orbital electron populations 1.22147 0.94070 1.02120 1.03332 1.21288 0.94890 0.93593 0.87745 1.22120 1.00981 0.94945 1.03477 1.46758 1.57442 1.20861 1.07413 1.21841 1.01935 0.99407 0.82778 1.18141 0.88746 0.85759 0.93575 1.20726 1.07771 0.97747 0.97401 1.20971 0.92286 0.93793 0.97552 1.19587 1.08972 0.97546 0.96343 1.18831 0.78210 0.85086 0.83713 1.90749 1.62640 1.66289 1.28424 1.45783 1.54746 1.24714 1.10547 1.21481 0.92291 0.84555 0.99063 0.93160 1.21641 1.01739 0.96572 0.94417 1.21900 0.95563 0.96548 1.02021 1.21194 0.95605 0.94156 0.87968 1.44163 1.54481 1.21986 1.12473 1.19394 1.24553 0.92881 1.03348 0.92002 1.25957 0.97800 0.97090 1.03098 1.70195 1.44125 1.06490 1.36110 0.85365 0.77337 0.78095 0.80659 1.18679 1.22504 1.20771 1.20663 0.88435 0.87482 0.97554 1.21230 0.94048 0.93952 0.95451 1.20837 1.05029 0.98148 0.98758 0.91459 0.90298 0.93269 0.89625 0.90221 0.91332 0.93459 0.92594 0.89717 0.90424 0.84093 0.86991 0.75152 0.90527 0.89429 0.93066 0.88255 0.92735 0.96112 0.94278 0.96086 0.97895 0.83544 0.82631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.37 9.26 71.98 0.67 -0.71 16 2 C 0.13 1.46 3.14 44.99 0.14 1.60 16 3 C -0.16 -1.43 9.10 71.98 0.66 -0.78 16 4 N -0.62 -8.51 2.88 -698.08 -2.01 -10.52 16 5 C 0.08 0.69 8.90 127.77 1.14 1.83 16 6 C 0.24 4.79 6.54 38.47 0.25 5.04 16 7 C -0.21 -5.00 9.24 22.36 0.21 -4.79 16 8 C -0.03 -0.79 9.58 22.50 0.22 -0.58 16 9 C -0.22 -6.94 5.88 -20.08 -0.12 -7.06 16 10 C 0.55 22.23 7.73 86.69 0.67 22.90 16 11 O -0.60 -30.70 16.00 -4.01 -0.06 -30.76 16 12 N -0.71 -24.89 5.03 -445.34 -2.24 -27.13 16 13 C 0.13 5.47 2.60 45.07 0.12 5.58 16 14 H 0.05 2.42 7.58 -2.38 -0.02 2.40 16 15 C -0.11 -3.25 5.36 30.62 0.16 -3.08 16 16 C -0.12 -3.92 6.08 30.67 0.19 -3.73 16 17 C 0.14 5.74 6.52 86.36 0.56 6.30 16 18 N -0.61 -32.75 2.94 -699.08 -2.06 -34.81 16 19 C -0.27 -16.22 9.47 84.04 0.80 -15.42 16 20 H 0.06 3.61 7.90 -2.91 -0.02 3.59 16 21 C -0.04 -2.60 4.79 84.86 0.41 -2.19 16 22 N -0.93 -59.48 11.93 21.65 0.26 -59.22 16 23 Si 0.96 49.17 29.60 68.60 2.03 51.21 16 24 H -0.26 -12.77 7.11 99.48 0.71 -12.07 16 25 H -0.30 -15.69 7.11 99.48 0.71 -14.98 16 26 H -0.28 -13.91 7.11 99.48 0.71 -13.20 16 27 C 0.19 9.81 4.89 86.36 0.42 10.23 16 28 C -0.03 -0.63 9.53 22.50 0.21 -0.41 16 29 C -0.21 -3.84 9.13 22.36 0.20 -3.63 16 30 H 0.07 0.46 6.90 -2.39 -0.02 0.45 16 31 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 32 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 33 H 0.09 1.13 5.37 -2.39 -0.01 1.11 16 34 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 35 H 0.07 0.49 7.52 -2.39 -0.02 0.47 16 36 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 37 H 0.06 0.44 8.14 -2.38 -0.02 0.42 16 38 H 0.08 0.44 6.71 -2.39 -0.02 0.43 16 39 H 0.08 0.56 6.43 -2.39 -0.02 0.55 16 40 H 0.14 2.72 5.81 -2.91 -0.02 2.71 16 41 H 0.11 3.79 7.64 -2.91 -0.02 3.76 16 42 H 0.41 10.75 6.62 -92.71 -0.61 10.14 16 43 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 44 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 45 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 46 H 0.10 2.42 8.14 -2.39 -0.02 2.40 16 47 H 0.05 2.27 7.93 -2.38 -0.02 2.25 16 48 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 49 H 0.25 15.45 8.31 -92.71 -0.77 14.68 16 50 H 0.02 1.31 6.70 -2.39 -0.02 1.30 16 51 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 52 H 0.15 2.54 6.39 -2.91 -0.02 2.53 16 53 H 0.16 1.93 6.28 -2.91 -0.02 1.91 16 Total: -1.00 -83.31 411.10 3.11 -80.20 By element: Atomic # 1 Polarization: 19.66 SS G_CDS: 0.29 Total: 19.96 kcal Atomic # 6 Polarization: 4.19 SS G_CDS: 6.90 Total: 11.09 kcal Atomic # 7 Polarization: -125.64 SS G_CDS: -6.05 Total: -131.69 kcal Atomic # 8 Polarization: -30.70 SS G_CDS: -0.06 Total: -30.76 kcal Atomic # 14 Polarization: 49.17 SS G_CDS: 2.03 Total: 51.21 kcal Total: -83.31 3.11 -80.20 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001009730223.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.035 kcal (2) G-P(sol) polarization free energy of solvation -83.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds